Wall clock time and date at job start Tue Mar 31 2020 06:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46632 * 2 1 4 4 C 1.53002 * 109.46948 * 119.99729 * 2 1 3 5 5 C 1.50706 * 109.46931 * 299.99878 * 4 2 1 6 6 H 1.07999 * 120.00193 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99398 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 12 12 H 1.48498 * 109.47295 * 60.00420 * 9 7 5 13 13 C 1.52996 * 109.47245 * 239.99973 * 2 1 3 14 14 N 1.46896 * 109.47496 * 59.99871 * 13 2 1 15 15 C 1.46895 * 111.00306 * 179.97438 * 14 13 2 16 16 H 1.09005 * 109.42279 * 324.99927 * 15 14 13 17 17 C 1.52970 * 109.42174 * 84.87735 * 15 14 13 18 18 O 1.43189 * 108.49623 * 169.36068 * 17 15 14 19 19 C 1.42725 * 113.07457 * 289.24629 * 18 17 15 20 20 C 1.50659 * 110.26340 * 51.80037 * 19 18 17 21 21 C 1.38636 * 118.71238 * 164.16418 * 20 19 18 22 22 C 1.38059 * 120.29929 * 179.53798 * 21 20 19 23 23 C 1.38257 * 119.89097 * 0.02562 * 22 21 20 24 24 C 1.38064 * 119.86866 * 0.08708 * 23 22 21 25 25 C 1.37900 * 121.50379 * 343.87798 * 20 19 18 26 26 H 1.08992 * 109.47199 * 299.99759 * 1 2 3 27 27 H 1.09001 * 109.47420 * 60.00585 * 1 2 3 28 28 H 1.09004 * 109.46832 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46968 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47194 * 299.99548 * 3 2 1 31 31 H 1.09002 * 109.47398 * 59.99728 * 3 2 1 32 32 H 1.09000 * 109.46986 * 180.02562 * 4 2 1 33 33 H 1.08992 * 109.46974 * 60.00500 * 4 2 1 34 34 H 0.97000 * 119.99706 * 359.97438 * 8 7 5 35 35 H 1.09000 * 109.46870 * 179.97438 * 13 2 1 36 36 H 1.09004 * 109.47108 * 299.99712 * 13 2 1 37 37 H 1.00900 * 111.00019 * 56.03840 * 14 13 2 38 38 H 1.08999 * 109.63822 * 288.99288 * 17 15 14 39 39 H 1.08999 * 109.63416 * 49.59966 * 17 15 14 40 40 H 1.09006 * 109.34111 * 291.55292 * 19 18 17 41 41 H 1.09004 * 109.20472 * 171.95845 * 19 18 17 42 42 H 1.08004 * 119.85450 * 359.55648 * 21 20 19 43 43 H 1.07999 * 120.05017 * 179.97438 * 22 21 20 44 44 H 1.08006 * 120.06434 * 180.02562 * 23 22 21 45 45 H 1.08003 * 119.86272 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0107 2.4797 6 1 0.9164 0.8672 2.3806 7 6 1.8712 -0.4814 3.7320 8 7 2.6281 -1.5501 3.8527 9 14 1.2479 0.3989 5.2571 10 1 1.7440 -0.3003 6.4697 11 1 1.7419 1.7993 5.2570 12 1 -0.2371 0.3977 5.2573 13 6 2.0401 -0.7212 -1.2492 14 7 1.5505 -0.0289 -2.4487 15 6 2.0220 -0.6946 -3.6702 16 1 3.0241 -1.0899 -3.5038 17 6 1.0742 -1.8426 -4.0221 18 8 1.4004 -2.3152 -5.3338 19 6 1.0441 -1.3946 -6.3646 20 6 1.6055 -0.0296 -6.0622 21 6 1.6587 0.9093 -7.0808 22 6 2.1581 2.1732 -6.8377 23 6 2.6079 2.5048 -5.5731 24 6 2.5576 1.5700 -4.5584 25 6 2.0573 0.3007 -4.8019 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.1300 -0.7208 1.2495 33 1 1.6768 -1.7488 1.2493 34 1 2.9514 -2.0074 3.0607 35 1 3.1301 -0.7208 -1.2494 36 1 1.6768 -1.7490 -1.2492 37 1 1.8197 0.9435 -2.4401 38 1 1.1957 -2.6517 -3.3018 39 1 0.0446 -1.4855 -4.0060 40 1 -0.0420 -1.3313 -6.4325 41 1 1.4451 -1.7475 -7.3148 42 1 1.3076 0.6510 -8.0690 43 1 2.1980 2.9014 -7.6343 44 1 2.9987 3.4929 -5.3797 45 1 2.9094 1.8290 -3.5706 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418101733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:01 Heat of formation + Delta-G solvation = -36.185945 kcal Electronic energy + Delta-G solvation = -23348.719573 eV Core-core repulsion = 20137.139046 eV Total energy + Delta-G solvation = -3211.580528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.61055 -37.85690 -37.58657 -35.01171 -32.56784 -31.90638 -30.75404 -28.91165 -26.56822 -26.41041 -25.66662 -25.30868 -23.54641 -22.55427 -21.65475 -20.17655 -18.37200 -17.47041 -16.58163 -16.41911 -15.96924 -15.56757 -15.27507 -14.74596 -14.47170 -14.11457 -14.11265 -13.70451 -13.52968 -13.12637 -13.05042 -12.76424 -12.38937 -12.29608 -12.07785 -11.74338 -11.62677 -11.28631 -11.11213 -11.02352 -10.88437 -10.65475 -10.56866 -10.12370 -10.07202 -9.85187 -9.81844 -9.32693 -9.06991 -8.89343 -8.40834 -8.28088 -8.19377 -6.29632 -3.97597 1.08376 1.13182 3.45724 3.47451 3.47562 3.65176 3.65945 4.33265 4.43474 4.51484 4.59238 4.62235 4.79537 4.94737 5.07748 5.11268 5.14749 5.36142 5.38903 5.44983 5.55046 5.60876 5.68879 5.73494 5.75674 5.83253 5.86420 6.10810 6.16821 6.19939 6.27565 6.32526 6.37833 6.54462 6.64829 6.72547 6.74062 6.88804 7.08467 7.10171 7.16314 7.25051 7.40481 7.48912 7.59497 8.29036 8.52499 8.94774 9.73019 11.10302 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028292 B = 0.003398 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.436308 B = 8236.977972 C = 8845.191985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.051 4.051 3 C -0.129 4.129 4 C 0.021 3.979 5 C -0.588 4.588 6 H 0.053 0.947 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 1.065 2.935 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.289 1.289 13 C 0.066 3.934 14 N -0.676 5.676 15 C 0.092 3.908 16 H 0.063 0.937 17 C 0.070 3.930 18 O -0.376 6.376 19 C 0.101 3.899 20 C -0.114 4.114 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.115 4.115 24 C -0.114 4.114 25 C -0.067 4.067 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.033 0.967 31 H 0.067 0.933 32 H 0.003 0.997 33 H 0.006 0.994 34 H 0.268 0.732 35 H 0.025 0.975 36 H 0.068 0.932 37 H 0.344 0.656 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.948 5.087 -22.300 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.051 4.051 3 C -0.187 4.187 4 C -0.017 4.017 5 C -0.626 4.626 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.554 5.554 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.215 1.215 13 C -0.063 4.063 14 N -0.312 5.312 15 C -0.018 4.018 16 H 0.081 0.919 17 C -0.007 4.007 18 O -0.294 6.294 19 C 0.024 3.976 20 C -0.115 4.115 21 C -0.132 4.132 22 C -0.140 4.140 23 C -0.133 4.133 24 C -0.133 4.133 25 C -0.067 4.067 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.021 0.979 33 H 0.024 0.976 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.166 0.834 38 H 0.117 0.883 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.438 4.540 -20.670 21.302 hybrid contribution 0.915 0.679 -1.602 1.966 sum -1.523 5.219 -22.271 22.925 Atomic orbital electron populations 1.21598 0.94719 1.00622 1.00367 1.20488 0.96049 0.94941 0.93668 1.21774 0.99629 0.96669 1.00593 1.19247 0.95207 0.95159 0.92044 1.22014 1.34489 1.14293 0.91847 0.92916 1.25781 0.95375 0.96595 1.01367 1.70779 1.32761 1.18430 1.33381 0.83595 0.75908 0.75288 0.75821 1.20928 1.21584 1.21510 1.22250 0.96442 0.98258 0.89306 1.60659 1.63659 1.06599 1.00236 1.20949 0.98302 0.93689 0.88840 0.91937 1.22638 0.98121 0.96393 0.83541 1.88074 1.84095 1.42060 1.15141 1.21431 0.98795 0.85601 0.91789 1.20250 1.00358 0.97256 0.93625 1.20956 1.00216 0.93471 0.98514 1.21079 0.99359 0.96483 0.97077 1.21111 0.99701 0.99379 0.93112 1.21040 0.99745 0.93082 0.99418 1.19605 0.98307 0.94778 0.94023 0.92487 0.93792 0.94196 0.94149 0.94826 0.91420 0.97869 0.97577 0.92207 0.95639 0.91369 0.83374 0.88251 0.91473 0.91598 0.87949 0.85879 0.85929 0.85831 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 2 C -0.05 -1.01 0.60 -154.51 -0.09 -1.10 16 3 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 4 C 0.02 0.52 3.35 -27.88 -0.09 0.42 16 5 C -0.59 -16.15 7.65 -34.44 -0.26 -16.41 16 6 H 0.05 1.42 5.68 -52.49 -0.30 1.12 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.25 16 8 N -0.92 -28.09 13.65 55.43 0.76 -27.33 16 9 Si 1.07 25.30 29.90 -169.99 -5.08 20.22 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.07 1.11 4.44 -3.83 -0.02 1.10 16 14 N -0.68 -9.76 5.51 -107.95 -0.60 -10.35 16 15 C 0.09 1.23 2.80 -68.86 -0.19 1.03 16 16 H 0.06 0.88 7.80 -51.93 -0.40 0.48 16 17 C 0.07 0.90 6.26 37.14 0.23 1.13 16 18 O -0.38 -4.78 10.80 -35.23 -0.38 -5.16 16 19 C 0.10 1.01 6.66 35.99 0.24 1.25 16 20 C -0.11 -1.27 5.80 -104.62 -0.61 -1.88 16 21 C -0.11 -1.06 9.67 -39.50 -0.38 -1.44 16 22 C -0.12 -1.11 10.05 -39.64 -0.40 -1.51 16 23 C -0.11 -1.14 10.05 -39.64 -0.40 -1.54 16 24 C -0.11 -1.32 8.91 -39.51 -0.35 -1.68 16 25 C -0.07 -0.83 5.58 -104.59 -0.58 -1.42 16 26 H 0.06 1.19 6.62 -51.93 -0.34 0.85 16 27 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 31 H 0.07 1.37 6.62 -51.93 -0.34 1.03 16 32 H 0.00 0.08 8.01 -51.93 -0.42 -0.33 16 33 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 34 H 0.27 8.18 7.22 -40.82 -0.29 7.88 16 35 H 0.03 0.44 8.05 -51.93 -0.42 0.02 16 36 H 0.07 1.17 7.67 -51.93 -0.40 0.77 16 37 H 0.34 4.81 4.27 -39.29 -0.17 4.65 16 38 H 0.10 1.26 7.77 -51.93 -0.40 0.86 16 39 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 45 H 0.12 1.36 6.66 -52.48 -0.35 1.01 16 LS Contribution 347.79 15.07 5.24 5.24 Total: -1.00 -30.64 347.79 -9.64 -40.28 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -7.16 Total: 2.93 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -2.41 Total: -25.82 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.16 Total: -37.68 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.38 Total: -5.16 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.22 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.64 -9.64 -40.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418101733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.090 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds