Wall clock time and date at job start Tue Mar 31 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.99213 * 2 1 4 4 C 1.54098 * 109.87870 * 121.08549 * 2 1 3 5 5 C 1.54806 * 104.19118 * 117.39356 * 4 2 1 6 6 H 1.08998 * 110.90789 * 97.35492 * 5 4 2 7 7 N 1.46903 * 110.90938 * 220.92232 * 5 4 2 8 8 C 1.46900 * 111.00037 * 205.00158 * 7 5 4 9 9 H 1.09000 * 109.46989 * 324.99730 * 8 7 5 10 10 C 1.53001 * 109.46848 * 204.99943 * 8 7 5 11 11 C 1.50694 * 109.47168 * 64.99770 * 10 8 7 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 10 8 13 13 C 1.37885 * 119.99902 * 179.97438 * 11 10 8 14 14 N 1.31516 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99854 * 179.72538 * 13 11 10 16 16 H 1.48504 * 109.47032 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46816 * 120.00323 * 15 13 11 18 18 H 1.48495 * 109.46630 * 240.00111 * 15 13 11 19 19 C 1.50701 * 109.47449 * 84.99748 * 8 7 5 20 20 C 1.38240 * 119.99660 * 39.72283 * 19 8 7 21 21 C 1.38232 * 119.99659 * 179.80828 * 20 19 8 22 22 C 1.38242 * 120.00027 * 0.40436 * 21 20 19 23 23 C 1.38229 * 119.99893 * 359.85262 * 22 21 20 24 24 C 1.38227 * 120.00009 * 220.00030 * 19 8 7 25 25 C 1.54991 * 102.09053 * 339.11804 * 5 4 2 26 26 O 1.43747 * 109.88019 * 238.91335 * 2 1 3 27 27 H 1.08995 * 109.46836 * 298.92061 * 1 2 3 28 28 H 1.09005 * 109.46892 * 58.91939 * 1 2 3 29 29 H 1.08996 * 109.46949 * 178.91508 * 1 2 3 30 30 H 1.09000 * 109.47127 * 181.08680 * 3 2 1 31 31 H 1.08999 * 109.46730 * 301.08138 * 3 2 1 32 32 H 1.08996 * 109.47258 * 61.08116 * 3 2 1 33 33 H 1.09000 * 110.48941 * 358.71482 * 4 2 1 34 34 H 1.09007 * 110.48904 * 236.07276 * 4 2 1 35 35 H 1.00898 * 110.99573 * 328.95259 * 7 5 4 36 36 H 1.08998 * 109.46837 * 304.99792 * 10 8 7 37 37 H 1.09002 * 109.46926 * 184.99595 * 10 8 7 38 38 H 0.97001 * 119.99646 * 180.02562 * 14 13 11 39 39 H 1.08002 * 119.99993 * 0.02562 * 20 19 8 40 40 H 1.07998 * 119.99834 * 180.23490 * 21 20 19 41 41 H 1.07999 * 119.99892 * 179.83070 * 22 21 20 42 42 H 1.08004 * 120.00042 * 179.97438 * 23 22 21 43 43 H 1.08005 * 120.00295 * 359.97438 * 24 19 8 44 44 H 1.09001 * 110.61657 * 155.52305 * 25 5 4 45 45 H 1.09001 * 110.62114 * 278.52196 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 6 2.0540 -0.7482 1.2411 5 6 2.8324 -1.9524 0.6576 6 1 3.9003 -1.7394 0.6105 7 7 2.5773 -3.1699 1.4391 8 6 3.6880 -4.1223 1.3075 9 1 4.0989 -4.0642 0.2996 10 6 3.1772 -5.5407 1.5690 11 6 2.1923 -5.9258 0.4955 12 1 1.9541 -5.2287 -0.2942 13 6 1.5953 -7.1684 0.5213 14 7 1.8850 -8.0173 1.4832 15 14 0.3686 -7.6430 -0.8052 16 1 0.2133 -6.5174 -1.7613 17 1 0.8616 -8.8423 -1.5289 18 1 -0.9436 -7.9467 -0.1799 19 6 4.7623 -3.7827 2.3083 20 6 4.4156 -3.3797 3.5844 21 6 5.4011 -3.0720 4.5036 22 6 6.7332 -3.1593 4.1442 23 6 7.0796 -3.5572 2.8665 24 6 6.0942 -3.8688 1.9485 25 6 2.2280 -2.0714 -0.7646 26 8 2.0188 -0.6980 -1.1577 27 1 -0.3633 0.4970 0.8995 28 1 -0.3633 0.5306 -0.8802 29 1 -0.3633 -1.0275 -0.0195 30 1 3.1429 1.4280 -0.0195 31 1 1.6787 1.9606 -0.8801 32 1 1.7104 1.9492 0.8995 33 1 1.2238 -1.0931 1.8574 34 1 2.7197 -0.1078 1.8198 35 1 2.4043 -2.9480 2.4080 36 1 2.6868 -5.5766 2.5418 37 1 4.0162 -6.2365 1.5591 38 1 1.4652 -8.8916 1.5012 39 1 3.3749 -3.3086 3.8642 40 1 5.1304 -2.7608 5.5017 41 1 7.5030 -2.9163 4.8615 42 1 8.1203 -3.6250 2.5856 43 1 6.3649 -4.1797 0.9502 44 1 2.9295 -2.5613 -1.4400 45 1 1.2813 -2.6108 -0.7355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417948761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:52 Heat of formation + Delta-G solvation = -47.274643 kcal Electronic energy + Delta-G solvation = -23639.820193 eV Core-core repulsion = 20427.758823 eV Total energy + Delta-G solvation = -3212.061370 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.10179 -40.20793 -37.31831 -34.89502 -34.04189 -33.09048 -31.78233 -30.60503 -29.24682 -28.29059 -26.75962 -26.18008 -23.76219 -23.30940 -21.89361 -21.35274 -20.77417 -18.60575 -17.73996 -17.31668 -16.90020 -16.47617 -16.15890 -16.06398 -15.72304 -15.40741 -15.00930 -14.55654 -14.37269 -14.29682 -14.16588 -13.93459 -13.76885 -13.55739 -13.17536 -13.02144 -12.84999 -12.72991 -12.54018 -12.41167 -12.33856 -12.16522 -12.04451 -11.90294 -11.79073 -11.45937 -11.34183 -11.09877 -10.62476 -10.49954 -9.79731 -9.53674 -9.20701 -8.10090 -6.15032 0.49710 0.52671 1.40352 1.41878 1.54278 2.46494 2.81071 2.92969 3.22925 3.38656 3.56877 3.82978 3.92510 3.95358 4.01557 4.17261 4.19733 4.29755 4.30923 4.34757 4.48485 4.67615 4.71364 4.72041 4.75344 4.77490 4.82493 4.90351 4.96880 4.99098 5.04201 5.09383 5.15553 5.18317 5.27116 5.40481 5.48456 5.58802 5.61283 5.63149 5.70448 5.88738 6.02235 6.15958 6.28653 6.42166 6.60796 6.98513 7.50633 9.02097 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.008737 B = 0.007149 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.051686 B = 3915.592128 C = 6531.936332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.090 3.910 3 C -0.137 4.137 4 C -0.140 4.140 5 C 0.063 3.937 6 H 0.051 0.949 7 N -0.658 5.658 8 C 0.146 3.854 9 H 0.063 0.937 10 C 0.053 3.947 11 C -0.495 4.495 12 H 0.060 0.940 13 C -0.003 4.003 14 N -0.939 5.939 15 Si 0.953 3.047 16 H -0.265 1.265 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.115 4.115 20 C -0.132 4.132 21 C -0.119 4.119 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.135 4.135 25 C 0.060 3.940 26 O -0.389 6.389 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.342 0.658 36 H -0.007 1.007 37 H -0.013 1.013 38 H 0.258 0.742 39 H 0.119 0.881 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.117 0.883 44 H 0.080 0.920 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.996 18.069 3.338 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 C -0.194 4.194 4 C -0.178 4.178 5 C -0.048 4.048 6 H 0.069 0.931 7 N -0.291 5.291 8 C 0.036 3.964 9 H 0.081 0.919 10 C 0.016 3.984 11 C -0.533 4.533 12 H 0.078 0.922 13 C -0.199 4.199 14 N -0.581 5.581 15 Si 0.780 3.220 16 H -0.189 1.189 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.117 4.117 20 C -0.150 4.150 21 C -0.137 4.137 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.154 4.154 25 C -0.017 4.017 26 O -0.308 6.308 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.164 0.836 36 H 0.011 0.989 37 H 0.005 0.995 38 H 0.067 0.933 39 H 0.137 0.863 40 H 0.162 0.838 41 H 0.167 0.833 42 H 0.161 0.839 43 H 0.135 0.865 44 H 0.098 0.902 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.576 17.731 2.682 18.507 hybrid contribution -0.105 -0.844 -0.020 0.850 sum 4.471 16.887 2.662 17.671 Atomic orbital electron populations 1.22234 0.94282 1.02014 1.03203 1.22276 0.94312 0.93782 0.84506 1.21894 1.01381 0.92776 1.03395 1.23177 1.00736 0.95888 0.98026 1.22930 0.97826 0.89681 0.94316 0.93065 1.60506 1.41635 1.11433 1.15525 1.20505 0.87071 0.93362 0.95443 0.91894 1.18858 0.94140 0.89772 0.95664 1.21463 1.23172 0.98684 1.10026 0.92216 1.25820 0.99092 0.96974 0.98052 1.70107 1.45554 1.07924 1.34539 0.85566 0.78897 0.78076 0.79499 1.18942 1.20895 1.20910 1.20945 0.95829 0.98399 0.96501 1.21063 1.00050 1.00694 0.93236 1.21407 0.93005 0.99492 0.99791 1.21467 0.96685 1.00017 0.96683 1.21424 0.99792 0.98852 0.93815 1.21240 0.92633 1.00969 1.00518 1.23432 0.99950 0.83059 0.95281 1.88845 1.86348 1.21044 1.34585 0.89650 0.91882 0.93661 0.92327 0.91860 0.89188 0.89519 0.88994 0.83633 0.98904 0.99484 0.93299 0.86325 0.83771 0.83301 0.83904 0.86465 0.90217 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 8.61 71.98 0.62 -2.96 16 2 C 0.09 2.20 1.19 -10.42 -0.01 2.19 16 3 C -0.14 -2.57 8.67 71.98 0.62 -1.95 16 4 C -0.14 -3.41 5.78 31.58 0.18 -3.23 16 5 C 0.06 1.95 3.21 46.21 0.15 2.09 16 6 H 0.05 1.62 7.71 -2.39 -0.02 1.60 16 7 N -0.66 -23.74 5.81 -466.68 -2.71 -26.46 16 8 C 0.15 5.91 2.04 44.17 0.09 6.00 16 9 H 0.06 2.64 7.72 -2.39 -0.02 2.62 16 10 C 0.05 2.77 4.63 29.85 0.14 2.91 16 11 C -0.50 -27.92 8.84 25.60 0.23 -27.69 16 12 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 13 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 14 N -0.94 -57.86 13.29 21.45 0.28 -57.58 16 15 Si 0.95 45.67 29.54 68.60 2.03 47.70 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 18 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 19 C -0.11 -4.02 4.67 -19.87 -0.09 -4.12 16 20 C -0.13 -4.09 9.12 22.27 0.20 -3.89 16 21 C -0.12 -3.00 10.05 22.27 0.22 -2.77 16 22 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 23 C -0.12 -3.09 10.05 22.27 0.22 -2.87 16 24 C -0.13 -4.28 9.67 22.27 0.22 -4.07 16 25 C 0.06 2.03 7.35 72.66 0.53 2.56 16 26 O -0.39 -12.17 10.86 -148.98 -1.62 -13.79 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.04 1.18 8.11 -2.39 -0.02 1.16 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 2.08 7.49 -2.39 -0.02 2.06 16 34 H 0.09 1.88 7.70 -2.38 -0.02 1.86 16 35 H 0.34 11.40 5.94 -89.70 -0.53 10.86 16 36 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.12 3.58 6.50 -2.91 -0.02 3.56 16 40 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 41 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 42 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 43 H 0.12 3.62 8.04 -2.91 -0.02 3.60 16 44 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 45 H 0.06 2.07 8.11 -2.39 -0.02 2.05 16 Total: -1.00 -66.92 362.88 2.41 -64.51 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.41 Total: 25.93 kcal Atomic # 6 Polarization: -44.33 SS G_CDS: 4.01 Total: -40.31 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -2.43 Total: -84.03 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.62 Total: -13.79 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -66.92 2.41 -64.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417948761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.237 kcal (2) G-P(sol) polarization free energy of solvation -66.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds