Wall clock time and date at job start Tue Mar 31 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38171 * 120.02652 * 2 1 4 4 C 1.38247 * 120.05537 * 179.79239 * 3 2 1 5 5 C 1.38295 * 120.10966 * 0.45878 * 4 3 2 6 6 C 1.38122 * 120.05559 * 359.79764 * 5 4 3 7 7 C 1.38712 * 120.03278 * 180.27797 * 2 1 3 8 8 O 1.35900 * 120.05236 * 359.95425 * 7 2 1 9 9 C 1.42896 * 117.00200 * 174.61190 * 8 7 2 10 10 H 1.09001 * 109.47140 * 324.82981 * 9 8 7 11 11 C 1.52998 * 109.47615 * 84.82903 * 9 8 7 12 12 C 1.52993 * 109.47538 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47245 * 299.99881 * 12 11 9 14 14 C 1.53006 * 109.46787 * 59.99875 * 13 12 11 15 15 C 1.52995 * 109.46978 * 299.99985 * 14 13 12 16 16 H 1.09001 * 109.47601 * 300.00030 * 15 14 13 17 17 N 1.46907 * 109.47005 * 180.02562 * 15 14 13 18 18 C 1.46904 * 110.99844 * 84.99696 * 17 15 14 19 19 C 1.50699 * 109.46818 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00035 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99737 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99906 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99914 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46909 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46669 * 120.00172 * 23 21 19 26 26 H 1.48493 * 109.47547 * 240.00060 * 23 21 19 27 27 H 1.09002 * 109.47390 * 269.72021 * 1 2 3 28 28 H 1.09003 * 109.46868 * 149.71999 * 1 2 3 29 29 H 1.08998 * 109.47125 * 29.72381 * 1 2 3 30 30 H 1.07995 * 119.97051 * 0.02562 * 3 2 1 31 31 H 1.07992 * 119.94851 * 180.26022 * 4 3 2 32 32 H 1.08001 * 119.96916 * 179.76895 * 5 4 3 33 33 H 1.07996 * 120.02955 * 179.97438 * 6 5 4 34 34 H 1.09007 * 109.46873 * 300.00557 * 11 9 8 35 35 H 1.09001 * 109.46803 * 59.99872 * 11 9 8 36 36 H 1.09001 * 109.47353 * 59.99994 * 12 11 9 37 37 H 1.09003 * 109.47006 * 179.97438 * 12 11 9 38 38 H 1.08996 * 109.47294 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.47038 * 300.00306 * 13 12 11 40 40 H 1.09001 * 109.46979 * 60.00396 * 14 13 12 41 41 H 1.09003 * 109.46522 * 180.02562 * 14 13 12 42 42 H 1.00901 * 111.00192 * 208.95704 * 17 15 14 43 43 H 1.08994 * 109.47195 * 300.00652 * 18 17 15 44 44 H 1.09004 * 109.46905 * 60.00632 * 18 17 15 45 45 H 0.97000 * 119.99524 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 0.0043 5 6 4.2752 0.0010 -0.0009 6 6 3.5887 -1.1975 -0.0062 7 6 2.2012 -1.2009 -0.0058 8 8 1.5234 -2.3788 -0.0106 9 6 2.2985 -3.5727 -0.1360 10 1 3.1494 -3.3864 -0.7913 11 6 2.8018 -4.0015 1.2437 12 6 3.6321 -5.2794 1.1094 13 6 2.7649 -6.3910 0.5149 14 6 2.2617 -5.9622 -0.8650 15 6 1.4313 -4.6843 -0.7305 16 1 0.5804 -4.8710 -0.0753 17 7 0.9476 -4.2730 -2.0553 18 6 -0.2980 -4.9709 -2.4009 19 6 -0.7629 -4.5238 -3.7629 20 1 -0.1902 -3.7946 -4.3165 21 6 -1.9196 -5.0459 -4.3022 22 7 -2.6173 -5.9335 -3.6277 23 14 -2.4963 -4.4913 -5.9901 24 1 -1.5421 -3.4926 -6.5357 25 1 -2.5608 -5.6626 -6.9007 26 1 -3.8439 -3.8781 -5.8761 27 1 -0.3634 -0.0050 1.0277 28 1 -0.3633 -0.8875 -0.5182 29 1 -0.3633 0.8924 -0.5095 30 1 1.6583 2.1315 0.0004 31 1 4.1195 2.1330 0.0086 32 1 5.3552 0.0042 -0.0013 33 1 4.1314 -2.1312 -0.0108 34 1 3.4199 -3.2097 1.6672 35 1 1.9509 -4.1878 1.8991 36 1 4.4830 -5.0927 0.4542 37 1 3.9910 -5.5846 2.0924 38 1 3.3566 -7.3013 0.4187 39 1 1.9141 -6.5777 1.1700 40 1 3.1125 -5.7755 -1.5202 41 1 1.6435 -6.7540 -1.2883 42 1 0.8263 -3.2723 -2.1013 43 1 -0.1210 -6.0463 -2.4118 44 1 -1.0633 -4.7361 -1.6611 45 1 -3.4308 -6.3010 -4.0073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411566174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:15 Heat of formation + Delta-G solvation = -54.309510 kcal Electronic energy + Delta-G solvation = -23561.019036 eV Core-core repulsion = 20348.652612 eV Total energy + Delta-G solvation = -3212.366425 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.60877 -39.67038 -37.66440 -36.26531 -34.37456 -33.72009 -31.30802 -30.98765 -30.23817 -27.75903 -27.58292 -24.46831 -24.24813 -22.69102 -22.38030 -22.09803 -20.78743 -18.97251 -18.67510 -17.31410 -16.76701 -16.57396 -16.33634 -16.22898 -15.55628 -15.47435 -15.27805 -14.95868 -14.41805 -14.34359 -14.09181 -14.03530 -13.94846 -13.64091 -13.41335 -13.16392 -12.94527 -12.79187 -12.65999 -12.44764 -12.26503 -12.18076 -12.14926 -12.08997 -11.71758 -11.51925 -11.43443 -11.26258 -10.98861 -10.69030 -9.71908 -9.20182 -9.01389 -8.25097 -6.36406 0.41573 0.54355 1.38323 1.39099 1.53335 2.21096 2.37728 2.85675 3.07956 3.32791 3.58250 3.87374 3.90481 3.93929 4.00891 4.13180 4.17856 4.23625 4.32078 4.38850 4.43676 4.45930 4.50766 4.69423 4.76694 4.77699 4.82538 4.85997 4.96289 5.00883 5.06051 5.11212 5.15430 5.21750 5.26728 5.30601 5.32428 5.44547 5.47946 5.57009 5.60329 5.63604 5.95945 5.99689 6.38835 6.53486 6.65630 6.83781 7.34312 8.86956 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012443 B = 0.005069 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.711025 B = 5522.603066 C = 7212.463768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.142 4.142 3 C -0.088 4.088 4 C -0.158 4.158 5 C -0.089 4.089 6 C -0.214 4.214 7 C 0.110 3.890 8 O -0.329 6.329 9 C 0.094 3.906 10 H 0.082 0.918 11 C -0.135 4.135 12 C -0.107 4.107 13 C -0.117 4.117 14 C -0.100 4.100 15 C 0.092 3.908 16 H 0.017 0.983 17 N -0.680 5.680 18 C 0.215 3.785 19 C -0.535 4.535 20 H 0.060 0.940 21 C 0.003 3.997 22 N -0.933 5.933 23 Si 0.973 3.027 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.276 1.276 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.137 0.863 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.332 0.668 43 H 0.004 0.996 44 H -0.048 1.048 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.631 10.281 11.556 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.142 4.142 3 C -0.106 4.106 4 C -0.176 4.176 5 C -0.107 4.107 6 C -0.232 4.232 7 C 0.065 3.935 8 O -0.243 6.243 9 C 0.038 3.962 10 H 0.100 0.900 11 C -0.173 4.173 12 C -0.144 4.144 13 C -0.155 4.155 14 C -0.138 4.138 15 C -0.019 4.019 16 H 0.035 0.965 17 N -0.311 5.311 18 C 0.087 3.913 19 C -0.573 4.573 20 H 0.078 0.922 21 C -0.195 4.195 22 N -0.573 5.573 23 Si 0.797 3.203 24 H -0.188 1.188 25 H -0.200 1.200 26 H -0.202 1.202 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.155 0.845 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.149 0.851 43 H 0.022 0.978 44 H -0.031 1.031 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.664 9.678 11.223 21.563 hybrid contribution -1.528 0.137 -0.307 1.565 sum 14.136 9.815 10.915 20.379 Atomic orbital electron populations 1.20572 0.90885 1.02376 1.02186 1.19578 0.96795 0.91216 1.06632 1.21178 0.94891 0.96682 0.97870 1.21390 0.93952 0.99137 1.03150 1.21283 1.01062 0.91364 0.97020 1.21487 0.92427 1.00703 1.08631 1.19185 0.91461 0.85544 0.97338 1.86088 1.37457 1.13116 1.87653 1.22634 0.93655 0.81879 0.98030 0.89973 1.22061 1.00650 0.99554 0.95005 1.21485 0.97670 0.92714 1.02555 1.21586 0.99838 0.99394 0.94663 1.21477 0.99068 0.94738 0.98499 1.21642 0.96027 0.94876 0.89306 0.96456 1.60689 1.32967 1.10761 1.26656 1.19177 0.84603 0.93366 0.94128 1.21527 1.08140 1.24728 1.02918 0.92160 1.25948 0.96375 0.94912 1.02296 1.70102 1.16876 1.30445 1.39918 0.85279 0.78103 0.78371 0.78513 1.18837 1.20022 1.20174 0.91122 0.93901 0.90112 0.83446 0.83211 0.83281 0.84522 0.89928 0.91966 0.90477 0.89059 0.89556 0.92564 0.90874 0.93716 0.85129 0.97793 1.03051 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.87 9.79 71.23 0.70 -2.17 16 2 C -0.14 -3.95 5.89 -19.77 -0.12 -4.07 16 3 C -0.09 -1.92 9.70 22.26 0.22 -1.71 16 4 C -0.16 -2.98 10.04 22.29 0.22 -2.75 16 5 C -0.09 -1.77 10.04 22.26 0.22 -1.55 16 6 C -0.21 -5.26 8.24 22.36 0.18 -5.08 16 7 C 0.11 3.30 6.57 22.51 0.15 3.44 16 8 O -0.33 -11.32 7.99 -92.42 -0.74 -12.05 16 9 C 0.09 2.89 1.66 30.59 0.05 2.94 16 10 H 0.08 2.42 6.32 -2.39 -0.02 2.40 16 11 C -0.13 -3.19 5.18 30.59 0.16 -3.03 16 12 C -0.11 -2.04 5.92 30.59 0.18 -1.86 16 13 C -0.12 -2.77 5.92 30.60 0.18 -2.59 16 14 C -0.10 -3.25 5.43 30.59 0.17 -3.09 16 15 C 0.09 3.50 2.21 44.91 0.10 3.59 16 16 H 0.02 0.75 7.80 -2.39 -0.02 0.73 16 17 N -0.68 -31.80 6.30 -495.56 -3.12 -34.92 16 18 C 0.21 12.25 5.24 85.56 0.45 12.70 16 19 C -0.53 -32.04 9.32 25.60 0.24 -31.80 16 20 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 21 C 0.00 0.17 5.46 84.66 0.46 0.63 16 22 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 23 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 24 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.45 7.53 -2.39 -0.02 1.43 16 29 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16 30 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 31 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 32 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.14 3.01 5.43 -2.91 -0.02 2.99 16 34 H 0.08 1.72 6.90 -2.38 -0.02 1.70 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.04 1.69 7.45 -2.39 -0.02 1.68 16 42 H 0.33 15.71 7.64 -89.69 -0.68 15.02 16 43 H 0.00 0.24 7.43 -2.39 -0.02 0.23 16 44 H -0.05 -3.01 8.06 -2.39 -0.02 -3.03 16 45 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -69.83 354.97 2.29 -67.53 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.28 Total: 25.84 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 3.56 Total: -36.39 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -2.84 Total: -92.66 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.74 Total: -12.05 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -69.83 2.29 -67.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411566174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.224 kcal (2) G-P(sol) polarization free energy of solvation -69.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds