Wall clock time and date at job start Tue Mar 31 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.89169 * 2 1 4 4 C 1.54387 * 109.82986 * 120.92934 * 2 1 3 5 5 C 1.55299 * 102.24999 * 98.15795 * 4 2 1 6 6 H 1.08998 * 111.13109 * 276.16898 * 5 4 2 7 7 N 1.46903 * 111.12163 * 152.05263 * 5 4 2 8 8 C 1.46899 * 110.99898 * 154.90481 * 7 5 4 9 9 H 1.09004 * 109.47509 * 31.91927 * 8 7 5 10 10 C 1.53002 * 109.46982 * 271.91795 * 8 7 5 11 11 C 1.50697 * 109.47224 * 174.29063 * 10 8 7 12 12 H 1.08004 * 120.00144 * 358.72091 * 11 10 8 13 13 C 1.37882 * 120.00137 * 178.72038 * 11 10 8 14 14 N 1.31506 * 119.99669 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00166 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47199 * 89.99911 * 15 13 11 17 17 H 1.48496 * 109.47277 * 210.00233 * 15 13 11 18 18 H 1.48505 * 109.47156 * 330.00286 * 15 13 11 19 19 C 1.50698 * 109.47398 * 151.92151 * 8 7 5 20 20 C 1.38236 * 120.00302 * 219.99648 * 19 8 7 21 21 C 1.38231 * 120.00178 * 179.97438 * 20 19 8 22 22 C 1.38236 * 120.00050 * 0.02562 * 21 20 19 23 23 C 1.38236 * 120.00113 * 0.06237 * 22 21 20 24 24 C 1.38239 * 119.99849 * 359.89421 * 23 22 21 25 25 C 1.54942 * 100.94293 * 34.13349 * 5 4 2 26 26 O 1.43228 * 109.83216 * 239.06418 * 2 1 3 27 27 H 1.08999 * 109.47028 * 299.06804 * 1 2 3 28 28 H 1.08994 * 109.46885 * 59.07369 * 1 2 3 29 29 H 1.09004 * 109.46506 * 179.06912 * 1 2 3 30 30 H 1.09002 * 109.47102 * 180.93290 * 3 2 1 31 31 H 1.09005 * 109.47429 * 300.92912 * 3 2 1 32 32 H 1.08998 * 109.47920 * 60.93345 * 3 2 1 33 33 H 1.09000 * 110.84677 * 339.96897 * 4 2 1 34 34 H 1.09000 * 110.84546 * 216.34816 * 4 2 1 35 35 H 1.00898 * 111.00193 * 30.94467 * 7 5 4 36 36 H 1.08999 * 109.47478 * 294.29426 * 10 8 7 37 37 H 1.09000 * 109.47101 * 54.29369 * 10 8 7 38 38 H 0.97006 * 120.00074 * 180.02562 * 14 13 11 39 39 H 1.07996 * 119.99579 * 359.97438 * 20 19 8 40 40 H 1.08000 * 119.99952 * 179.72195 * 21 20 19 41 41 H 1.08000 * 120.00000 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.00100 * 179.97438 * 23 22 21 43 43 H 1.07996 * 119.99931 * 180.11114 * 24 23 22 44 44 H 1.09001 * 110.31146 * 82.46935 * 25 5 4 45 45 H 1.09001 * 110.30983 * 204.63373 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0506 1.4387 0.0000 4 6 2.0538 -0.7465 1.2458 5 6 2.3682 -2.1569 0.6769 6 1 1.4733 -2.7787 0.6515 7 7 3.4404 -2.8089 1.4407 8 6 3.3481 -4.2711 1.3345 9 1 2.9422 -4.5398 0.3592 10 6 2.4284 -4.8053 2.4344 11 6 2.2216 -6.2855 2.2414 12 1 2.6817 -6.7905 1.4049 13 6 1.4450 -6.9951 3.1328 14 7 0.8844 -6.3801 4.1510 15 14 1.1882 -8.8297 2.8932 16 1 2.2533 -9.5764 3.6096 17 1 -0.1388 -9.2186 3.4346 18 1 1.2458 -9.1527 1.4448 19 6 4.7205 -4.8738 1.4907 20 6 5.1013 -5.9404 0.6981 21 6 6.3604 -6.4928 0.8411 22 6 7.2384 -5.9790 1.7770 23 6 6.8570 -4.9136 2.5709 24 6 5.5982 -4.3605 2.4273 25 6 2.8408 -1.7981 -0.7544 26 8 2.0160 -0.6926 -1.1557 27 1 -0.3633 0.4993 0.8982 28 1 -0.3633 0.5281 -0.8815 29 1 -0.3632 -1.0276 -0.0167 30 1 3.1405 1.4307 -0.0167 31 1 1.6776 1.9601 -0.8816 32 1 1.7049 1.9503 0.8982 33 1 1.2851 -0.8016 2.0166 34 1 2.9572 -0.2731 1.6304 35 1 3.4272 -2.5148 2.4058 36 1 2.8842 -4.6260 3.4081 37 1 1.4668 -4.2945 2.3838 38 1 0.3384 -6.8793 4.7784 39 1 4.4152 -6.3420 -0.0328 40 1 6.6563 -7.3290 0.2249 41 1 8.2220 -6.4109 1.8890 42 1 7.5428 -4.5124 3.3024 43 1 5.3008 -3.5270 3.0463 44 1 3.8900 -1.5029 -0.7435 45 1 2.6921 -2.6443 -1.4252 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417948762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:56 Heat of formation + Delta-G solvation = -35.506690 kcal Electronic energy + Delta-G solvation = -23467.035118 eV Core-core repulsion = 20255.484044 eV Total energy + Delta-G solvation = -3211.551073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.86377 -38.76568 -35.99750 -33.09248 -33.05997 -31.65262 -30.30613 -28.95562 -27.82109 -27.35191 -25.66556 -24.20541 -22.25360 -21.93723 -20.77193 -20.11053 -19.37692 -16.73967 -16.39993 -16.05418 -15.63243 -14.96747 -14.71813 -14.60848 -14.34343 -13.95692 -13.64556 -13.33223 -13.17047 -12.96123 -12.72922 -12.55405 -12.37501 -12.22864 -12.07326 -11.65107 -11.57707 -11.43830 -11.10975 -11.04707 -10.92236 -10.82732 -10.65316 -10.50842 -10.24932 -10.00240 -9.88664 -9.39776 -9.24380 -8.44128 -8.28138 -8.14196 -7.74667 -6.07116 -4.09033 2.03625 2.04676 3.28520 3.35010 3.37549 3.85513 4.36435 4.42314 4.53093 4.66605 4.92108 4.92701 5.17108 5.29689 5.38436 5.43176 5.46655 5.46941 5.57325 5.60543 5.70681 5.71248 5.78728 5.85505 5.91652 5.94053 6.03175 6.08150 6.12773 6.15656 6.19571 6.23547 6.32594 6.51018 6.64570 6.69516 7.02236 7.06435 7.15700 7.29020 7.34244 7.46803 7.64997 7.66391 7.81900 7.91415 8.31313 8.95403 9.55412 11.04051 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.005286 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.547690 B = 5295.887200 C = 6870.300556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.104 3.896 3 C -0.152 4.152 4 C -0.149 4.149 5 C 0.057 3.943 6 H 0.069 0.931 7 N -0.675 5.675 8 C 0.119 3.881 9 H 0.074 0.926 10 C 0.007 3.993 11 C -0.513 4.513 12 H 0.059 0.941 13 C 0.060 3.940 14 N -0.895 5.895 15 Si 0.889 3.111 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.022 4.022 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.140 4.140 23 C -0.127 4.127 24 C -0.102 4.102 25 C 0.062 3.938 26 O -0.378 6.378 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.342 0.658 36 H 0.022 0.978 37 H 0.017 0.983 38 H 0.260 0.740 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.067 0.933 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 10.566 -5.898 13.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.064 3.936 3 C -0.209 4.209 4 C -0.187 4.187 5 C -0.054 4.054 6 H 0.087 0.913 7 N -0.305 5.305 8 C 0.011 3.989 9 H 0.092 0.908 10 C -0.031 4.031 11 C -0.552 4.552 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.535 5.535 15 Si 0.717 3.283 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.022 4.022 20 C -0.127 4.127 21 C -0.143 4.143 22 C -0.158 4.158 23 C -0.145 4.145 24 C -0.121 4.121 25 C -0.015 4.015 26 O -0.297 6.297 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.161 0.839 36 H 0.040 0.960 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.086 0.914 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.685 10.672 -6.472 13.715 hybrid contribution -0.945 -1.485 0.912 1.982 sum 4.740 9.187 -5.560 11.738 Atomic orbital electron populations 1.22088 0.94222 1.02785 1.01965 1.21949 0.93970 0.92310 0.85378 1.22084 1.01560 0.95289 1.01986 1.23365 1.02171 0.95474 0.97731 1.23119 0.93963 0.94169 0.94116 0.91285 1.60629 1.45559 1.07583 1.16776 1.20828 0.92353 0.84576 1.01169 0.90793 1.19684 0.93515 0.96878 0.92984 1.21095 1.30070 0.93121 1.10864 0.92293 1.24969 0.95697 0.98296 0.95195 1.69947 1.33224 1.35954 1.14340 0.86634 0.77455 0.85762 0.78464 1.20614 1.21285 1.19805 1.19679 0.94498 0.94202 0.93845 1.20939 0.95582 0.96321 0.99813 1.20966 0.94389 0.99881 0.99113 1.20907 0.99296 0.97979 0.97651 1.20984 0.96668 0.97251 0.99615 1.20802 0.93429 0.99706 0.98147 1.23365 0.94731 0.88496 0.94924 1.88402 1.67590 1.43874 1.29862 0.91673 0.92171 0.91910 0.92173 0.92197 0.91736 0.90035 0.89805 0.83918 0.95987 0.96527 0.93009 0.86651 0.87051 0.87258 0.87123 0.86796 0.91430 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.73 37.16 0.32 -1.44 16 2 C 0.10 1.29 1.27 -89.89 -0.11 1.18 16 3 C -0.15 -1.59 8.75 37.16 0.32 -1.27 16 4 C -0.15 -1.91 5.50 -24.79 -0.14 -2.05 16 5 C 0.06 0.86 3.17 -65.47 -0.21 0.66 16 6 H 0.07 1.19 7.49 -51.93 -0.39 0.80 16 7 N -0.67 -10.97 5.58 -98.61 -0.55 -11.52 16 8 C 0.12 2.31 2.07 -68.87 -0.14 2.17 16 9 H 0.07 1.47 7.67 -51.93 -0.40 1.08 16 10 C 0.01 0.18 4.39 -27.88 -0.12 0.06 16 11 C -0.51 -13.74 8.58 -34.44 -0.30 -14.03 16 12 H 0.06 1.54 6.62 -52.48 -0.35 1.20 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 14 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 15 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 C -0.02 -0.41 4.49 -104.62 -0.47 -0.88 16 20 C -0.11 -1.99 8.75 -39.58 -0.35 -2.33 16 21 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 22 C -0.14 -2.19 10.05 -39.58 -0.40 -2.59 16 23 C -0.13 -2.05 10.05 -39.58 -0.40 -2.44 16 24 C -0.10 -1.82 9.32 -39.58 -0.37 -2.19 16 25 C 0.06 0.91 7.48 38.18 0.29 1.20 16 26 O -0.38 -5.61 10.68 -35.23 -0.38 -5.99 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.01 7.82 -51.93 -0.41 0.61 16 34 H 0.08 1.01 7.85 -51.93 -0.41 0.60 16 35 H 0.34 5.48 7.65 -39.29 -0.30 5.18 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.43 7.75 -51.93 -0.40 0.02 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.12 2.06 7.83 -52.49 -0.41 1.65 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 42 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.11 1.90 7.35 -52.49 -0.39 1.51 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -29.24 362.27 -9.97 -39.20 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.66 Total: 6.70 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -2.56 Total: -24.86 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.19 Total: -36.94 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.38 Total: -5.99 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.24 -9.97 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417948762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.695 kcal (2) G-P(sol) polarization free energy of solvation -29.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds