Wall clock time and date at job start Tue Mar 31 2020 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.89617 * 2 1 4 4 C 1.54378 * 109.83347 * 239.06344 * 2 1 3 5 5 C 1.55301 * 102.25308 * 261.84406 * 4 2 1 6 6 H 1.09001 * 111.16561 * 83.79716 * 5 4 2 7 7 N 1.46903 * 111.12514 * 207.94487 * 5 4 2 8 8 C 1.46900 * 111.00037 * 198.00788 * 7 5 4 9 9 H 1.09000 * 109.46989 * 35.00270 * 8 7 5 10 10 C 1.53001 * 109.46848 * 155.00057 * 8 7 5 11 11 C 1.50694 * 109.47168 * 295.00230 * 10 8 7 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 8 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.50701 * 109.47449 * 275.00252 * 8 7 5 20 20 C 1.38236 * 119.99946 * 319.72540 * 19 8 7 21 21 C 1.38230 * 119.99884 * 179.76318 * 20 19 8 22 22 C 1.38230 * 120.00352 * 0.49145 * 21 20 19 23 23 C 1.38237 * 119.99642 * 359.78651 * 22 21 20 24 24 C 1.38227 * 120.00009 * 139.99970 * 19 8 7 25 25 C 1.54943 * 100.94281 * 325.86550 * 5 4 2 26 26 O 1.43238 * 109.83026 * 120.92560 * 2 1 3 27 27 H 1.08999 * 109.47720 * 300.52503 * 1 2 3 28 28 H 1.09003 * 109.47453 * 60.52288 * 1 2 3 29 29 H 1.09003 * 109.47163 * 180.52674 * 1 2 3 30 30 H 1.09001 * 109.47400 * 179.48355 * 3 2 1 31 31 H 1.09005 * 109.46972 * 299.47805 * 3 2 1 32 32 H 1.08997 * 109.47815 * 59.47380 * 3 2 1 33 33 H 1.08999 * 110.85107 * 143.64946 * 4 2 1 34 34 H 1.09002 * 110.84585 * 20.03194 * 4 2 1 35 35 H 1.00905 * 110.99752 * 74.06102 * 7 5 4 36 36 H 1.09007 * 109.46922 * 174.99931 * 10 8 7 37 37 H 1.09003 * 109.46836 * 55.00687 * 10 8 7 38 38 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 39 39 H 1.08001 * 119.99844 * 359.97438 * 20 19 8 40 40 H 1.07999 * 119.99808 * 180.25263 * 21 20 19 41 41 H 1.08001 * 120.00669 * 179.76757 * 22 21 20 42 42 H 1.08003 * 119.99666 * 179.97438 * 23 22 21 43 43 H 1.07999 * 120.00432 * 0.02562 * 24 19 8 44 44 H 1.08998 * 110.31346 * 155.36114 * 25 5 4 45 45 H 1.09003 * 110.30824 * 277.53139 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0506 1.4387 0.0000 4 6 2.0537 -0.7466 -1.2456 5 6 2.3681 -2.1570 -0.6766 6 1 1.4735 -2.7791 -0.6504 7 7 3.4403 -2.8091 -1.4403 8 6 3.4512 -4.2583 -1.2001 9 1 2.4286 -4.6130 -1.0717 10 6 4.0911 -4.9683 -2.3948 11 6 3.2296 -4.7730 -3.6156 12 1 2.3171 -4.1994 -3.5466 13 6 3.6063 -5.3266 -4.8210 14 7 4.7177 -6.0246 -4.9053 15 14 2.5380 -5.0850 -6.3342 16 1 3.1591 -5.7741 -7.4938 17 1 1.1894 -5.6540 -6.0840 18 1 2.4166 -3.6344 -6.6279 19 6 4.2460 -4.5551 0.0454 20 6 5.4165 -3.8649 0.2993 21 6 6.1429 -4.1337 1.4442 22 6 5.7043 -5.0999 2.3301 23 6 4.5369 -5.7942 2.0733 24 6 3.8076 -5.5216 0.9311 25 6 2.8407 -1.7980 0.7547 26 8 2.0159 -0.6925 1.1559 27 1 -0.3634 0.5219 0.8852 28 1 -0.3634 0.5057 -0.8946 29 1 -0.3634 -1.0276 0.0094 30 1 3.1406 1.4306 0.0093 31 1 1.6987 1.9524 -0.8947 32 1 1.6835 1.9580 0.8852 33 1 2.9571 -0.2732 -1.6303 34 1 1.2851 -0.8018 -2.0165 35 1 4.3374 -2.4002 -1.2254 36 1 4.1802 -6.0332 -2.1795 37 1 5.0812 -4.5507 -2.5780 38 1 4.9825 -6.4144 -5.7531 39 1 5.7615 -3.1132 -0.3951 40 1 7.0552 -3.5916 1.6446 41 1 6.2739 -5.3127 3.2228 42 1 4.1944 -6.5494 2.7653 43 1 2.8957 -6.0643 0.7303 44 1 2.6919 -2.6441 1.4256 45 1 3.8899 -1.5028 0.7438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417948759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:48 Heat of formation + Delta-G solvation = -29.896239 kcal Electronic energy + Delta-G solvation = -23738.314291 eV Core-core repulsion = 20527.006506 eV Total energy + Delta-G solvation = -3211.307786 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03573 -39.00090 -35.95034 -33.09882 -32.92927 -31.64164 -30.63669 -29.18583 -27.68632 -27.35017 -25.54079 -24.39950 -22.49621 -21.89737 -20.83146 -19.97311 -19.74627 -17.09993 -16.12300 -16.05216 -15.75374 -15.04166 -14.81206 -14.62347 -14.46230 -13.89531 -13.56701 -13.39719 -13.33066 -13.01528 -12.79931 -12.64355 -12.45609 -12.21490 -12.06125 -11.82361 -11.62922 -11.45005 -11.13071 -11.02775 -10.91455 -10.76684 -10.65073 -10.51654 -10.33698 -10.16969 -9.65504 -9.46149 -9.05639 -8.64402 -8.29300 -8.23880 -7.79939 -5.90726 -3.89408 1.66711 1.67787 3.38874 3.43095 3.45956 3.81560 4.08734 4.53943 4.63819 4.69790 4.92387 5.02743 5.11929 5.17690 5.18807 5.22885 5.29963 5.36855 5.41809 5.46534 5.57950 5.68801 5.71063 5.79087 5.81940 5.86122 5.89159 5.91456 6.06095 6.13101 6.16664 6.19816 6.28276 6.34189 6.36698 6.72613 6.74754 6.77120 6.93631 7.17596 7.29364 7.45900 7.60845 7.89996 7.94521 8.09439 8.52346 9.15116 9.71966 11.20979 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.009986 B = 0.006438 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.374873 B = 4348.364716 C = 6600.599824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.097 3.903 3 C -0.152 4.152 4 C -0.135 4.135 5 C 0.060 3.940 6 H 0.091 0.909 7 N -0.643 5.643 8 C 0.128 3.872 9 H 0.076 0.924 10 C 0.042 3.958 11 C -0.492 4.492 12 H 0.059 0.941 13 C 0.052 3.948 14 N -0.902 5.902 15 Si 0.891 3.109 16 H -0.290 1.290 17 H -0.279 1.279 18 H -0.278 1.278 19 C -0.091 4.091 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.136 4.136 23 C -0.120 4.120 24 C -0.117 4.117 25 C 0.025 3.975 26 O -0.377 6.377 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.335 0.665 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.258 0.742 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.079 0.921 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.897 8.947 13.099 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.057 3.943 3 C -0.209 4.209 4 C -0.173 4.173 5 C -0.051 4.051 6 H 0.109 0.891 7 N -0.273 5.273 8 C 0.019 3.981 9 H 0.094 0.906 10 C 0.005 3.995 11 C -0.530 4.530 12 H 0.077 0.923 13 C -0.148 4.148 14 N -0.542 5.542 15 Si 0.719 3.281 16 H -0.216 1.216 17 H -0.205 1.205 18 H -0.204 1.204 19 C -0.093 4.093 20 C -0.138 4.138 21 C -0.136 4.136 22 C -0.154 4.154 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.054 4.054 26 O -0.296 6.296 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.156 0.844 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.097 0.903 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.213 8.875 12.570 15.719 hybrid contribution 0.062 -0.117 -0.160 0.208 sum -3.151 8.757 12.410 15.512 Atomic orbital electron populations 1.22057 0.94278 1.02536 1.01922 1.22097 0.94008 0.92439 0.85717 1.22080 1.01481 0.95366 1.01969 1.23143 1.02362 0.94918 0.96863 1.23326 0.96611 0.95499 0.89704 0.89054 1.60635 1.06466 1.03340 1.56874 1.21054 0.98208 0.87193 0.91671 0.90612 1.19089 0.96084 0.94282 0.90035 1.21057 1.07576 1.31174 0.93229 0.92290 1.24993 0.95250 0.95683 0.98843 1.69959 1.23016 1.35620 1.25613 0.86684 0.80544 0.78192 0.82657 1.21626 1.20529 1.20362 1.21146 0.95967 0.95384 0.96801 1.20945 0.95063 1.00654 0.97160 1.21047 0.99520 0.98244 0.94797 1.21013 0.97125 0.97539 0.99694 1.21086 0.95525 0.99646 0.97535 1.21074 1.00296 0.97951 0.94244 1.24245 0.94391 0.88962 0.97792 1.88392 1.67261 1.43879 1.30082 0.92350 0.91592 0.92098 0.92310 0.91607 0.92330 0.90145 0.89690 0.84375 0.96208 0.96256 0.93208 0.86314 0.86613 0.86777 0.86638 0.86267 0.90275 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.73 37.15 0.32 -1.35 16 2 C 0.10 1.22 1.27 -89.90 -0.11 1.10 16 3 C -0.15 -1.65 8.75 37.16 0.32 -1.32 16 4 C -0.13 -1.83 5.79 -24.79 -0.14 -1.97 16 5 C 0.06 0.91 3.36 -65.47 -0.22 0.69 16 6 H 0.09 1.44 7.57 -51.93 -0.39 1.05 16 7 N -0.64 -11.29 5.87 -98.61 -0.58 -11.87 16 8 C 0.13 2.46 2.17 -68.86 -0.15 2.31 16 9 H 0.08 1.48 7.37 -51.93 -0.38 1.10 16 10 C 0.04 1.05 4.63 -27.89 -0.13 0.92 16 11 C -0.49 -13.44 8.84 -34.44 -0.30 -13.75 16 12 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 13 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 14 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 15 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C -0.09 -1.54 3.83 -104.63 -0.40 -1.94 16 20 C -0.12 -1.87 8.61 -39.59 -0.34 -2.21 16 21 C -0.12 -1.63 10.05 -39.59 -0.40 -2.03 16 22 C -0.14 -1.79 10.05 -39.58 -0.40 -2.19 16 23 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 24 C -0.12 -1.83 9.67 -39.59 -0.38 -2.21 16 25 C 0.02 0.36 6.27 38.18 0.24 0.59 16 26 O -0.38 -5.56 10.68 -35.23 -0.38 -5.94 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.09 7.85 -51.93 -0.41 0.69 16 34 H 0.08 1.14 7.82 -51.93 -0.41 0.74 16 35 H 0.34 5.56 5.93 -39.29 -0.23 5.32 16 36 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.12 1.80 6.53 -52.49 -0.34 1.46 16 40 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 43 H 0.12 1.76 8.04 -52.49 -0.42 1.34 16 44 H 0.08 1.17 7.93 -51.93 -0.41 0.76 16 45 H 0.06 0.79 7.57 -51.93 -0.39 0.40 16 LS Contribution 360.17 15.07 5.43 5.43 Total: -1.00 -30.02 360.17 -9.98 -40.00 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.58 Total: 5.86 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -2.59 Total: -24.03 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.16 Total: -38.07 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.38 Total: -5.94 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.02 -9.98 -40.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417948759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.106 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds