Wall clock time and date at job start Tue Mar 31 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.99043 * 2 1 4 4 C 1.54103 * 109.88221 * 238.91332 * 2 1 3 5 5 C 1.54813 * 104.18589 * 242.60601 * 4 2 1 6 6 H 1.09005 * 110.93383 * 262.66463 * 5 4 2 7 7 N 1.46902 * 110.90349 * 139.07613 * 5 4 2 8 8 C 1.46904 * 110.99701 * 160.83571 * 7 5 4 9 9 H 1.09002 * 109.46754 * 35.00424 * 8 7 5 10 10 C 1.52999 * 109.46990 * 154.99865 * 8 7 5 11 11 C 1.50695 * 109.47057 * 295.00346 * 10 8 7 12 12 H 1.07999 * 120.00538 * 359.97438 * 11 10 8 13 13 C 1.37881 * 119.99661 * 179.97438 * 11 10 8 14 14 N 1.31520 * 120.00186 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00030 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.50703 * 109.47321 * 275.00198 * 8 7 5 20 20 C 1.38235 * 119.99760 * 319.72537 * 19 8 7 21 21 C 1.38234 * 119.99785 * 179.81055 * 20 19 8 22 22 C 1.38240 * 119.99704 * 0.41988 * 21 20 19 23 23 C 1.38230 * 120.00183 * 359.81421 * 22 21 20 24 24 C 1.38231 * 120.00057 * 359.97438 * 23 22 21 25 25 C 1.54992 * 102.09526 * 20.87912 * 5 4 2 26 26 O 1.43747 * 109.88223 * 121.07969 * 2 1 3 27 27 H 1.09002 * 109.47171 * 300.36914 * 1 2 3 28 28 H 1.08998 * 109.47317 * 60.37559 * 1 2 3 29 29 H 1.09008 * 109.46560 * 180.37438 * 1 2 3 30 30 H 1.08995 * 109.47450 * 179.62903 * 3 2 1 31 31 H 1.09000 * 109.46883 * 299.62736 * 3 2 1 32 32 H 1.09003 * 109.47574 * 59.62839 * 3 2 1 33 33 H 1.08995 * 110.48768 * 123.92423 * 4 2 1 34 34 H 1.09000 * 110.47926 * 1.27898 * 4 2 1 35 35 H 1.00895 * 111.00141 * 284.78926 * 7 5 4 36 36 H 1.09002 * 109.46997 * 174.99908 * 10 8 7 37 37 H 1.09000 * 109.46625 * 55.00333 * 10 8 7 38 38 H 0.97001 * 119.99697 * 359.97438 * 14 13 11 39 39 H 1.08000 * 120.00048 * 0.02562 * 20 19 8 40 40 H 1.08000 * 119.99961 * 180.21051 * 21 20 19 41 41 H 1.08010 * 119.99611 * 179.78897 * 22 21 20 42 42 H 1.07996 * 120.00061 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.00050 * 179.97438 * 24 23 22 44 44 H 1.08996 * 110.62062 * 81.47340 * 25 5 4 45 45 H 1.08998 * 110.61850 * 204.47898 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4378 0.0000 4 6 2.0541 -0.7483 -1.2411 5 6 2.8325 -1.9524 -0.6574 6 1 3.9005 -1.7396 -0.6097 7 7 2.5774 -3.1699 -1.4388 8 6 3.6193 -4.1774 -1.1988 9 1 3.9467 -4.1212 -0.1606 10 6 3.0553 -5.5714 -1.4807 11 6 1.9641 -5.8819 -0.4888 12 1 1.6997 -5.1577 0.2675 13 6 1.3034 -7.0907 -0.5467 14 7 1.6251 -7.9726 -1.4679 15 14 -0.0486 -7.4760 0.6834 16 1 -1.3542 -7.0188 0.1432 17 1 0.2309 -6.7746 1.9621 18 1 -0.0975 -8.9408 0.9227 19 6 4.7907 -3.9157 -2.1099 20 6 4.5749 -3.5314 -3.4201 21 6 5.6495 -3.2875 -4.2548 22 6 6.9398 -3.4364 -3.7817 23 6 7.1556 -3.8253 -2.4730 24 6 6.0811 -4.0650 -1.6370 25 6 2.2281 -2.0713 0.7649 26 8 2.0189 -0.6978 1.1577 27 1 -0.3634 0.5196 0.8867 28 1 -0.3634 0.5080 -0.8933 29 1 -0.3633 -1.0277 0.0067 30 1 3.1429 1.4280 0.0067 31 1 1.6998 1.9529 -0.8933 32 1 1.6890 1.9570 0.8866 33 1 2.7197 -0.1079 -1.8198 34 1 1.2238 -1.0932 -1.8573 35 1 1.6613 -3.5425 -1.2391 36 1 3.8510 -6.3107 -1.3889 37 1 2.6470 -5.6006 -2.4910 38 1 2.3270 -7.7723 -2.1068 39 1 3.5667 -3.4184 -3.7906 40 1 5.4808 -2.9840 -5.2775 41 1 7.7794 -3.2491 -4.4349 42 1 8.1637 -3.9420 -2.1035 43 1 6.2496 -4.3693 -0.6146 44 1 1.2814 -2.6107 0.7358 45 1 2.9296 -2.5611 1.4403 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417948760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:50 Heat of formation + Delta-G solvation = -40.840546 kcal Electronic energy + Delta-G solvation = -23690.273988 eV Core-core repulsion = 20478.491621 eV Total energy + Delta-G solvation = -3211.782367 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.92254 -38.90005 -36.05726 -33.24907 -33.00328 -31.69435 -30.49962 -29.18609 -27.42019 -27.29284 -25.55597 -24.25288 -22.28816 -21.99119 -20.81752 -20.03283 -19.78369 -16.88257 -16.40762 -16.07965 -15.72199 -15.16911 -14.96532 -14.64761 -14.07533 -13.80855 -13.74192 -13.35231 -13.21475 -12.99315 -12.83337 -12.65119 -12.34360 -12.30263 -12.00548 -11.81468 -11.59480 -11.52455 -11.32750 -11.11755 -10.78833 -10.69237 -10.58344 -10.51787 -10.33907 -10.19339 -9.92975 -9.54574 -8.74833 -8.53808 -8.41244 -8.15651 -7.88114 -6.43985 -4.15588 1.75958 1.81548 3.38309 3.41308 3.56309 3.89883 4.19902 4.47117 4.69239 4.74568 4.86170 5.03029 5.18715 5.21559 5.25812 5.30033 5.34725 5.41730 5.45217 5.56537 5.57118 5.68713 5.71007 5.86857 5.89941 5.92394 5.93786 5.96247 6.08541 6.13909 6.17916 6.23831 6.32377 6.33161 6.43815 6.54278 6.81931 6.87662 7.02445 7.12646 7.21211 7.29920 7.41717 7.76547 7.99819 8.07125 8.34438 8.78109 9.57228 10.96277 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.008587 B = 0.007331 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3259.926612 B = 3818.511107 C = 6491.468831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.094 3.906 3 C -0.140 4.140 4 C -0.135 4.135 5 C 0.062 3.938 6 H 0.085 0.915 7 N -0.666 5.666 8 C 0.135 3.865 9 H 0.043 0.957 10 C 0.015 3.985 11 C -0.607 4.607 12 H 0.048 0.952 13 C 0.021 3.979 14 N -0.907 5.907 15 Si 1.067 2.933 16 H -0.287 1.287 17 H -0.289 1.289 18 H -0.284 1.284 19 C -0.058 4.058 20 C -0.088 4.088 21 C -0.130 4.130 22 C -0.136 4.136 23 C -0.127 4.127 24 C -0.124 4.124 25 C 0.019 3.981 26 O -0.372 6.372 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.361 0.639 36 H 0.014 0.986 37 H 0.019 0.981 38 H 0.271 0.729 39 H 0.127 0.873 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.065 0.935 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.063 14.916 -0.993 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.054 3.946 3 C -0.198 4.198 4 C -0.173 4.173 5 C -0.049 4.049 6 H 0.103 0.897 7 N -0.300 5.300 8 C 0.025 3.975 9 H 0.061 0.939 10 C -0.022 4.022 11 C -0.645 4.645 12 H 0.066 0.934 13 C -0.184 4.184 14 N -0.542 5.542 15 Si 0.895 3.105 16 H -0.214 1.214 17 H -0.215 1.215 18 H -0.210 1.210 19 C -0.059 4.059 20 C -0.106 4.106 21 C -0.148 4.148 22 C -0.154 4.154 23 C -0.145 4.145 24 C -0.142 4.142 25 C -0.060 4.060 26 O -0.291 6.291 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.184 0.816 36 H 0.032 0.968 37 H 0.038 0.962 38 H 0.081 0.919 39 H 0.145 0.855 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.083 0.917 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.276 14.080 -0.901 14.484 hybrid contribution 0.918 0.680 0.290 1.179 sum 4.194 14.760 -0.611 15.357 Atomic orbital electron populations 1.22243 0.95081 1.02646 1.01976 1.22122 0.93568 0.93050 0.85859 1.21875 1.01579 0.94321 1.01996 1.22979 1.00809 0.96518 0.97019 1.23065 0.99686 0.91721 0.90436 0.89716 1.60473 1.07255 1.05082 1.57210 1.20491 0.88794 0.93632 0.94573 0.93899 1.19373 0.95906 0.89235 0.97690 1.21953 1.21109 1.04563 1.16867 0.93423 1.25762 1.00371 0.92803 0.99465 1.70743 1.30535 1.36545 1.16426 0.83571 0.75508 0.76328 0.75089 1.21367 1.21520 1.20951 1.20211 0.94209 0.96280 0.95167 1.21039 0.99065 0.97445 0.93079 1.21134 0.92916 1.01324 0.99418 1.20996 0.96737 1.01860 0.95817 1.20984 0.98326 1.00961 0.94210 1.21050 0.92427 1.00952 0.99781 1.24364 1.00459 0.83685 0.97486 1.88857 1.86099 1.20935 1.33180 0.92272 0.91754 0.92049 0.92064 0.91501 0.92250 0.90662 0.89835 0.81643 0.96778 0.96245 0.91862 0.85461 0.86807 0.86982 0.86835 0.86704 0.91713 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.61 37.16 0.32 -1.59 16 2 C 0.09 1.21 1.19 -90.05 -0.11 1.11 16 3 C -0.14 -1.52 8.67 37.16 0.32 -1.20 16 4 C -0.13 -1.80 6.02 -25.20 -0.15 -1.95 16 5 C 0.06 0.97 3.19 -65.70 -0.21 0.76 16 6 H 0.08 1.37 7.76 -51.93 -0.40 0.97 16 7 N -0.67 -11.79 5.37 -98.85 -0.53 -12.32 16 8 C 0.13 2.64 2.07 -68.86 -0.14 2.50 16 9 H 0.04 0.87 7.62 -51.93 -0.40 0.48 16 10 C 0.02 0.37 3.86 -27.89 -0.11 0.26 16 11 C -0.61 -15.94 8.12 -34.44 -0.28 -16.21 16 12 H 0.05 1.22 7.49 -52.49 -0.39 0.82 16 13 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 14 N -0.91 -26.92 13.65 55.43 0.76 -26.17 16 15 Si 1.07 24.51 29.90 -169.99 -5.08 19.43 16 16 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.06 -1.05 4.65 -104.62 -0.49 -1.53 16 20 C -0.09 -1.50 9.32 -39.58 -0.37 -1.87 16 21 C -0.13 -1.93 10.05 -39.58 -0.40 -2.32 16 22 C -0.14 -1.90 10.05 -39.58 -0.40 -2.30 16 23 C -0.13 -1.85 10.05 -39.59 -0.40 -2.25 16 24 C -0.12 -2.06 9.67 -39.59 -0.38 -2.44 16 25 C 0.02 0.30 7.12 38.21 0.27 0.57 16 26 O -0.37 -5.84 10.86 -35.23 -0.38 -6.22 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.78 8.13 -51.92 -0.42 0.36 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.93 7.70 -51.93 -0.40 0.53 16 34 H 0.08 1.12 7.61 -51.93 -0.40 0.73 16 35 H 0.36 6.98 6.79 -39.29 -0.27 6.71 16 36 H 0.01 0.37 8.01 -51.93 -0.42 -0.05 16 37 H 0.02 0.50 8.01 -51.93 -0.42 0.08 16 38 H 0.27 8.07 7.22 -40.82 -0.29 7.77 16 39 H 0.13 2.21 7.73 -52.49 -0.41 1.81 16 40 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 41 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 42 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.11 1.81 8.04 -52.49 -0.42 1.39 16 44 H 0.06 1.08 7.80 -51.93 -0.41 0.68 16 45 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -28.70 362.12 -10.03 -38.73 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -7.63 Total: 9.09 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: -2.61 Total: -27.99 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.23 Total: -38.49 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.38 Total: -6.22 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.08 Total: 19.43 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.70 -10.03 -38.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417948760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.113 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds