Wall clock time and date at job start Tue Mar 31 2020 05:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.89169 * 2 1 4 4 C 1.54387 * 109.82986 * 120.92934 * 2 1 3 5 5 C 1.55299 * 102.24999 * 98.15795 * 4 2 1 6 6 H 1.08998 * 111.13109 * 276.16898 * 5 4 2 7 7 N 1.46903 * 111.12163 * 152.05263 * 5 4 2 8 8 C 1.46899 * 110.99898 * 154.90481 * 7 5 4 9 9 H 1.09004 * 109.47509 * 31.91927 * 8 7 5 10 10 C 1.53002 * 109.46982 * 271.91795 * 8 7 5 11 11 C 1.50697 * 109.47224 * 174.29063 * 10 8 7 12 12 H 1.08004 * 120.00144 * 358.72091 * 11 10 8 13 13 C 1.37882 * 120.00137 * 178.72038 * 11 10 8 14 14 N 1.31506 * 119.99669 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00166 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47199 * 89.99911 * 15 13 11 17 17 H 1.48496 * 109.47277 * 210.00233 * 15 13 11 18 18 H 1.48505 * 109.47156 * 330.00286 * 15 13 11 19 19 C 1.50698 * 109.47398 * 151.92151 * 8 7 5 20 20 C 1.38236 * 120.00302 * 219.99648 * 19 8 7 21 21 C 1.38231 * 120.00178 * 179.97438 * 20 19 8 22 22 C 1.38236 * 120.00050 * 0.02562 * 21 20 19 23 23 C 1.38236 * 120.00113 * 0.06237 * 22 21 20 24 24 C 1.38239 * 119.99849 * 359.89421 * 23 22 21 25 25 C 1.54942 * 100.94293 * 34.13349 * 5 4 2 26 26 O 1.43228 * 109.83216 * 239.06418 * 2 1 3 27 27 H 1.08999 * 109.47028 * 299.06804 * 1 2 3 28 28 H 1.08994 * 109.46885 * 59.07369 * 1 2 3 29 29 H 1.09004 * 109.46506 * 179.06912 * 1 2 3 30 30 H 1.09002 * 109.47102 * 180.93290 * 3 2 1 31 31 H 1.09005 * 109.47429 * 300.92912 * 3 2 1 32 32 H 1.08998 * 109.47920 * 60.93345 * 3 2 1 33 33 H 1.09000 * 110.84677 * 339.96897 * 4 2 1 34 34 H 1.09000 * 110.84546 * 216.34816 * 4 2 1 35 35 H 1.00898 * 111.00193 * 30.94467 * 7 5 4 36 36 H 1.08999 * 109.47478 * 294.29426 * 10 8 7 37 37 H 1.09000 * 109.47101 * 54.29369 * 10 8 7 38 38 H 0.97006 * 120.00074 * 180.02562 * 14 13 11 39 39 H 1.07996 * 119.99579 * 359.97438 * 20 19 8 40 40 H 1.08000 * 119.99952 * 179.72195 * 21 20 19 41 41 H 1.08000 * 120.00000 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.00100 * 179.97438 * 23 22 21 43 43 H 1.07996 * 119.99931 * 180.11114 * 24 23 22 44 44 H 1.09001 * 110.31146 * 82.46935 * 25 5 4 45 45 H 1.09001 * 110.30983 * 204.63373 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0506 1.4387 0.0000 4 6 2.0538 -0.7465 1.2458 5 6 2.3682 -2.1569 0.6769 6 1 1.4733 -2.7787 0.6515 7 7 3.4404 -2.8089 1.4407 8 6 3.3481 -4.2711 1.3345 9 1 2.9422 -4.5398 0.3592 10 6 2.4284 -4.8053 2.4344 11 6 2.2216 -6.2855 2.2414 12 1 2.6817 -6.7905 1.4049 13 6 1.4450 -6.9951 3.1328 14 7 0.8844 -6.3801 4.1510 15 14 1.1882 -8.8297 2.8932 16 1 2.2533 -9.5764 3.6096 17 1 -0.1388 -9.2186 3.4346 18 1 1.2458 -9.1527 1.4448 19 6 4.7205 -4.8738 1.4907 20 6 5.1013 -5.9404 0.6981 21 6 6.3604 -6.4928 0.8411 22 6 7.2384 -5.9790 1.7770 23 6 6.8570 -4.9136 2.5709 24 6 5.5982 -4.3605 2.4273 25 6 2.8408 -1.7981 -0.7544 26 8 2.0160 -0.6926 -1.1557 27 1 -0.3633 0.4993 0.8982 28 1 -0.3633 0.5281 -0.8815 29 1 -0.3632 -1.0276 -0.0167 30 1 3.1405 1.4307 -0.0167 31 1 1.6776 1.9601 -0.8816 32 1 1.7049 1.9503 0.8982 33 1 1.2851 -0.8016 2.0166 34 1 2.9572 -0.2731 1.6304 35 1 3.4272 -2.5148 2.4058 36 1 2.8842 -4.6260 3.4081 37 1 1.4668 -4.2945 2.3838 38 1 0.3384 -6.8793 4.7784 39 1 4.4152 -6.3420 -0.0328 40 1 6.6563 -7.3290 0.2249 41 1 8.2220 -6.4109 1.8890 42 1 7.5428 -4.5124 3.3024 43 1 5.3008 -3.5270 3.0463 44 1 3.8900 -1.5029 -0.7435 45 1 2.6921 -2.6443 -1.4252 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417948762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:55 Heat of formation + Delta-G solvation = -51.568736 kcal Electronic energy + Delta-G solvation = -23467.731620 eV Core-core repulsion = 20255.484044 eV Total energy + Delta-G solvation = -3212.247576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.03535 -40.09371 -37.42691 -34.97790 -34.12693 -33.15324 -31.61457 -30.40491 -29.46766 -28.24044 -26.76882 -25.96464 -23.88277 -23.32223 -21.99738 -21.37874 -20.65595 -18.57993 -17.80137 -17.37399 -16.86018 -16.62990 -16.16868 -15.86304 -15.68803 -15.31263 -14.88928 -14.44805 -14.43610 -14.33194 -14.28514 -14.04483 -13.73025 -13.40055 -13.14414 -13.07259 -12.93478 -12.79393 -12.63114 -12.55329 -12.48018 -12.15998 -12.01976 -11.82111 -11.64078 -11.54890 -11.46467 -11.19263 -10.58286 -10.51210 -9.61382 -9.51067 -9.21814 -8.20485 -6.28876 0.70434 0.71848 1.36847 1.37498 1.47429 2.38451 2.72995 3.06767 3.14299 3.26760 3.48311 3.85733 3.92209 4.10392 4.13354 4.19683 4.22732 4.30534 4.37405 4.42356 4.50567 4.67683 4.71930 4.76124 4.78473 4.80528 4.84229 4.91470 4.94164 4.96834 4.99214 5.03128 5.21681 5.26675 5.32865 5.39136 5.42409 5.50899 5.67553 5.77251 5.79558 5.87749 6.06799 6.13271 6.31050 6.33958 6.41962 6.84622 7.39145 8.90510 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.005286 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.547690 B = 5295.887200 C = 6870.300556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.096 3.904 3 C -0.147 4.147 4 C -0.142 4.142 5 C 0.053 3.947 6 H 0.042 0.958 7 N -0.660 5.660 8 C 0.138 3.862 9 H 0.062 0.938 10 C 0.020 3.980 11 C -0.521 4.521 12 H 0.062 0.938 13 C 0.005 3.995 14 N -0.932 5.932 15 Si 0.951 3.049 16 H -0.276 1.276 17 H -0.284 1.284 18 H -0.263 1.263 19 C -0.048 4.048 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.137 4.137 23 C -0.129 4.129 24 C -0.118 4.118 25 C 0.069 3.931 26 O -0.392 6.392 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.344 0.656 36 H -0.003 1.003 37 H -0.010 1.010 38 H 0.261 0.739 39 H 0.110 0.890 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.117 0.883 44 H 0.071 0.929 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.013 10.680 -6.132 14.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.057 3.943 3 C -0.204 4.204 4 C -0.179 4.179 5 C -0.057 4.057 6 H 0.060 0.940 7 N -0.291 5.291 8 C 0.028 3.972 9 H 0.080 0.920 10 C -0.018 4.018 11 C -0.560 4.560 12 H 0.080 0.920 13 C -0.192 4.192 14 N -0.573 5.573 15 Si 0.777 3.223 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.188 1.188 19 C -0.048 4.048 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.155 4.155 23 C -0.147 4.147 24 C -0.136 4.136 25 C -0.008 4.008 26 O -0.312 6.312 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.163 0.837 36 H 0.015 0.985 37 H 0.008 0.992 38 H 0.070 0.930 39 H 0.128 0.872 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.135 0.865 44 H 0.089 0.911 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.308 10.797 -6.722 14.669 hybrid contribution -1.418 -1.493 0.983 2.282 sum 5.890 9.305 -5.739 12.418 Atomic orbital electron populations 1.22103 0.93633 1.01978 1.03288 1.22188 0.94552 0.93277 0.84253 1.22058 1.01472 0.93679 1.03222 1.23352 1.02834 0.93717 0.98044 1.23105 0.92563 0.95098 0.94957 0.94027 1.60650 1.45716 1.05737 1.16963 1.20446 0.92102 0.86152 0.98471 0.91960 1.19499 0.93052 0.95774 0.93466 1.21487 1.29416 0.94521 1.10589 0.92025 1.25801 0.95651 1.02754 0.95039 1.70070 1.34215 1.37640 1.15332 0.85646 0.77370 0.80494 0.78831 1.20146 1.20986 1.18761 1.19714 0.94403 0.95291 0.95424 1.21086 0.96849 0.96699 1.00243 1.21307 0.93558 1.00312 0.99491 1.21348 1.00494 0.97262 0.96417 1.21363 0.96243 0.97097 0.99977 1.20981 0.94296 1.00251 0.98090 1.23241 0.94858 0.88544 0.94155 1.88386 1.67728 1.43899 1.31147 0.89797 0.91445 0.93759 0.92263 0.91734 0.89776 0.89773 0.88571 0.83738 0.98459 0.99176 0.93016 0.87173 0.84508 0.83835 0.84262 0.86499 0.91091 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.73 71.98 0.63 -2.78 16 2 C 0.10 2.33 1.27 -10.32 -0.01 2.31 16 3 C -0.15 -2.79 8.75 71.98 0.63 -2.16 16 4 C -0.14 -3.56 5.50 31.85 0.18 -3.39 16 5 C 0.05 1.67 3.17 46.37 0.15 1.82 16 6 H 0.04 1.54 7.49 -2.39 -0.02 1.52 16 7 N -0.66 -22.07 5.58 -465.89 -2.60 -24.67 16 8 C 0.14 5.55 2.07 44.17 0.09 5.64 16 9 H 0.06 2.61 7.67 -2.39 -0.02 2.60 16 10 C 0.02 1.02 4.39 29.85 0.13 1.15 16 11 C -0.52 -28.66 8.58 25.60 0.22 -28.44 16 12 H 0.06 3.29 6.62 -2.91 -0.02 3.27 16 13 C 0.01 0.30 5.46 84.66 0.46 0.76 16 14 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 15 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 19 C -0.05 -1.84 4.49 -19.87 -0.09 -1.93 16 20 C -0.13 -4.76 8.75 22.27 0.19 -4.57 16 21 C -0.13 -3.97 10.05 22.27 0.22 -3.75 16 22 C -0.14 -3.87 10.05 22.27 0.22 -3.64 16 23 C -0.13 -3.85 10.05 22.27 0.22 -3.63 16 24 C -0.12 -4.12 9.32 22.27 0.21 -3.92 16 25 C 0.07 2.06 7.48 72.65 0.54 2.60 16 26 O -0.39 -11.54 10.68 -148.98 -1.59 -13.13 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 2.07 7.82 -2.39 -0.02 2.05 16 34 H 0.10 2.19 7.85 -2.39 -0.02 2.17 16 35 H 0.34 11.30 7.65 -89.70 -0.69 10.61 16 36 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H -0.01 -0.55 7.75 -2.39 -0.02 -0.57 16 38 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 39 H 0.11 4.00 7.83 -2.91 -0.02 3.98 16 40 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 42 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 43 H 0.12 3.89 7.35 -2.91 -0.02 3.86 16 44 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -63.63 362.27 2.38 -61.24 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.26 Total: 29.66 kcal Atomic # 6 Polarization: -47.90 SS G_CDS: 4.00 Total: -43.91 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -2.31 Total: -80.17 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -1.59 Total: -13.13 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -63.63 2.38 -61.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417948762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.676 kcal (2) G-P(sol) polarization free energy of solvation -63.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds