Wall clock time and date at job start Tue Mar 31 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.99043 * 2 1 4 4 C 1.54103 * 109.88221 * 238.91332 * 2 1 3 5 5 C 1.54813 * 104.18589 * 242.60601 * 4 2 1 6 6 H 1.09005 * 110.93383 * 262.66463 * 5 4 2 7 7 N 1.46902 * 110.90349 * 139.07613 * 5 4 2 8 8 C 1.46904 * 110.99701 * 160.83571 * 7 5 4 9 9 H 1.09002 * 109.46754 * 35.00424 * 8 7 5 10 10 C 1.52999 * 109.46990 * 154.99865 * 8 7 5 11 11 C 1.50695 * 109.47057 * 295.00346 * 10 8 7 12 12 H 1.07999 * 120.00538 * 359.97438 * 11 10 8 13 13 C 1.37881 * 119.99661 * 179.97438 * 11 10 8 14 14 N 1.31520 * 120.00186 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00030 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.50703 * 109.47321 * 275.00198 * 8 7 5 20 20 C 1.38235 * 119.99760 * 319.72537 * 19 8 7 21 21 C 1.38234 * 119.99785 * 179.81055 * 20 19 8 22 22 C 1.38240 * 119.99704 * 0.41988 * 21 20 19 23 23 C 1.38230 * 120.00183 * 359.81421 * 22 21 20 24 24 C 1.38231 * 120.00057 * 359.97438 * 23 22 21 25 25 C 1.54992 * 102.09526 * 20.87912 * 5 4 2 26 26 O 1.43747 * 109.88223 * 121.07969 * 2 1 3 27 27 H 1.09002 * 109.47171 * 300.36914 * 1 2 3 28 28 H 1.08998 * 109.47317 * 60.37559 * 1 2 3 29 29 H 1.09008 * 109.46560 * 180.37438 * 1 2 3 30 30 H 1.08995 * 109.47450 * 179.62903 * 3 2 1 31 31 H 1.09000 * 109.46883 * 299.62736 * 3 2 1 32 32 H 1.09003 * 109.47574 * 59.62839 * 3 2 1 33 33 H 1.08995 * 110.48768 * 123.92423 * 4 2 1 34 34 H 1.09000 * 110.47926 * 1.27898 * 4 2 1 35 35 H 1.00895 * 111.00141 * 284.78926 * 7 5 4 36 36 H 1.09002 * 109.46997 * 174.99908 * 10 8 7 37 37 H 1.09000 * 109.46625 * 55.00333 * 10 8 7 38 38 H 0.97001 * 119.99697 * 359.97438 * 14 13 11 39 39 H 1.08000 * 120.00048 * 0.02562 * 20 19 8 40 40 H 1.08000 * 119.99961 * 180.21051 * 21 20 19 41 41 H 1.08010 * 119.99611 * 179.78897 * 22 21 20 42 42 H 1.07996 * 120.00061 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.00050 * 179.97438 * 24 23 22 44 44 H 1.08996 * 110.62062 * 81.47340 * 25 5 4 45 45 H 1.08998 * 110.61850 * 204.47898 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4378 0.0000 4 6 2.0541 -0.7483 -1.2411 5 6 2.8325 -1.9524 -0.6574 6 1 3.9005 -1.7396 -0.6097 7 7 2.5774 -3.1699 -1.4388 8 6 3.6193 -4.1774 -1.1988 9 1 3.9467 -4.1212 -0.1606 10 6 3.0553 -5.5714 -1.4807 11 6 1.9641 -5.8819 -0.4888 12 1 1.6997 -5.1577 0.2675 13 6 1.3034 -7.0907 -0.5467 14 7 1.6251 -7.9726 -1.4679 15 14 -0.0486 -7.4760 0.6834 16 1 -1.3542 -7.0188 0.1432 17 1 0.2309 -6.7746 1.9621 18 1 -0.0975 -8.9408 0.9227 19 6 4.7907 -3.9157 -2.1099 20 6 4.5749 -3.5314 -3.4201 21 6 5.6495 -3.2875 -4.2548 22 6 6.9398 -3.4364 -3.7817 23 6 7.1556 -3.8253 -2.4730 24 6 6.0811 -4.0650 -1.6370 25 6 2.2281 -2.0713 0.7649 26 8 2.0189 -0.6978 1.1577 27 1 -0.3634 0.5196 0.8867 28 1 -0.3634 0.5080 -0.8933 29 1 -0.3633 -1.0277 0.0067 30 1 3.1429 1.4280 0.0067 31 1 1.6998 1.9529 -0.8933 32 1 1.6890 1.9570 0.8866 33 1 2.7197 -0.1079 -1.8198 34 1 1.2238 -1.0932 -1.8573 35 1 1.6613 -3.5425 -1.2391 36 1 3.8510 -6.3107 -1.3889 37 1 2.6470 -5.6006 -2.4910 38 1 2.3270 -7.7723 -2.1068 39 1 3.5667 -3.4184 -3.7906 40 1 5.4808 -2.9840 -5.2775 41 1 7.7794 -3.2491 -4.4349 42 1 8.1637 -3.9420 -2.1035 43 1 6.2496 -4.3693 -0.6146 44 1 1.2814 -2.6107 0.7358 45 1 2.9296 -2.5611 1.4403 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417948760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:50 Heat of formation + Delta-G solvation = -56.368534 kcal Electronic energy + Delta-G solvation = -23690.947332 eV Core-core repulsion = 20478.491621 eV Total energy + Delta-G solvation = -3212.455711 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.14617 -40.15646 -37.54181 -35.18110 -34.07986 -33.13080 -31.71827 -30.62731 -28.92894 -28.32432 -26.73611 -26.04302 -23.89086 -23.31804 -22.14160 -21.30047 -21.00748 -18.90775 -17.67986 -17.38203 -16.98978 -16.48441 -16.21641 -15.88872 -15.68865 -15.33421 -15.02897 -14.81638 -14.45036 -14.20114 -14.08415 -13.89032 -13.83355 -13.56687 -13.27001 -13.13441 -13.05996 -12.75290 -12.60782 -12.50270 -12.37042 -12.09150 -11.98697 -11.87177 -11.76200 -11.67341 -11.42756 -10.74520 -10.71631 -10.56562 -9.75676 -9.51021 -9.34552 -8.67373 -6.38983 0.51591 0.58361 1.50926 1.58791 1.75206 2.53774 2.69726 2.95756 3.15022 3.39352 3.61769 3.73621 3.91008 3.96766 4.06616 4.08037 4.17422 4.23991 4.27621 4.34478 4.44798 4.58797 4.62723 4.66125 4.71044 4.73225 4.79399 4.80560 4.86063 4.95859 4.97725 5.07252 5.12285 5.20105 5.23886 5.25263 5.31192 5.37779 5.61942 5.66687 5.77126 5.92703 5.95890 6.14978 6.20329 6.25548 6.44194 6.56565 7.42463 8.72483 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.008587 B = 0.007331 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3259.926612 B = 3818.511107 C = 6491.468831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.086 3.914 3 C -0.137 4.137 4 C -0.127 4.127 5 C 0.066 3.934 6 H 0.079 0.921 7 N -0.660 5.660 8 C 0.149 3.851 9 H 0.030 0.970 10 C 0.026 3.974 11 C -0.606 4.606 12 H 0.053 0.947 13 C -0.032 4.032 14 N -0.936 5.936 15 Si 1.113 2.887 16 H -0.271 1.271 17 H -0.271 1.271 18 H -0.286 1.286 19 C -0.083 4.083 20 C -0.104 4.104 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.125 4.125 24 C -0.140 4.140 25 C 0.023 3.977 26 O -0.385 6.385 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.349 0.651 36 H -0.015 1.015 37 H -0.004 1.004 38 H 0.255 0.745 39 H 0.116 0.884 40 H 0.141 0.859 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.114 0.886 44 H 0.054 0.946 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.626 17.066 -1.368 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.047 3.953 3 C -0.194 4.194 4 C -0.165 4.165 5 C -0.045 4.045 6 H 0.098 0.902 7 N -0.293 5.293 8 C 0.040 3.960 9 H 0.048 0.952 10 C -0.012 4.012 11 C -0.644 4.644 12 H 0.071 0.929 13 C -0.230 4.230 14 N -0.573 5.573 15 Si 0.935 3.065 16 H -0.197 1.197 17 H -0.196 1.196 18 H -0.212 1.212 19 C -0.084 4.084 20 C -0.122 4.122 21 C -0.147 4.147 22 C -0.147 4.147 23 C -0.143 4.143 24 C -0.159 4.159 25 C -0.056 4.056 26 O -0.304 6.304 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.170 0.830 36 H 0.003 0.997 37 H 0.015 0.985 38 H 0.065 0.935 39 H 0.134 0.866 40 H 0.159 0.841 41 H 0.167 0.833 42 H 0.161 0.839 43 H 0.132 0.868 44 H 0.072 0.928 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.855 16.267 -1.280 16.767 hybrid contribution 0.828 0.063 0.365 0.907 sum 4.683 16.330 -0.915 17.013 Atomic orbital electron populations 1.22241 0.94155 1.02058 1.03305 1.22393 0.94396 0.93960 0.84540 1.21884 1.01411 0.92736 1.03381 1.22951 1.00665 0.95527 0.97336 1.23049 0.99726 0.91487 0.90251 0.90239 1.60518 1.05964 1.05143 1.57637 1.20156 0.89855 0.91585 0.94436 0.95178 1.19178 0.94537 0.91557 0.95900 1.22287 1.20937 1.04370 1.16788 0.92878 1.27217 1.02392 0.93060 1.00360 1.70878 1.31226 1.37567 1.17635 0.82976 0.73620 0.76144 0.73760 1.19664 1.19631 1.21205 1.20099 0.94048 0.98649 0.95570 1.21049 0.99524 0.98537 0.93101 1.21452 0.92657 1.00301 1.00294 1.21443 0.97444 0.99879 0.95903 1.21345 0.98972 0.99653 0.94297 1.21202 0.92627 1.01639 1.00430 1.24208 0.99658 0.84179 0.97539 1.88847 1.86406 1.20499 1.34672 0.91791 0.89611 0.93584 0.92330 0.89192 0.91829 0.89250 0.89879 0.82971 0.99671 0.98548 0.93511 0.86616 0.84135 0.83335 0.83909 0.86804 0.92804 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 8.61 71.98 0.62 -2.90 16 2 C 0.09 2.10 1.19 -10.42 -0.01 2.09 16 3 C -0.14 -2.62 8.67 71.98 0.62 -1.99 16 4 C -0.13 -3.23 6.02 31.59 0.19 -3.04 16 5 C 0.07 2.06 3.19 46.21 0.15 2.21 16 6 H 0.08 2.59 7.76 -2.38 -0.02 2.57 16 7 N -0.66 -24.12 5.37 -466.65 -2.51 -26.62 16 8 C 0.15 6.14 2.07 44.17 0.09 6.24 16 9 H 0.03 1.29 7.62 -2.39 -0.02 1.27 16 10 C 0.03 1.31 3.86 29.85 0.12 1.42 16 11 C -0.61 -32.87 8.12 25.60 0.21 -32.67 16 12 H 0.05 2.77 7.49 -2.91 -0.02 2.75 16 13 C -0.03 -1.81 5.46 84.65 0.46 -1.34 16 14 N -0.94 -57.46 13.65 21.45 0.29 -57.16 16 15 Si 1.11 49.65 29.90 68.60 2.05 51.70 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 19 C -0.08 -3.06 4.65 -19.87 -0.09 -3.16 16 20 C -0.10 -3.54 9.32 22.27 0.21 -3.33 16 21 C -0.13 -3.56 10.05 22.27 0.22 -3.34 16 22 C -0.13 -3.19 10.05 22.27 0.22 -2.96 16 23 C -0.12 -3.36 10.05 22.27 0.22 -3.13 16 24 C -0.14 -4.66 9.67 22.27 0.22 -4.44 16 25 C 0.02 0.74 7.12 72.66 0.52 1.26 16 26 O -0.39 -11.88 10.86 -148.98 -1.62 -13.50 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.14 8.13 -2.38 -0.02 1.12 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 2.03 7.70 -2.39 -0.02 2.01 16 34 H 0.08 2.14 7.61 -2.39 -0.02 2.12 16 35 H 0.35 14.02 6.79 -89.70 -0.61 13.41 16 36 H -0.01 -0.84 8.01 -2.39 -0.02 -0.86 16 37 H 0.00 -0.21 8.01 -2.39 -0.02 -0.23 16 38 H 0.26 16.03 7.22 -92.71 -0.67 15.36 16 39 H 0.12 4.12 7.73 -2.91 -0.02 4.10 16 40 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 41 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 42 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 43 H 0.11 3.67 8.04 -2.91 -0.02 3.65 16 44 H 0.05 1.85 7.80 -2.39 -0.02 1.83 16 45 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -63.90 362.12 2.62 -61.28 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.44 Total: 33.41 kcal Atomic # 6 Polarization: -53.06 SS G_CDS: 3.97 Total: -49.09 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -2.21 Total: -83.79 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -1.62 Total: -13.50 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.05 Total: 51.70 kcal Total: -63.90 2.62 -61.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417948760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.907 kcal (2) G-P(sol) polarization free energy of solvation -63.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds