Wall clock time and date at job start Tue Mar 31 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38168 * 120.02884 * 2 1 4 4 C 1.38245 * 120.05351 * 179.76967 * 3 2 1 5 5 C 1.38288 * 120.11587 * 0.50445 * 4 3 2 6 6 C 1.38127 * 120.05415 * 359.74548 * 5 4 3 7 7 C 1.38712 * 120.03099 * 180.27137 * 2 1 3 8 8 O 1.35902 * 120.05129 * 0.02562 * 7 2 1 9 9 C 1.42908 * 117.00008 * 174.54857 * 8 7 2 10 10 H 1.09001 * 109.46606 * 324.97128 * 9 8 7 11 11 C 1.52995 * 109.47300 * 84.96764 * 9 8 7 12 12 C 1.53008 * 109.47068 * 59.99894 * 11 9 8 13 13 C 1.53004 * 109.46601 * 60.00159 * 12 11 9 14 14 C 1.52995 * 109.47280 * 299.99712 * 13 12 11 15 15 C 1.52997 * 109.46859 * 204.96832 * 9 8 7 16 16 H 1.09000 * 109.46908 * 179.97438 * 15 9 8 17 17 N 1.46900 * 109.47016 * 60.00105 * 15 9 8 18 18 C 1.46906 * 110.99845 * 154.99672 * 17 15 9 19 19 C 1.50700 * 109.46869 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00406 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99878 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99797 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99957 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46855 * 90.00030 * 23 21 19 25 25 H 1.48498 * 109.46881 * 209.99958 * 23 21 19 26 26 H 1.48495 * 109.47107 * 330.00363 * 23 21 19 27 27 H 1.08992 * 109.47164 * 269.72488 * 1 2 3 28 28 H 1.09005 * 109.46652 * 29.72802 * 1 2 3 29 29 H 1.09005 * 109.47100 * 149.72327 * 1 2 3 30 30 H 1.07997 * 119.97010 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.94319 * 180.25055 * 4 3 2 32 32 H 1.07996 * 119.97757 * 179.73241 * 5 4 3 33 33 H 1.07999 * 120.02907 * 180.02562 * 6 5 4 34 34 H 1.08993 * 109.47194 * 179.97438 * 11 9 8 35 35 H 1.09001 * 109.47621 * 300.00228 * 11 9 8 36 36 H 1.08999 * 109.47062 * 179.97438 * 12 11 9 37 37 H 1.08999 * 109.47495 * 300.00277 * 12 11 9 38 38 H 1.08993 * 109.47477 * 60.00114 * 13 12 11 39 39 H 1.08999 * 109.46872 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.47621 * 180.02562 * 14 13 12 41 41 H 1.09007 * 109.47231 * 300.00414 * 14 13 12 42 42 H 1.00899 * 110.99964 * 278.94848 * 17 15 9 43 43 H 1.08998 * 109.47219 * 299.99396 * 18 17 15 44 44 H 1.08990 * 109.47195 * 59.99956 * 18 17 15 45 45 H 0.97003 * 119.99869 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1968 0.0048 5 6 4.2753 0.0009 -0.0009 6 6 3.5887 -1.1976 -0.0061 7 6 2.2012 -1.2009 -0.0057 8 8 1.5234 -2.3788 -0.0118 9 6 2.2985 -3.5727 -0.1384 10 1 3.1508 -3.3849 -0.7914 11 6 2.7986 -4.0048 1.2414 12 6 1.6022 -4.2682 2.1582 13 6 0.7356 -5.3779 1.5593 14 6 0.2354 -4.9458 0.1795 15 6 1.4318 -4.6823 -0.7371 16 1 2.0231 -5.5928 -0.8341 17 7 0.9516 -4.2674 -2.0620 18 6 0.6464 -5.4344 -2.9005 19 6 0.1585 -4.9703 -4.2487 20 1 0.0822 -3.9142 -4.4613 21 6 -0.1917 -5.8941 -5.2105 22 7 -0.6180 -5.4891 -6.3870 23 14 -0.0605 -7.7209 -4.8427 24 1 -1.3419 -8.2032 -4.2677 25 1 0.2276 -8.4592 -6.0985 26 1 1.0369 -7.9523 -3.8694 27 1 -0.3633 -0.0049 1.0276 28 1 -0.3633 0.8925 -0.5096 29 1 -0.3633 -0.8875 -0.5182 30 1 1.6584 2.1315 0.0004 31 1 4.1195 2.1329 0.0089 32 1 5.3552 0.0040 -0.0015 33 1 4.1314 -2.1313 -0.0102 34 1 3.3894 -4.9156 1.1449 35 1 3.4161 -3.2143 1.6681 36 1 1.9586 -4.5765 3.1410 37 1 1.0110 -3.3576 2.2547 38 1 1.3268 -6.2885 1.4627 39 1 -0.1169 -5.5652 2.2121 40 1 -0.3823 -5.7361 -0.2470 41 1 -0.3558 -4.0351 0.2760 42 1 0.1499 -3.6600 -1.9821 43 1 1.5465 -6.0358 -3.0277 44 1 -0.1267 -6.0344 -2.4207 45 1 -0.8647 -6.1390 -7.0635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411566176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:19 Heat of formation + Delta-G solvation = -30.975944 kcal Electronic energy + Delta-G solvation = -23714.015250 eV Core-core repulsion = 20502.660645 eV Total energy + Delta-G solvation = -3211.354605 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50625 -38.60069 -36.31326 -34.59599 -32.72560 -32.34279 -30.21985 -29.92007 -29.10942 -26.64675 -26.09286 -23.21602 -22.36906 -21.74286 -21.24086 -20.78795 -19.63572 -17.48012 -16.93722 -15.92798 -15.71752 -15.50760 -15.22757 -14.45054 -14.33764 -14.21456 -13.85323 -13.61460 -13.37040 -13.07829 -12.96424 -12.73457 -12.39335 -12.32739 -12.14618 -11.92608 -11.89743 -11.71644 -11.30498 -11.22541 -10.97883 -10.81456 -10.76542 -10.62832 -10.43810 -10.07913 -10.03373 -9.69337 -9.27858 -8.73513 -8.60093 -7.92966 -7.44784 -6.05528 -4.03303 1.40105 1.57074 3.27358 3.35058 3.36908 3.43190 3.85708 4.41399 4.63379 4.75826 4.85974 4.88802 4.91440 5.09978 5.19230 5.26182 5.28447 5.32778 5.35392 5.43447 5.55455 5.57879 5.60510 5.65850 5.75517 5.80881 5.85087 5.87604 5.95307 5.96619 6.15342 6.20345 6.21954 6.33234 6.38986 6.44513 6.55386 6.55647 6.61776 6.76849 6.93011 7.02000 7.60166 7.66926 7.89783 8.35111 8.65302 9.03511 9.56283 11.07896 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.004637 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.010712 B = 6036.563099 C = 6976.043996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.165 4.165 5 C -0.088 4.088 6 C -0.208 4.208 7 C 0.146 3.854 8 O -0.291 6.291 9 C 0.100 3.900 10 H 0.078 0.922 11 C -0.146 4.146 12 C -0.112 4.112 13 C -0.115 4.115 14 C -0.148 4.148 15 C 0.093 3.907 16 H 0.085 0.915 17 N -0.672 5.672 18 C 0.164 3.836 19 C -0.515 4.515 20 H 0.079 0.921 21 C 0.069 3.931 22 N -0.900 5.900 23 Si 0.877 3.123 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.267 1.267 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.342 0.658 43 H 0.024 0.976 44 H -0.019 1.019 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.859 7.731 18.666 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.122 4.122 3 C -0.104 4.104 4 C -0.183 4.183 5 C -0.106 4.106 6 C -0.227 4.227 7 C 0.100 3.900 8 O -0.204 6.204 9 C 0.043 3.957 10 H 0.096 0.904 11 C -0.184 4.184 12 C -0.150 4.150 13 C -0.153 4.153 14 C -0.187 4.187 15 C -0.019 4.019 16 H 0.104 0.896 17 N -0.301 5.301 18 C 0.037 3.963 19 C -0.553 4.553 20 H 0.097 0.903 21 C -0.133 4.133 22 N -0.539 5.539 23 Si 0.705 3.295 24 H -0.204 1.204 25 H -0.212 1.212 26 H -0.192 1.192 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.160 0.840 43 H 0.042 0.958 44 H -0.002 1.002 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.211 7.688 18.201 21.033 hybrid contribution -0.444 -1.419 0.372 1.533 sum 6.767 6.269 18.572 20.737 Atomic orbital electron populations 1.20594 0.90636 1.03082 1.01788 1.19272 0.96525 0.90454 1.05949 1.20836 0.94092 0.96693 0.98777 1.20941 0.94228 0.97829 1.05325 1.20877 0.99472 0.92028 0.98236 1.21298 0.93362 0.99300 1.08713 1.18860 0.90307 0.86194 0.94654 1.86107 1.35803 1.11863 1.86622 1.22569 0.94716 0.83186 0.95263 0.90416 1.22139 0.98430 1.01887 0.95922 1.21414 0.96541 0.99379 0.97628 1.21491 0.99164 0.98039 0.96620 1.22256 0.99054 1.02002 0.95365 1.21615 0.95450 0.94984 0.89805 0.89648 1.60539 1.40504 1.19647 1.09400 1.20038 0.94567 0.88692 0.93036 1.21058 1.42934 0.95778 0.95515 0.90310 1.24905 0.94774 0.98695 0.94925 1.69905 1.44908 1.34312 1.04792 0.86831 0.78815 0.85956 0.77916 1.20357 1.21178 1.19224 0.91898 0.91979 0.90664 0.85882 0.86428 0.86324 0.85448 0.90674 0.91463 0.92451 0.91434 0.92299 0.92314 0.91837 0.91093 0.83992 0.95756 1.00176 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 9.79 36.00 0.35 -0.92 16 2 C -0.12 -1.64 5.89 -104.47 -0.62 -2.26 16 3 C -0.09 -1.02 9.70 -39.60 -0.38 -1.40 16 4 C -0.16 -1.86 10.04 -39.56 -0.40 -2.26 16 5 C -0.09 -1.03 10.04 -39.60 -0.40 -1.43 16 6 C -0.21 -2.74 8.25 -39.43 -0.33 -3.07 16 7 C 0.15 2.12 6.57 -39.22 -0.26 1.86 16 8 O -0.29 -4.36 7.36 -19.43 -0.14 -4.51 16 9 C 0.10 1.42 2.07 -26.74 -0.06 1.36 16 10 H 0.08 1.17 6.31 -51.93 -0.33 0.84 16 11 C -0.15 -1.66 5.27 -26.73 -0.14 -1.80 16 12 C -0.11 -1.25 5.78 -26.72 -0.15 -1.40 16 13 C -0.11 -1.36 5.92 -26.73 -0.16 -1.52 16 14 C -0.15 -2.16 5.03 -26.73 -0.13 -2.30 16 15 C 0.09 1.51 2.25 -67.72 -0.15 1.35 16 16 H 0.09 1.40 7.80 -51.93 -0.40 0.99 16 17 N -0.67 -13.81 6.10 -107.99 -0.66 -14.47 16 18 C 0.16 3.96 4.31 -4.97 -0.02 3.94 16 19 C -0.51 -14.79 9.87 -34.44 -0.34 -15.13 16 20 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 21 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 22 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 23 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 29 H 0.07 1.04 7.53 -51.93 -0.39 0.64 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.13 1.55 5.43 -52.49 -0.29 1.26 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.73 6.92 -51.93 -0.36 0.37 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.01 7.45 -51.93 -0.39 0.62 16 41 H 0.07 1.07 7.67 -51.92 -0.40 0.67 16 42 H 0.34 7.12 8.46 -39.29 -0.33 6.79 16 43 H 0.02 0.60 7.11 -51.93 -0.37 0.23 16 44 H -0.02 -0.46 6.86 -51.93 -0.36 -0.82 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 350.47 15.07 5.28 5.28 Total: -1.00 -30.79 350.47 -10.10 -40.89 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.40 Total: 6.03 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -3.28 Total: -23.09 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.11 Total: -41.55 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.14 Total: -4.51 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.79 -10.10 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411566176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.912 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds