Wall clock time and date at job start Tue Mar 31 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.89617 * 2 1 4 4 C 1.54378 * 109.83347 * 239.06344 * 2 1 3 5 5 C 1.55301 * 102.25308 * 261.84406 * 4 2 1 6 6 H 1.09001 * 111.16561 * 83.79716 * 5 4 2 7 7 N 1.46903 * 111.12514 * 207.94487 * 5 4 2 8 8 C 1.46900 * 111.00037 * 198.00788 * 7 5 4 9 9 H 1.09000 * 109.46989 * 35.00270 * 8 7 5 10 10 C 1.53001 * 109.46848 * 155.00057 * 8 7 5 11 11 C 1.50694 * 109.47168 * 295.00230 * 10 8 7 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 8 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.50701 * 109.47449 * 275.00252 * 8 7 5 20 20 C 1.38236 * 119.99946 * 319.72540 * 19 8 7 21 21 C 1.38230 * 119.99884 * 179.76318 * 20 19 8 22 22 C 1.38230 * 120.00352 * 0.49145 * 21 20 19 23 23 C 1.38237 * 119.99642 * 359.78651 * 22 21 20 24 24 C 1.38227 * 120.00009 * 139.99970 * 19 8 7 25 25 C 1.54943 * 100.94281 * 325.86550 * 5 4 2 26 26 O 1.43238 * 109.83026 * 120.92560 * 2 1 3 27 27 H 1.08999 * 109.47720 * 300.52503 * 1 2 3 28 28 H 1.09003 * 109.47453 * 60.52288 * 1 2 3 29 29 H 1.09003 * 109.47163 * 180.52674 * 1 2 3 30 30 H 1.09001 * 109.47400 * 179.48355 * 3 2 1 31 31 H 1.09005 * 109.46972 * 299.47805 * 3 2 1 32 32 H 1.08997 * 109.47815 * 59.47380 * 3 2 1 33 33 H 1.08999 * 110.85107 * 143.64946 * 4 2 1 34 34 H 1.09002 * 110.84585 * 20.03194 * 4 2 1 35 35 H 1.00905 * 110.99752 * 74.06102 * 7 5 4 36 36 H 1.09007 * 109.46922 * 174.99931 * 10 8 7 37 37 H 1.09003 * 109.46836 * 55.00687 * 10 8 7 38 38 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 39 39 H 1.08001 * 119.99844 * 359.97438 * 20 19 8 40 40 H 1.07999 * 119.99808 * 180.25263 * 21 20 19 41 41 H 1.08001 * 120.00669 * 179.76757 * 22 21 20 42 42 H 1.08003 * 119.99666 * 179.97438 * 23 22 21 43 43 H 1.07999 * 120.00432 * 0.02562 * 24 19 8 44 44 H 1.08998 * 110.31346 * 155.36114 * 25 5 4 45 45 H 1.09003 * 110.30824 * 277.53139 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0506 1.4387 0.0000 4 6 2.0537 -0.7466 -1.2456 5 6 2.3681 -2.1570 -0.6766 6 1 1.4735 -2.7791 -0.6504 7 7 3.4403 -2.8091 -1.4403 8 6 3.4512 -4.2583 -1.2001 9 1 2.4286 -4.6130 -1.0717 10 6 4.0911 -4.9683 -2.3948 11 6 3.2296 -4.7730 -3.6156 12 1 2.3171 -4.1994 -3.5466 13 6 3.6063 -5.3266 -4.8210 14 7 4.7177 -6.0246 -4.9053 15 14 2.5380 -5.0850 -6.3342 16 1 3.1591 -5.7741 -7.4938 17 1 1.1894 -5.6540 -6.0840 18 1 2.4166 -3.6344 -6.6279 19 6 4.2460 -4.5551 0.0454 20 6 5.4165 -3.8649 0.2993 21 6 6.1429 -4.1337 1.4442 22 6 5.7043 -5.0999 2.3301 23 6 4.5369 -5.7942 2.0733 24 6 3.8076 -5.5216 0.9311 25 6 2.8407 -1.7980 0.7547 26 8 2.0159 -0.6925 1.1559 27 1 -0.3634 0.5219 0.8852 28 1 -0.3634 0.5057 -0.8946 29 1 -0.3634 -1.0276 0.0094 30 1 3.1406 1.4306 0.0093 31 1 1.6987 1.9524 -0.8947 32 1 1.6835 1.9580 0.8852 33 1 2.9571 -0.2732 -1.6303 34 1 1.2851 -0.8018 -2.0165 35 1 4.3374 -2.4002 -1.2254 36 1 4.1802 -6.0332 -2.1795 37 1 5.0812 -4.5507 -2.5780 38 1 4.9825 -6.4144 -5.7531 39 1 5.7615 -3.1132 -0.3951 40 1 7.0552 -3.5916 1.6446 41 1 6.2739 -5.3127 3.2228 42 1 4.1944 -6.5494 2.7653 43 1 2.8957 -6.0643 0.7303 44 1 2.6919 -2.6441 1.4256 45 1 3.8899 -1.5028 0.7438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417948759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:47 Heat of formation + Delta-G solvation = -46.805396 kcal Electronic energy + Delta-G solvation = -23739.047527 eV Core-core repulsion = 20527.006506 eV Total energy + Delta-G solvation = -3212.041022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21206 -40.16298 -37.32492 -34.91117 -34.10505 -33.08867 -31.77321 -30.64736 -29.25023 -28.22747 -26.66419 -26.13619 -23.81307 -23.35804 -22.05734 -21.26027 -20.94869 -18.64451 -17.81531 -17.22895 -16.98349 -16.46570 -16.22081 -15.99276 -15.77026 -15.12107 -14.73887 -14.59073 -14.40312 -14.31140 -14.17353 -13.99502 -13.79532 -13.59904 -13.29555 -13.00893 -12.78753 -12.75830 -12.63964 -12.47583 -12.35281 -12.27939 -12.08572 -11.81820 -11.76014 -11.58072 -11.31620 -11.11697 -10.54589 -10.48460 -9.78576 -9.53533 -9.17757 -8.09256 -6.15011 0.50004 0.52948 1.42673 1.45308 1.52611 2.47580 2.70062 2.93198 3.22943 3.40073 3.59915 3.81898 3.91279 3.98959 4.01780 4.12308 4.16178 4.19453 4.28090 4.31018 4.49127 4.65978 4.67288 4.71024 4.74761 4.77044 4.84313 4.91077 4.95881 4.99046 5.05759 5.11496 5.15245 5.18113 5.27485 5.40485 5.48608 5.58822 5.61303 5.63696 5.70530 5.88748 6.10593 6.15872 6.27226 6.40034 6.56531 6.98111 7.50705 9.02445 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.009986 B = 0.006438 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.374873 B = 4348.364716 C = 6600.599824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.094 3.906 3 C -0.149 4.149 4 C -0.131 4.131 5 C 0.062 3.938 6 H 0.082 0.918 7 N -0.655 5.655 8 C 0.145 3.855 9 H 0.066 0.934 10 C 0.053 3.947 11 C -0.500 4.500 12 H 0.060 0.940 13 C -0.004 4.004 14 N -0.939 5.939 15 Si 0.957 3.043 16 H -0.289 1.289 17 H -0.270 1.270 18 H -0.270 1.270 19 C -0.111 4.111 20 C -0.132 4.132 21 C -0.120 4.120 22 C -0.130 4.130 23 C -0.120 4.120 24 C -0.133 4.133 25 C 0.038 3.962 26 O -0.390 6.390 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.340 0.660 36 H -0.012 1.012 37 H -0.009 1.009 38 H 0.259 0.741 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.119 0.881 44 H 0.073 0.927 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.400 10.139 14.262 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.055 3.945 3 C -0.206 4.206 4 C -0.169 4.169 5 C -0.049 4.049 6 H 0.100 0.900 7 N -0.286 5.286 8 C 0.036 3.964 9 H 0.084 0.916 10 C 0.015 3.985 11 C -0.538 4.538 12 H 0.078 0.922 13 C -0.200 4.200 14 N -0.581 5.581 15 Si 0.783 3.217 16 H -0.214 1.214 17 H -0.195 1.195 18 H -0.195 1.195 19 C -0.112 4.112 20 C -0.151 4.151 21 C -0.138 4.138 22 C -0.148 4.148 23 C -0.138 4.138 24 C -0.152 4.152 25 C -0.040 4.040 26 O -0.310 6.310 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.161 0.839 36 H 0.006 0.994 37 H 0.010 0.990 38 H 0.067 0.933 39 H 0.133 0.867 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.137 0.863 44 H 0.091 0.909 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.732 10.083 13.747 17.452 hybrid contribution 0.252 -0.499 -0.454 0.721 sum -3.480 9.583 13.293 16.752 Atomic orbital electron populations 1.22064 0.93110 1.02336 1.03147 1.22277 0.94951 0.93011 0.84310 1.22070 1.01228 0.94176 1.03137 1.23138 1.02456 0.93852 0.97495 1.23265 0.95318 0.95972 0.90379 0.90029 1.60512 1.07437 1.02554 1.58066 1.20522 0.97366 0.87818 0.90726 0.91570 1.18862 0.94802 0.92819 0.91991 1.21412 1.07665 1.30503 0.94263 0.92222 1.25858 0.96529 0.95490 1.02151 1.70101 1.24847 1.36856 1.26329 0.85619 0.78965 0.78395 0.78712 1.21444 1.19519 1.19530 1.20896 0.96779 0.97105 0.96468 1.21028 0.95023 1.00834 0.98165 1.21381 1.00040 0.98411 0.93927 1.21448 0.96750 0.96293 1.00340 1.21419 0.95392 0.99977 0.96989 1.21227 1.00955 0.97872 0.95148 1.24028 0.94388 0.88826 0.96800 1.88378 1.67418 1.43949 1.31230 0.91637 0.89879 0.93027 0.92729 0.89925 0.91693 0.90184 0.89528 0.83927 0.99404 0.99025 0.93280 0.86656 0.84034 0.83445 0.83912 0.86295 0.90898 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.73 71.98 0.63 -2.44 16 2 C 0.09 2.22 1.27 -10.33 -0.01 2.20 16 3 C -0.15 -2.92 8.75 71.98 0.63 -2.29 16 4 C -0.13 -3.46 5.79 31.85 0.18 -3.28 16 5 C 0.06 1.88 3.36 46.37 0.16 2.04 16 6 H 0.08 2.63 7.57 -2.39 -0.02 2.61 16 7 N -0.65 -23.61 5.87 -465.88 -2.73 -26.35 16 8 C 0.15 5.83 2.17 44.17 0.10 5.93 16 9 H 0.07 2.72 7.37 -2.39 -0.02 2.70 16 10 C 0.05 2.74 4.63 29.85 0.14 2.88 16 11 C -0.50 -28.11 8.84 25.60 0.23 -27.89 16 12 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 13 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 14 N -0.94 -57.75 13.29 21.45 0.28 -57.46 16 15 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 16 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 19 C -0.11 -3.83 3.83 -19.87 -0.08 -3.90 16 20 C -0.13 -4.13 8.61 22.27 0.19 -3.94 16 21 C -0.12 -3.09 10.05 22.27 0.22 -2.87 16 22 C -0.13 -3.08 10.05 22.27 0.22 -2.86 16 23 C -0.12 -3.07 10.05 22.27 0.22 -2.85 16 24 C -0.13 -4.18 9.67 22.27 0.22 -3.96 16 25 C 0.04 1.08 6.27 72.65 0.46 1.54 16 26 O -0.39 -11.10 10.68 -148.98 -1.59 -12.69 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 2.11 7.85 -2.39 -0.02 2.09 16 34 H 0.09 2.24 7.82 -2.39 -0.02 2.23 16 35 H 0.34 11.58 5.93 -89.69 -0.53 11.05 16 36 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 37 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.12 3.58 6.53 -2.91 -0.02 3.56 16 40 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 41 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 42 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 43 H 0.12 3.60 8.04 -2.91 -0.02 3.57 16 44 H 0.07 2.16 7.93 -2.39 -0.02 2.14 16 45 H 0.06 1.61 7.57 -2.39 -0.02 1.59 16 Total: -1.00 -65.69 360.17 2.37 -63.32 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.42 Total: 27.50 kcal Atomic # 6 Polarization: -45.42 SS G_CDS: 3.96 Total: -41.46 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -2.45 Total: -83.81 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -1.59 Total: -12.69 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -65.69 2.37 -63.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417948759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.515 kcal (2) G-P(sol) polarization free energy of solvation -65.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds