Wall clock time and date at job start Tue Mar 31 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38171 * 120.02652 * 2 1 4 4 C 1.38247 * 120.05537 * 179.79239 * 3 2 1 5 5 C 1.38295 * 120.10966 * 0.45878 * 4 3 2 6 6 C 1.38122 * 120.05559 * 359.79764 * 5 4 3 7 7 C 1.38712 * 120.03278 * 180.27797 * 2 1 3 8 8 O 1.35900 * 120.05236 * 359.95425 * 7 2 1 9 9 C 1.42896 * 117.00200 * 174.61190 * 8 7 2 10 10 H 1.09001 * 109.47140 * 324.82981 * 9 8 7 11 11 C 1.52998 * 109.47615 * 84.82903 * 9 8 7 12 12 C 1.52993 * 109.47538 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47245 * 299.99881 * 12 11 9 14 14 C 1.53006 * 109.46787 * 59.99875 * 13 12 11 15 15 C 1.52995 * 109.46978 * 299.99985 * 14 13 12 16 16 H 1.09001 * 109.47601 * 300.00030 * 15 14 13 17 17 N 1.46907 * 109.47005 * 180.02562 * 15 14 13 18 18 C 1.46904 * 110.99844 * 84.99696 * 17 15 14 19 19 C 1.50699 * 109.46818 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00035 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99737 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99906 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99914 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46909 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46669 * 120.00172 * 23 21 19 26 26 H 1.48493 * 109.47547 * 240.00060 * 23 21 19 27 27 H 1.09002 * 109.47390 * 269.72021 * 1 2 3 28 28 H 1.09003 * 109.46868 * 149.71999 * 1 2 3 29 29 H 1.08998 * 109.47125 * 29.72381 * 1 2 3 30 30 H 1.07995 * 119.97051 * 0.02562 * 3 2 1 31 31 H 1.07992 * 119.94851 * 180.26022 * 4 3 2 32 32 H 1.08001 * 119.96916 * 179.76895 * 5 4 3 33 33 H 1.07996 * 120.02955 * 179.97438 * 6 5 4 34 34 H 1.09007 * 109.46873 * 300.00557 * 11 9 8 35 35 H 1.09001 * 109.46803 * 59.99872 * 11 9 8 36 36 H 1.09001 * 109.47353 * 59.99994 * 12 11 9 37 37 H 1.09003 * 109.47006 * 179.97438 * 12 11 9 38 38 H 1.08996 * 109.47294 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.47038 * 300.00306 * 13 12 11 40 40 H 1.09001 * 109.46979 * 60.00396 * 14 13 12 41 41 H 1.09003 * 109.46522 * 180.02562 * 14 13 12 42 42 H 1.00901 * 111.00192 * 208.95704 * 17 15 14 43 43 H 1.08994 * 109.47195 * 300.00652 * 18 17 15 44 44 H 1.09004 * 109.46905 * 60.00632 * 18 17 15 45 45 H 0.97000 * 119.99524 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 0.0043 5 6 4.2752 0.0010 -0.0009 6 6 3.5887 -1.1975 -0.0062 7 6 2.2012 -1.2009 -0.0058 8 8 1.5234 -2.3788 -0.0106 9 6 2.2985 -3.5727 -0.1360 10 1 3.1494 -3.3864 -0.7913 11 6 2.8018 -4.0015 1.2437 12 6 3.6321 -5.2794 1.1094 13 6 2.7649 -6.3910 0.5149 14 6 2.2617 -5.9622 -0.8650 15 6 1.4313 -4.6843 -0.7305 16 1 0.5804 -4.8710 -0.0753 17 7 0.9476 -4.2730 -2.0553 18 6 -0.2980 -4.9709 -2.4009 19 6 -0.7629 -4.5238 -3.7629 20 1 -0.1902 -3.7946 -4.3165 21 6 -1.9196 -5.0459 -4.3022 22 7 -2.6173 -5.9335 -3.6277 23 14 -2.4963 -4.4913 -5.9901 24 1 -1.5421 -3.4926 -6.5357 25 1 -2.5608 -5.6626 -6.9007 26 1 -3.8439 -3.8781 -5.8761 27 1 -0.3634 -0.0050 1.0277 28 1 -0.3633 -0.8875 -0.5182 29 1 -0.3633 0.8924 -0.5095 30 1 1.6583 2.1315 0.0004 31 1 4.1195 2.1330 0.0086 32 1 5.3552 0.0042 -0.0013 33 1 4.1314 -2.1312 -0.0108 34 1 3.4199 -3.2097 1.6672 35 1 1.9509 -4.1878 1.8991 36 1 4.4830 -5.0927 0.4542 37 1 3.9910 -5.5846 2.0924 38 1 3.3566 -7.3013 0.4187 39 1 1.9141 -6.5777 1.1700 40 1 3.1125 -5.7755 -1.5202 41 1 1.6435 -6.7540 -1.2883 42 1 0.8263 -3.2723 -2.1013 43 1 -0.1210 -6.0463 -2.4118 44 1 -1.0633 -4.7361 -1.6611 45 1 -3.4308 -6.3010 -4.0073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411566174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:16 Heat of formation + Delta-G solvation = -36.703613 kcal Electronic energy + Delta-G solvation = -23560.255587 eV Core-core repulsion = 20348.652612 eV Total energy + Delta-G solvation = -3211.602976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.49906 -38.54657 -36.51123 -34.52041 -32.74231 -32.32559 -30.25462 -29.78120 -28.75853 -26.64764 -25.77296 -23.35505 -22.53802 -21.46525 -21.31071 -20.73679 -19.55074 -17.90518 -16.69921 -15.90696 -15.64517 -15.30152 -14.88971 -14.63960 -14.46671 -14.17592 -13.94561 -13.68740 -13.30403 -13.09108 -12.95925 -12.56706 -12.45018 -12.18757 -12.10248 -11.82347 -11.56796 -11.38144 -11.29587 -11.07876 -11.02358 -10.74146 -10.72120 -10.64544 -10.35250 -10.31013 -10.09540 -9.65086 -9.09734 -8.77840 -8.45801 -7.99189 -7.28315 -6.00455 -4.01641 1.35320 1.50685 3.32000 3.32836 3.39951 3.45565 3.80081 4.44557 4.70372 4.73464 4.84277 4.87244 4.98399 5.06151 5.18457 5.27860 5.31535 5.33037 5.35844 5.46487 5.54489 5.61342 5.65990 5.67839 5.74946 5.83497 5.87303 5.93003 6.01839 6.12660 6.20394 6.23485 6.29517 6.34471 6.41680 6.51164 6.56733 6.58369 6.67783 6.88955 7.29095 7.46902 7.60952 7.81997 8.15724 8.43217 8.64568 9.07896 9.63019 11.10772 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012443 B = 0.005069 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.711025 B = 5522.603066 C = 7212.463768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.117 4.117 3 C -0.086 4.086 4 C -0.162 4.162 5 C -0.089 4.089 6 C -0.207 4.207 7 C 0.140 3.860 8 O -0.302 6.302 9 C 0.086 3.914 10 H 0.078 0.922 11 C -0.142 4.142 12 C -0.114 4.114 13 C -0.123 4.123 14 C -0.103 4.103 15 C 0.096 3.904 16 H 0.044 0.956 17 N -0.685 5.685 18 C 0.196 3.804 19 C -0.511 4.511 20 H 0.062 0.938 21 C 0.056 3.944 22 N -0.898 5.898 23 Si 0.897 3.103 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.285 1.285 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.335 0.665 43 H 0.028 0.972 44 H -0.013 1.013 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.247 8.629 11.522 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.118 4.118 3 C -0.104 4.104 4 C -0.180 4.180 5 C -0.107 4.107 6 C -0.226 4.226 7 C 0.095 3.905 8 O -0.215 6.215 9 C 0.030 3.970 10 H 0.096 0.904 11 C -0.180 4.180 12 C -0.151 4.151 13 C -0.161 4.161 14 C -0.142 4.142 15 C -0.015 4.015 16 H 0.062 0.938 17 N -0.316 5.316 18 C 0.069 3.931 19 C -0.549 4.549 20 H 0.080 0.920 21 C -0.145 4.145 22 N -0.538 5.538 23 Si 0.725 3.275 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.211 1.211 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.143 0.857 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.152 0.848 43 H 0.046 0.954 44 H 0.004 0.996 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.257 8.024 11.171 19.103 hybrid contribution -0.799 0.595 -0.334 1.051 sum 12.458 8.619 10.837 18.626 Atomic orbital electron populations 1.20631 0.90420 1.03282 1.02083 1.19331 0.96679 0.90411 1.05381 1.20857 0.94091 0.96712 0.98754 1.20965 0.94214 0.97865 1.05005 1.20879 0.99498 0.91966 0.98372 1.21306 0.93234 0.99400 1.08615 1.18873 0.90345 0.86006 0.95323 1.86133 1.36251 1.12224 1.86938 1.22745 0.94839 0.83030 0.96405 0.90403 1.22099 1.00589 0.98140 0.97217 1.21479 0.98154 0.94592 1.00897 1.21613 0.99416 0.97726 0.97337 1.21513 0.99875 0.96932 0.95854 1.21487 0.95992 0.92244 0.91794 0.93782 1.60758 1.35805 1.11375 1.23691 1.19579 0.83651 0.94456 0.95372 1.21217 1.07379 1.24288 1.02060 0.92021 1.24974 0.96520 0.95168 0.97866 1.69975 1.16402 1.29539 1.37872 0.86455 0.78467 0.78513 0.84067 1.19675 1.21029 1.21100 0.91674 0.90496 0.91834 0.85736 0.86320 0.86221 0.85346 0.91561 0.90913 0.91882 0.91790 0.91792 0.91939 0.91473 0.90760 0.84773 0.95422 0.99562 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 9.79 36.00 0.35 -1.08 16 2 C -0.12 -1.64 5.89 -104.47 -0.62 -2.26 16 3 C -0.09 -1.02 9.70 -39.60 -0.38 -1.41 16 4 C -0.16 -1.79 10.04 -39.56 -0.40 -2.19 16 5 C -0.09 -1.02 10.04 -39.60 -0.40 -1.41 16 6 C -0.21 -2.70 8.24 -39.44 -0.32 -3.03 16 7 C 0.14 2.10 6.57 -39.22 -0.26 1.84 16 8 O -0.30 -4.96 7.99 -19.43 -0.16 -5.12 16 9 C 0.09 1.30 1.66 -26.73 -0.04 1.25 16 10 H 0.08 1.16 6.32 -51.93 -0.33 0.83 16 11 C -0.14 -1.75 5.18 -26.74 -0.14 -1.89 16 12 C -0.11 -1.23 5.92 -26.73 -0.16 -1.39 16 13 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 14 C -0.10 -1.64 5.43 -26.73 -0.15 -1.78 16 15 C 0.10 1.72 2.21 -67.71 -0.15 1.57 16 16 H 0.04 0.87 7.80 -51.93 -0.40 0.46 16 17 N -0.68 -15.05 6.30 -107.99 -0.68 -15.73 16 18 C 0.20 5.22 5.24 -4.97 -0.03 5.19 16 19 C -0.51 -14.72 9.32 -34.44 -0.32 -15.05 16 20 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 23 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.20 7.53 -51.93 -0.39 0.81 16 29 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.13 1.54 5.43 -52.49 -0.28 1.25 16 34 H 0.07 0.76 6.90 -51.93 -0.36 0.40 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.32 7.45 -51.93 -0.39 0.93 16 42 H 0.33 7.43 7.64 -39.29 -0.30 7.13 16 43 H 0.03 0.78 7.43 -51.93 -0.39 0.40 16 44 H -0.01 -0.38 8.06 -51.93 -0.42 -0.80 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -30.67 354.97 -10.48 -41.16 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.45 Total: 5.51 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -3.26 Total: -21.79 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.06 Total: -42.10 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.16 Total: -5.12 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.67 -10.48 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411566174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.454 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds