Wall clock time and date at job start Tue Mar 31 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.99213 * 2 1 4 4 C 1.54098 * 109.87870 * 121.08549 * 2 1 3 5 5 C 1.54806 * 104.19118 * 117.39356 * 4 2 1 6 6 H 1.08998 * 110.90789 * 97.35492 * 5 4 2 7 7 N 1.46903 * 110.90938 * 220.92232 * 5 4 2 8 8 C 1.46900 * 111.00037 * 205.00158 * 7 5 4 9 9 H 1.09000 * 109.46989 * 324.99730 * 8 7 5 10 10 C 1.53001 * 109.46848 * 204.99943 * 8 7 5 11 11 C 1.50694 * 109.47168 * 64.99770 * 10 8 7 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 10 8 13 13 C 1.37885 * 119.99902 * 179.97438 * 11 10 8 14 14 N 1.31516 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99854 * 179.72538 * 13 11 10 16 16 H 1.48504 * 109.47032 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46816 * 120.00323 * 15 13 11 18 18 H 1.48495 * 109.46630 * 240.00111 * 15 13 11 19 19 C 1.50701 * 109.47449 * 84.99748 * 8 7 5 20 20 C 1.38240 * 119.99660 * 39.72283 * 19 8 7 21 21 C 1.38232 * 119.99659 * 179.80828 * 20 19 8 22 22 C 1.38242 * 120.00027 * 0.40436 * 21 20 19 23 23 C 1.38229 * 119.99893 * 359.85262 * 22 21 20 24 24 C 1.38227 * 120.00009 * 220.00030 * 19 8 7 25 25 C 1.54991 * 102.09053 * 339.11804 * 5 4 2 26 26 O 1.43747 * 109.88019 * 238.91335 * 2 1 3 27 27 H 1.08995 * 109.46836 * 298.92061 * 1 2 3 28 28 H 1.09005 * 109.46892 * 58.91939 * 1 2 3 29 29 H 1.08996 * 109.46949 * 178.91508 * 1 2 3 30 30 H 1.09000 * 109.47127 * 181.08680 * 3 2 1 31 31 H 1.08999 * 109.46730 * 301.08138 * 3 2 1 32 32 H 1.08996 * 109.47258 * 61.08116 * 3 2 1 33 33 H 1.09000 * 110.48941 * 358.71482 * 4 2 1 34 34 H 1.09007 * 110.48904 * 236.07276 * 4 2 1 35 35 H 1.00898 * 110.99573 * 328.95259 * 7 5 4 36 36 H 1.08998 * 109.46837 * 304.99792 * 10 8 7 37 37 H 1.09002 * 109.46926 * 184.99595 * 10 8 7 38 38 H 0.97001 * 119.99646 * 180.02562 * 14 13 11 39 39 H 1.08002 * 119.99993 * 0.02562 * 20 19 8 40 40 H 1.07998 * 119.99834 * 180.23490 * 21 20 19 41 41 H 1.07999 * 119.99892 * 179.83070 * 22 21 20 42 42 H 1.08004 * 120.00042 * 179.97438 * 23 22 21 43 43 H 1.08005 * 120.00295 * 359.97438 * 24 19 8 44 44 H 1.09001 * 110.61657 * 155.52305 * 25 5 4 45 45 H 1.09001 * 110.62114 * 278.52196 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 6 2.0540 -0.7482 1.2411 5 6 2.8324 -1.9524 0.6576 6 1 3.9003 -1.7394 0.6105 7 7 2.5773 -3.1699 1.4391 8 6 3.6880 -4.1223 1.3075 9 1 4.0989 -4.0642 0.2996 10 6 3.1772 -5.5407 1.5690 11 6 2.1923 -5.9258 0.4955 12 1 1.9541 -5.2287 -0.2942 13 6 1.5953 -7.1684 0.5213 14 7 1.8850 -8.0173 1.4832 15 14 0.3686 -7.6430 -0.8052 16 1 0.2133 -6.5174 -1.7613 17 1 0.8616 -8.8423 -1.5289 18 1 -0.9436 -7.9467 -0.1799 19 6 4.7623 -3.7827 2.3083 20 6 4.4156 -3.3797 3.5844 21 6 5.4011 -3.0720 4.5036 22 6 6.7332 -3.1593 4.1442 23 6 7.0796 -3.5572 2.8665 24 6 6.0942 -3.8688 1.9485 25 6 2.2280 -2.0714 -0.7646 26 8 2.0188 -0.6980 -1.1577 27 1 -0.3633 0.4970 0.8995 28 1 -0.3633 0.5306 -0.8802 29 1 -0.3633 -1.0275 -0.0195 30 1 3.1429 1.4280 -0.0195 31 1 1.6787 1.9606 -0.8801 32 1 1.7104 1.9492 0.8995 33 1 1.2238 -1.0931 1.8574 34 1 2.7197 -0.1078 1.8198 35 1 2.4043 -2.9480 2.4080 36 1 2.6868 -5.5766 2.5418 37 1 4.0162 -6.2365 1.5591 38 1 1.4652 -8.8916 1.5012 39 1 3.3749 -3.3086 3.8642 40 1 5.1304 -2.7608 5.5017 41 1 7.5030 -2.9163 4.8615 42 1 8.1203 -3.6250 2.5856 43 1 6.3649 -4.1797 0.9502 44 1 2.9295 -2.5613 -1.4400 45 1 1.2813 -2.6108 -0.7355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417948761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:53 Heat of formation + Delta-G solvation = -30.167286 kcal Electronic energy + Delta-G solvation = -23639.078362 eV Core-core repulsion = 20427.758823 eV Total energy + Delta-G solvation = -3211.319539 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.89597 -39.02803 -35.92560 -32.98139 -32.90111 -31.64992 -30.64792 -29.11893 -27.66914 -27.38048 -25.61132 -24.40827 -22.40880 -21.89940 -20.60614 -20.11941 -19.50452 -16.98494 -16.12247 -16.04690 -15.62985 -14.99699 -14.87256 -14.54126 -14.46538 -14.23145 -13.70046 -13.33830 -13.18432 -13.02099 -12.74803 -12.58306 -12.40154 -12.16396 -12.06473 -11.85293 -11.57850 -11.26719 -11.06209 -10.92937 -10.89717 -10.80618 -10.62598 -10.46643 -10.38330 -10.09816 -9.66487 -9.40289 -9.02994 -8.65827 -8.29478 -8.24834 -7.80142 -5.90465 -3.88905 1.66334 1.67301 3.37124 3.44938 3.49586 3.98567 4.08603 4.54692 4.62030 4.74007 4.85718 4.99584 5.12232 5.16024 5.19597 5.25779 5.40348 5.45100 5.48136 5.50191 5.58654 5.72478 5.77856 5.80691 5.84431 5.90274 5.93623 5.94144 6.05121 6.14955 6.18607 6.28738 6.30055 6.35987 6.39254 6.72283 6.73702 6.78881 6.93936 7.16127 7.29178 7.49247 7.62924 7.92258 7.96514 8.10334 8.52994 9.16102 9.72673 11.21335 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.008737 B = 0.007149 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.051686 B = 3915.592128 C = 6531.936332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 C -0.142 4.142 4 C -0.149 4.149 5 C 0.057 3.943 6 H 0.054 0.946 7 N -0.647 5.647 8 C 0.128 3.872 9 H 0.075 0.925 10 C 0.042 3.958 11 C -0.489 4.489 12 H 0.060 0.940 13 C 0.052 3.948 14 N -0.901 5.901 15 Si 0.888 3.112 16 H -0.273 1.273 17 H -0.288 1.288 18 H -0.287 1.287 19 C -0.091 4.091 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.137 4.137 23 C -0.121 4.121 24 C -0.117 4.117 25 C 0.058 3.942 26 O -0.376 6.376 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.336 0.664 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.257 0.743 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.088 0.912 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.468 15.889 2.499 16.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.061 3.939 3 C -0.199 4.199 4 C -0.187 4.187 5 C -0.054 4.054 6 H 0.072 0.928 7 N -0.279 5.279 8 C 0.019 3.981 9 H 0.093 0.907 10 C 0.005 3.995 11 C -0.528 4.528 12 H 0.079 0.921 13 C -0.148 4.148 14 N -0.542 5.542 15 Si 0.717 3.283 16 H -0.197 1.197 17 H -0.214 1.214 18 H -0.213 1.213 19 C -0.093 4.093 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.155 4.155 23 C -0.139 4.139 24 C -0.135 4.135 25 C -0.019 4.019 26 O -0.295 6.295 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.157 0.843 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.067 0.933 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.106 0.894 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.048 15.529 1.847 16.154 hybrid contribution 0.010 -0.197 0.199 0.280 sum 4.058 15.332 2.046 15.992 Atomic orbital electron populations 1.22242 0.94994 1.02919 1.01809 1.21965 0.93612 0.92731 0.85617 1.21893 1.01533 0.94474 1.01987 1.23199 1.00721 0.96941 0.97876 1.23027 0.97659 0.89647 0.95068 0.92825 1.60678 1.42030 1.10455 1.14759 1.21052 0.85952 0.95890 0.95221 0.90691 1.19090 0.95988 0.86700 0.97736 1.21130 1.23166 0.98731 1.09739 0.92142 1.24995 0.97120 0.96808 0.95882 1.69979 1.44138 1.07488 1.32610 0.86590 0.81328 0.78280 0.82103 1.19744 1.21400 1.21300 1.21163 0.95998 0.95915 0.96214 1.20949 0.99303 1.00184 0.93357 1.21052 0.93086 1.00529 0.99041 1.21014 0.96091 1.01895 0.96487 1.21088 0.98953 0.99932 0.93891 1.21091 0.92520 1.00198 0.99738 1.23594 1.01184 0.82511 0.94603 1.88858 1.86040 1.21623 1.32958 0.91971 0.92286 0.91671 0.92130 0.92152 0.91631 0.89733 0.90982 0.84344 0.96265 0.96257 0.93340 0.86252 0.86612 0.86778 0.86630 0.86256 0.89402 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 8.61 37.16 0.32 -1.61 16 2 C 0.10 1.30 1.19 -90.04 -0.11 1.19 16 3 C -0.14 -1.51 8.67 37.16 0.32 -1.19 16 4 C -0.15 -1.92 5.78 -25.21 -0.15 -2.07 16 5 C 0.06 0.87 3.21 -65.71 -0.21 0.66 16 6 H 0.05 0.85 7.71 -51.93 -0.40 0.45 16 7 N -0.65 -11.36 5.81 -98.86 -0.57 -11.94 16 8 C 0.13 2.49 2.04 -68.86 -0.14 2.35 16 9 H 0.07 1.49 7.72 -51.93 -0.40 1.09 16 10 C 0.04 1.04 4.63 -27.89 -0.13 0.91 16 11 C -0.49 -13.30 8.84 -34.44 -0.30 -13.61 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 13 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 14 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 15 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 C -0.09 -1.57 4.67 -104.62 -0.49 -2.06 16 20 C -0.12 -1.88 9.12 -39.58 -0.36 -2.24 16 21 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16 22 C -0.14 -1.81 10.05 -39.58 -0.40 -2.21 16 23 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 24 C -0.12 -1.86 9.67 -39.58 -0.38 -2.24 16 25 C 0.06 0.95 7.35 38.21 0.28 1.23 16 26 O -0.38 -5.93 10.86 -35.23 -0.38 -6.31 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.08 7.49 -51.93 -0.39 0.69 16 34 H 0.07 0.83 7.70 -51.93 -0.40 0.43 16 35 H 0.34 5.50 5.94 -39.29 -0.23 5.27 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.12 1.80 6.50 -52.49 -0.34 1.46 16 40 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 41 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 43 H 0.12 1.79 8.04 -52.48 -0.42 1.37 16 44 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -30.11 362.88 -10.03 -40.14 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.62 Total: 5.69 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -2.64 Total: -23.63 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.16 Total: -38.15 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.38 Total: -6.31 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.11 -10.03 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417948761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.972 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds