Wall clock time and date at job start Tue Mar 31 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38168 * 120.02884 * 2 1 4 4 C 1.38245 * 120.05351 * 179.76967 * 3 2 1 5 5 C 1.38288 * 120.11587 * 0.50445 * 4 3 2 6 6 C 1.38127 * 120.05415 * 359.74548 * 5 4 3 7 7 C 1.38712 * 120.03099 * 180.27137 * 2 1 3 8 8 O 1.35902 * 120.05129 * 0.02562 * 7 2 1 9 9 C 1.42908 * 117.00008 * 174.54857 * 8 7 2 10 10 H 1.09001 * 109.46606 * 324.97128 * 9 8 7 11 11 C 1.52995 * 109.47300 * 84.96764 * 9 8 7 12 12 C 1.53008 * 109.47068 * 59.99894 * 11 9 8 13 13 C 1.53004 * 109.46601 * 60.00159 * 12 11 9 14 14 C 1.52995 * 109.47280 * 299.99712 * 13 12 11 15 15 C 1.52997 * 109.46859 * 204.96832 * 9 8 7 16 16 H 1.09000 * 109.46908 * 179.97438 * 15 9 8 17 17 N 1.46900 * 109.47016 * 60.00105 * 15 9 8 18 18 C 1.46906 * 110.99845 * 154.99672 * 17 15 9 19 19 C 1.50700 * 109.46869 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00406 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99878 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99797 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99957 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46855 * 90.00030 * 23 21 19 25 25 H 1.48498 * 109.46881 * 209.99958 * 23 21 19 26 26 H 1.48495 * 109.47107 * 330.00363 * 23 21 19 27 27 H 1.08992 * 109.47164 * 269.72488 * 1 2 3 28 28 H 1.09005 * 109.46652 * 29.72802 * 1 2 3 29 29 H 1.09005 * 109.47100 * 149.72327 * 1 2 3 30 30 H 1.07997 * 119.97010 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.94319 * 180.25055 * 4 3 2 32 32 H 1.07996 * 119.97757 * 179.73241 * 5 4 3 33 33 H 1.07999 * 120.02907 * 180.02562 * 6 5 4 34 34 H 1.08993 * 109.47194 * 179.97438 * 11 9 8 35 35 H 1.09001 * 109.47621 * 300.00228 * 11 9 8 36 36 H 1.08999 * 109.47062 * 179.97438 * 12 11 9 37 37 H 1.08999 * 109.47495 * 300.00277 * 12 11 9 38 38 H 1.08993 * 109.47477 * 60.00114 * 13 12 11 39 39 H 1.08999 * 109.46872 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.47621 * 180.02562 * 14 13 12 41 41 H 1.09007 * 109.47231 * 300.00414 * 14 13 12 42 42 H 1.00899 * 110.99964 * 278.94848 * 17 15 9 43 43 H 1.08998 * 109.47219 * 299.99396 * 18 17 15 44 44 H 1.08990 * 109.47195 * 59.99956 * 18 17 15 45 45 H 0.97003 * 119.99869 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1968 0.0048 5 6 4.2753 0.0009 -0.0009 6 6 3.5887 -1.1976 -0.0061 7 6 2.2012 -1.2009 -0.0057 8 8 1.5234 -2.3788 -0.0118 9 6 2.2985 -3.5727 -0.1384 10 1 3.1508 -3.3849 -0.7914 11 6 2.7986 -4.0048 1.2414 12 6 1.6022 -4.2682 2.1582 13 6 0.7356 -5.3779 1.5593 14 6 0.2354 -4.9458 0.1795 15 6 1.4318 -4.6823 -0.7371 16 1 2.0231 -5.5928 -0.8341 17 7 0.9516 -4.2674 -2.0620 18 6 0.6464 -5.4344 -2.9005 19 6 0.1585 -4.9703 -4.2487 20 1 0.0822 -3.9142 -4.4613 21 6 -0.1917 -5.8941 -5.2105 22 7 -0.6180 -5.4891 -6.3870 23 14 -0.0605 -7.7209 -4.8427 24 1 -1.3419 -8.2032 -4.2677 25 1 0.2276 -8.4592 -6.0985 26 1 1.0369 -7.9523 -3.8694 27 1 -0.3633 -0.0049 1.0276 28 1 -0.3633 0.8925 -0.5096 29 1 -0.3633 -0.8875 -0.5182 30 1 1.6584 2.1315 0.0004 31 1 4.1195 2.1329 0.0089 32 1 5.3552 0.0040 -0.0015 33 1 4.1314 -2.1313 -0.0102 34 1 3.3894 -4.9156 1.1449 35 1 3.4161 -3.2143 1.6681 36 1 1.9586 -4.5765 3.1410 37 1 1.0110 -3.3576 2.2547 38 1 1.3268 -6.2885 1.4627 39 1 -0.1169 -5.5652 2.2121 40 1 -0.3823 -5.7361 -0.2470 41 1 -0.3558 -4.0351 0.2760 42 1 0.1499 -3.6600 -1.9821 43 1 1.5465 -6.0358 -3.0277 44 1 -0.1267 -6.0344 -2.4207 45 1 -0.8647 -6.1390 -7.0635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411566176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:18 Heat of formation + Delta-G solvation = -49.048158 kcal Electronic energy + Delta-G solvation = -23714.798920 eV Core-core repulsion = 20502.660645 eV Total energy + Delta-G solvation = -3212.138275 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.55798 -39.66121 -37.47372 -36.11182 -34.40032 -33.67666 -31.23512 -31.13159 -30.47804 -27.88773 -27.55419 -24.22231 -23.82774 -22.92873 -22.55614 -22.00317 -20.72070 -19.01225 -18.48433 -17.19670 -16.82237 -16.60157 -16.43309 -16.07747 -15.58026 -15.48534 -15.16913 -14.71685 -14.59510 -14.44748 -14.09019 -13.98715 -13.87004 -13.73425 -13.25160 -13.12820 -12.95818 -12.91991 -12.70833 -12.40191 -12.27452 -12.15509 -12.07307 -11.83296 -11.72816 -11.54763 -11.43353 -11.17275 -11.00696 -10.82190 -9.68068 -9.11542 -8.90145 -8.31270 -6.35951 0.45382 0.60639 1.32991 1.35319 1.46518 2.32676 2.38206 2.90508 3.02701 3.32792 3.71316 3.81283 3.94661 3.99324 4.07956 4.18989 4.20731 4.26780 4.38031 4.43066 4.46602 4.53302 4.59726 4.67168 4.74942 4.77943 4.83266 4.84628 4.90611 4.99641 5.04066 5.05684 5.15037 5.19040 5.23418 5.33698 5.38086 5.47605 5.51253 5.54156 5.61159 5.67285 5.94514 6.01562 6.53664 6.61271 6.66473 6.74488 7.28886 8.85883 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.004637 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.010712 B = 6036.563099 C = 6976.043996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.143 4.143 3 C -0.091 4.091 4 C -0.165 4.165 5 C -0.093 4.093 6 C -0.220 4.220 7 C 0.119 3.881 8 O -0.305 6.305 9 C 0.103 3.897 10 H 0.065 0.935 11 C -0.138 4.138 12 C -0.108 4.108 13 C -0.109 4.109 14 C -0.141 4.141 15 C 0.090 3.910 16 H 0.089 0.911 17 N -0.682 5.682 18 C 0.178 3.822 19 C -0.528 4.528 20 H 0.032 0.968 21 C 0.008 3.992 22 N -0.949 5.949 23 Si 0.953 3.047 24 H -0.266 1.266 25 H -0.281 1.281 26 H -0.248 1.248 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.133 0.867 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.336 0.664 43 H 0.026 0.974 44 H -0.013 1.013 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.274 6.997 21.043 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.144 4.144 3 C -0.108 4.108 4 C -0.183 4.183 5 C -0.111 4.111 6 C -0.238 4.238 7 C 0.073 3.927 8 O -0.218 6.218 9 C 0.046 3.954 10 H 0.083 0.917 11 C -0.176 4.176 12 C -0.145 4.145 13 C -0.147 4.147 14 C -0.181 4.181 15 C -0.020 4.020 16 H 0.107 0.893 17 N -0.311 5.311 18 C 0.050 3.950 19 C -0.567 4.567 20 H 0.050 0.950 21 C -0.190 4.190 22 N -0.589 5.589 23 Si 0.776 3.224 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.171 1.171 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.151 0.849 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.153 0.847 43 H 0.044 0.956 44 H 0.005 0.995 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.639 6.970 20.608 23.407 hybrid contribution -0.875 -1.012 -0.404 1.397 sum 7.765 5.959 20.204 22.450 Atomic orbital electron populations 1.20556 0.90376 1.02474 1.02276 1.19576 0.97116 0.90996 1.06700 1.21172 0.94735 0.96945 0.97993 1.21335 0.94187 0.98898 1.03870 1.21242 1.00850 0.91663 0.97372 1.21480 0.92996 1.00327 1.09029 1.19151 0.91146 0.86183 0.96221 1.86073 1.36378 1.12291 1.87103 1.22485 0.93546 0.82614 0.96775 0.91663 1.22101 0.98769 1.02767 0.93933 1.21387 0.96008 0.98526 0.98582 1.21468 0.99917 0.98635 0.94704 1.22149 0.97968 1.01044 0.96904 1.21743 0.96301 0.96039 0.87933 0.89304 1.60444 1.40099 1.18517 1.12048 1.19756 0.94289 0.89714 0.91287 1.21333 1.43330 0.93829 0.98162 0.95013 1.25905 0.94077 1.04560 0.94422 1.70067 1.46223 1.36458 1.06163 0.85634 0.79823 0.78630 0.78336 1.19099 1.20609 1.17134 0.90842 0.90655 0.93126 0.83613 0.83650 0.83889 0.84948 0.89105 0.90622 0.90059 0.92742 0.91162 0.91074 0.93217 0.92202 0.84686 0.95618 0.99500 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.49 9.79 71.23 0.70 -1.80 16 2 C -0.14 -3.87 5.89 -19.77 -0.12 -3.98 16 3 C -0.09 -2.02 9.70 22.25 0.22 -1.80 16 4 C -0.16 -3.36 10.04 22.28 0.22 -3.14 16 5 C -0.09 -2.02 10.04 22.26 0.22 -1.80 16 6 C -0.22 -5.65 8.25 22.37 0.18 -5.47 16 7 C 0.12 3.46 6.57 22.51 0.15 3.61 16 8 O -0.30 -9.34 7.36 -92.44 -0.68 -10.02 16 9 C 0.10 2.89 2.07 30.59 0.06 2.95 16 10 H 0.07 1.97 6.31 -2.39 -0.02 1.96 16 11 C -0.14 -2.88 5.27 30.60 0.16 -2.71 16 12 C -0.11 -2.14 5.78 30.60 0.18 -1.97 16 13 C -0.11 -2.35 5.92 30.59 0.18 -2.17 16 14 C -0.14 -4.08 5.03 30.59 0.15 -3.93 16 15 C 0.09 2.91 2.25 44.91 0.10 3.01 16 16 H 0.09 2.79 7.80 -2.39 -0.02 2.78 16 17 N -0.68 -28.86 6.10 -495.59 -3.03 -31.89 16 18 C 0.18 8.64 4.31 85.56 0.37 9.01 16 19 C -0.53 -31.48 9.87 25.60 0.25 -31.23 16 20 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 21 C 0.01 0.46 5.47 84.65 0.46 0.92 16 22 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 23 Si 0.95 44.45 27.47 68.60 1.88 46.33 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 1.61 8.08 -2.38 -0.02 1.59 16 29 H 0.05 1.48 7.53 -2.38 -0.02 1.46 16 30 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.13 3.13 5.43 -2.91 -0.02 3.12 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.48 6.92 -2.39 -0.02 1.46 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.05 1.25 7.68 -2.39 -0.02 1.23 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.05 1.55 7.45 -2.39 -0.02 1.53 16 41 H 0.06 1.84 7.67 -2.38 -0.02 1.82 16 42 H 0.34 14.77 8.46 -89.69 -0.76 14.01 16 43 H 0.03 1.25 7.11 -2.39 -0.02 1.23 16 44 H -0.01 -0.59 6.86 -2.39 -0.02 -0.61 16 45 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -68.91 350.47 2.13 -66.78 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.15 Total: 29.40 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 3.50 Total: -40.48 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -2.73 Total: -92.01 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.68 Total: -10.02 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -68.91 2.13 -66.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411566176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.728 kcal (2) G-P(sol) polarization free energy of solvation -68.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds