Wall clock time and date at job start Tue Mar 31 2020 06:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46632 * 2 1 4 4 C 1.53002 * 109.46948 * 119.99729 * 2 1 3 5 5 C 1.50706 * 109.46931 * 299.99878 * 4 2 1 6 6 H 1.07999 * 120.00193 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99398 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 12 12 H 1.48498 * 109.47295 * 60.00420 * 9 7 5 13 13 C 1.52996 * 109.47245 * 239.99973 * 2 1 3 14 14 N 1.46896 * 109.47496 * 59.99871 * 13 2 1 15 15 C 1.46895 * 111.00306 * 179.97438 * 14 13 2 16 16 H 1.09005 * 109.42279 * 324.99927 * 15 14 13 17 17 C 1.52970 * 109.42174 * 84.87735 * 15 14 13 18 18 O 1.43189 * 108.49623 * 169.36068 * 17 15 14 19 19 C 1.42725 * 113.07457 * 289.24629 * 18 17 15 20 20 C 1.50659 * 110.26340 * 51.80037 * 19 18 17 21 21 C 1.38636 * 118.71238 * 164.16418 * 20 19 18 22 22 C 1.38059 * 120.29929 * 179.53798 * 21 20 19 23 23 C 1.38257 * 119.89097 * 0.02562 * 22 21 20 24 24 C 1.38064 * 119.86866 * 0.08708 * 23 22 21 25 25 C 1.37900 * 121.50379 * 343.87798 * 20 19 18 26 26 H 1.08992 * 109.47199 * 299.99759 * 1 2 3 27 27 H 1.09001 * 109.47420 * 60.00585 * 1 2 3 28 28 H 1.09004 * 109.46832 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46968 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47194 * 299.99548 * 3 2 1 31 31 H 1.09002 * 109.47398 * 59.99728 * 3 2 1 32 32 H 1.09000 * 109.46986 * 180.02562 * 4 2 1 33 33 H 1.08992 * 109.46974 * 60.00500 * 4 2 1 34 34 H 0.97000 * 119.99706 * 359.97438 * 8 7 5 35 35 H 1.09000 * 109.46870 * 179.97438 * 13 2 1 36 36 H 1.09004 * 109.47108 * 299.99712 * 13 2 1 37 37 H 1.00900 * 111.00019 * 56.03840 * 14 13 2 38 38 H 1.08999 * 109.63822 * 288.99288 * 17 15 14 39 39 H 1.08999 * 109.63416 * 49.59966 * 17 15 14 40 40 H 1.09006 * 109.34111 * 291.55292 * 19 18 17 41 41 H 1.09004 * 109.20472 * 171.95845 * 19 18 17 42 42 H 1.08004 * 119.85450 * 359.55648 * 21 20 19 43 43 H 1.07999 * 120.05017 * 179.97438 * 22 21 20 44 44 H 1.08006 * 120.06434 * 180.02562 * 23 22 21 45 45 H 1.08003 * 119.86272 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0107 2.4797 6 1 0.9164 0.8672 2.3806 7 6 1.8712 -0.4814 3.7320 8 7 2.6281 -1.5501 3.8527 9 14 1.2479 0.3989 5.2571 10 1 1.7440 -0.3003 6.4697 11 1 1.7419 1.7993 5.2570 12 1 -0.2371 0.3977 5.2573 13 6 2.0401 -0.7212 -1.2492 14 7 1.5505 -0.0289 -2.4487 15 6 2.0220 -0.6946 -3.6702 16 1 3.0241 -1.0899 -3.5038 17 6 1.0742 -1.8426 -4.0221 18 8 1.4004 -2.3152 -5.3338 19 6 1.0441 -1.3946 -6.3646 20 6 1.6055 -0.0296 -6.0622 21 6 1.6587 0.9093 -7.0808 22 6 2.1581 2.1732 -6.8377 23 6 2.6079 2.5048 -5.5731 24 6 2.5576 1.5700 -4.5584 25 6 2.0573 0.3007 -4.8019 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.1300 -0.7208 1.2495 33 1 1.6768 -1.7488 1.2493 34 1 2.9514 -2.0074 3.0607 35 1 3.1301 -0.7208 -1.2494 36 1 1.6768 -1.7490 -1.2492 37 1 1.8197 0.9435 -2.4401 38 1 1.1957 -2.6517 -3.3018 39 1 0.0446 -1.4855 -4.0060 40 1 -0.0420 -1.3313 -6.4325 41 1 1.4451 -1.7475 -7.3148 42 1 1.3076 0.6510 -8.0690 43 1 2.1980 2.9014 -7.6343 44 1 2.9987 3.4929 -5.3797 45 1 2.9094 1.8290 -3.5706 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418101733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:00 Heat of formation + Delta-G solvation = -53.871155 kcal Electronic energy + Delta-G solvation = -23349.486462 eV Core-core repulsion = 20137.139046 eV Total energy + Delta-G solvation = -3212.347416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.48616 -39.26561 -38.51731 -36.38843 -34.52964 -32.68416 -31.78991 -29.96186 -28.46658 -28.01611 -26.87851 -26.38209 -24.94355 -23.95605 -22.63425 -21.08226 -19.98349 -18.54388 -18.40342 -17.46542 -16.88954 -16.53196 -16.40959 -15.89049 -15.70024 -15.60503 -15.21350 -15.08315 -15.02618 -14.35728 -14.16869 -14.00294 -13.64381 -13.55552 -13.23482 -13.21362 -12.90756 -12.77768 -12.63039 -12.46380 -12.33861 -12.07599 -11.95826 -11.73761 -11.61634 -11.49502 -11.11628 -10.80692 -10.48765 -10.44400 -9.95239 -9.67490 -9.33207 -8.59911 -6.28035 0.30864 0.36854 1.53146 1.61492 1.79624 2.59245 2.69057 2.72160 3.23096 3.28811 3.51867 3.70833 3.75562 3.99026 4.03224 4.05906 4.13123 4.19602 4.23956 4.39381 4.43854 4.56232 4.59340 4.64427 4.65404 4.74080 4.80570 4.83547 4.94123 4.99800 5.01960 5.03978 5.08849 5.29934 5.35919 5.43508 5.44418 5.50242 5.53974 5.57566 5.68649 5.81746 6.01310 6.09508 6.15923 6.27332 6.31915 6.67182 7.51848 8.80294 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028292 B = 0.003398 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.436308 B = 8236.977972 C = 8845.191985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.048 4.048 3 C -0.123 4.123 4 C 0.024 3.976 5 C -0.590 4.590 6 H 0.059 0.941 7 C -0.045 4.045 8 N -0.946 5.946 9 Si 1.112 2.888 10 H -0.289 1.289 11 H -0.269 1.269 12 H -0.270 1.270 13 C 0.079 3.921 14 N -0.668 5.668 15 C 0.096 3.904 16 H 0.048 0.952 17 C 0.074 3.926 18 O -0.391 6.391 19 C 0.095 3.905 20 C -0.126 4.126 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.130 4.130 25 C -0.092 4.092 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.031 0.969 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.048 0.952 32 H -0.021 1.021 33 H -0.019 1.019 34 H 0.253 0.747 35 H 0.018 0.982 36 H 0.062 0.938 37 H 0.348 0.652 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.143 0.857 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 7.079 -24.530 25.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.049 4.049 3 C -0.180 4.180 4 C -0.013 4.013 5 C -0.628 4.628 6 H 0.077 0.923 7 C -0.242 4.242 8 N -0.585 5.585 9 Si 0.934 3.066 10 H -0.214 1.214 11 H -0.194 1.194 12 H -0.195 1.195 13 C -0.050 4.050 14 N -0.304 5.304 15 C -0.013 4.013 16 H 0.066 0.934 17 C -0.003 4.003 18 O -0.309 6.309 19 C 0.019 3.981 20 C -0.127 4.127 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.149 4.149 25 C -0.093 4.093 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.068 0.932 32 H -0.002 1.002 33 H -0.001 1.001 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.171 0.829 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.143 0.857 42 H 0.170 0.830 43 H 0.169 0.831 44 H 0.161 0.839 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.478 6.546 -22.936 24.104 hybrid contribution 1.253 0.071 -1.043 1.632 sum -2.225 6.616 -23.980 24.975 Atomic orbital electron populations 1.21498 0.94024 1.00227 1.00608 1.20376 0.96480 0.95499 0.92516 1.21689 0.99416 0.95613 1.01278 1.19171 0.93593 0.94282 0.94256 1.22389 1.33578 1.14138 0.92682 0.92307 1.27306 0.95032 0.96589 1.05225 1.70917 1.34918 1.20045 1.32628 0.82989 0.76490 0.75043 0.72029 1.21448 1.19441 1.19496 1.21952 0.95870 0.97847 0.89330 1.60590 1.63341 1.06677 0.99746 1.20871 0.97559 0.94196 0.88719 0.93413 1.22533 0.97910 0.95964 0.83939 1.88047 1.84361 1.43111 1.15377 1.21698 0.99753 0.84917 0.91753 1.20460 1.00477 0.98135 0.93594 1.21311 0.99384 0.93134 0.99262 1.21483 0.97926 0.96971 0.97411 1.21409 0.99408 0.99887 0.93164 1.21134 1.00423 0.93334 0.99995 1.19613 1.00358 0.94989 0.94298 0.94222 0.91350 0.94941 0.94476 0.91509 0.93248 1.00248 1.00059 0.93809 0.96331 0.91929 0.82918 0.88922 0.91439 0.90317 0.85677 0.83006 0.83071 0.83944 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.06 8.06 71.98 0.58 -3.48 16 2 C -0.05 -1.92 0.60 -52.18 -0.03 -1.95 16 3 C -0.12 -4.46 7.89 71.98 0.57 -3.89 16 4 C 0.02 1.26 3.35 29.85 0.10 1.36 16 5 C -0.59 -32.93 7.65 25.60 0.20 -32.73 16 6 H 0.06 3.17 5.68 -2.91 -0.02 3.15 16 7 C -0.05 -2.63 5.46 84.66 0.46 -2.17 16 8 N -0.95 -59.74 13.65 21.45 0.29 -59.45 16 9 Si 1.11 50.81 29.90 68.60 2.05 52.86 16 10 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 C 0.08 2.71 4.44 86.30 0.38 3.09 16 14 N -0.67 -18.88 5.51 -495.44 -2.73 -21.61 16 15 C 0.10 2.55 2.80 44.17 0.12 2.67 16 16 H 0.05 1.39 7.80 -2.38 -0.02 1.37 16 17 C 0.07 1.88 6.26 71.97 0.45 2.33 16 18 O -0.39 -9.63 10.80 -148.98 -1.61 -11.24 16 19 C 0.09 1.71 6.66 71.22 0.47 2.19 16 20 C -0.13 -2.54 5.80 -19.86 -0.12 -2.66 16 21 C -0.11 -1.74 9.67 22.32 0.22 -1.52 16 22 C -0.12 -1.76 10.05 22.23 0.22 -1.54 16 23 C -0.12 -2.09 10.05 22.23 0.22 -1.87 16 24 C -0.13 -2.84 8.91 22.31 0.20 -2.64 16 25 C -0.09 -2.20 5.58 -19.84 -0.11 -2.31 16 26 H 0.04 1.63 6.62 -2.39 -0.02 1.61 16 27 H 0.07 2.26 7.60 -2.39 -0.02 2.25 16 28 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.97 6.57 -2.39 -0.02 1.95 16 31 H 0.05 1.97 6.62 -2.39 -0.02 1.95 16 32 H -0.02 -1.16 8.01 -2.39 -0.02 -1.18 16 33 H -0.02 -1.06 8.01 -2.39 -0.02 -1.08 16 34 H 0.25 16.20 7.22 -92.71 -0.67 15.53 16 35 H 0.02 0.66 8.05 -2.39 -0.02 0.64 16 36 H 0.06 2.21 7.67 -2.38 -0.02 2.19 16 37 H 0.35 9.33 4.27 -89.69 -0.38 8.95 16 38 H 0.09 2.41 7.77 -2.39 -0.02 2.39 16 39 H 0.07 1.69 8.07 -2.39 -0.02 1.67 16 40 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 43 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 44 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 45 H 0.12 2.54 6.66 -2.91 -0.02 2.52 16 Total: -1.00 -67.43 347.79 2.63 -64.79 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.69 Total: 19.74 kcal Atomic # 6 Polarization: -49.05 SS G_CDS: 3.94 Total: -45.10 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -2.44 Total: -81.06 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -1.61 Total: -11.24 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 2.05 Total: 52.86 kcal Total: -67.43 2.63 -64.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418101733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.923 kcal (2) G-P(sol) polarization free energy of solvation -67.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds