Wall clock time and date at job start Tue Mar 31 2020 06:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46922 * 2 1 4 4 C 1.53004 * 109.47188 * 119.99954 * 2 1 3 5 5 C 1.52997 * 109.46958 * 300.00300 * 4 2 1 6 6 C 1.52995 * 109.47085 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47301 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 90.00016 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97953 * 7 6 5 13 13 C 1.50697 * 109.47020 * 239.99993 * 2 1 3 14 14 O 1.21290 * 119.99863 * 239.99757 * 13 2 1 15 15 N 1.34772 * 120.00259 * 59.99977 * 13 2 1 16 16 C 1.46506 * 120.00032 * 179.97438 * 15 13 2 17 17 C 1.50707 * 109.46889 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99643 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99764 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00121 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99921 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47274 * 59.99884 * 21 19 17 23 23 H 1.48507 * 109.47137 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46821 * 299.99876 * 21 19 17 25 25 H 1.08992 * 109.46703 * 300.00034 * 1 2 3 26 26 H 1.08997 * 109.46778 * 60.00395 * 1 2 3 27 27 H 1.08996 * 109.46818 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46658 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47072 * 299.99425 * 3 2 1 30 30 H 1.08992 * 109.47002 * 60.00154 * 3 2 1 31 31 H 1.08992 * 109.47400 * 180.02562 * 4 2 1 32 32 H 1.08999 * 109.46626 * 59.99829 * 4 2 1 33 33 H 1.08995 * 109.47671 * 59.99728 * 5 4 2 34 34 H 1.09004 * 109.46984 * 299.99744 * 5 4 2 35 35 H 1.09005 * 109.47610 * 59.99944 * 6 5 4 36 36 H 1.09000 * 109.47256 * 299.99285 * 6 5 4 37 37 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 39 39 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 40 40 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 41 41 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 42 42 H 0.96998 * 120.00086 * 359.97438 * 15 13 2 43 43 H 1.08992 * 109.47119 * 300.00264 * 16 15 13 44 44 H 1.09004 * 109.47050 * 60.00257 * 16 15 13 45 45 H 0.96997 * 119.99574 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.5300 0.0000 2.4985 6 6 2.0395 -0.7216 3.7477 7 6 1.5376 -0.0108 4.9782 8 6 0.3295 -0.3754 5.5425 9 6 -0.1306 0.2762 6.6715 10 6 0.6177 1.2919 7.2365 11 6 1.8232 1.6601 6.6691 12 6 2.2855 1.0054 5.5428 13 6 2.0324 -0.7104 -1.2304 14 8 2.7297 -1.6965 -1.1191 15 7 1.7068 -0.2500 -2.4545 16 6 2.1956 -0.9404 -3.6507 17 6 1.6937 -0.2296 -4.8812 18 1 1.0731 0.6486 -4.7821 19 6 2.0268 -0.7007 -6.1334 20 7 2.7822 -1.7705 -6.2541 21 14 1.4052 0.1807 -7.6587 22 1 1.9012 1.5804 -7.6583 23 1 1.8996 -0.5199 -8.8712 24 1 -0.0798 0.1817 -7.6591 25 1 -0.3632 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 -0.7209 1.2495 32 1 1.6767 -1.7489 1.2492 33 1 0.4401 0.0000 2.4985 34 1 1.8934 1.0277 2.4985 35 1 3.1296 -0.7220 3.7480 36 1 1.6757 -1.7491 3.7475 37 1 -0.2549 -1.1693 5.1013 38 1 -1.0747 -0.0084 7.1121 39 1 0.2583 1.8007 8.1189 40 1 2.4058 2.4566 7.1080 41 1 3.2298 1.2897 5.1024 42 1 1.1489 0.5384 -2.5436 43 1 3.2855 -0.9400 -3.6505 44 1 1.8326 -1.9682 -3.6509 45 1 3.0168 -2.1017 -7.1351 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427610860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:52 Heat of formation + Delta-G solvation = -51.014460 kcal Electronic energy + Delta-G solvation = -22187.712248 eV Core-core repulsion = 18975.488708 eV Total energy + Delta-G solvation = -3212.223541 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.75258 -39.31276 -36.37527 -34.18410 -33.79354 -32.24468 -31.10263 -30.13275 -27.24237 -27.22209 -26.16059 -23.94467 -22.78376 -22.59195 -21.17970 -20.39118 -18.64926 -17.08466 -16.72069 -15.72125 -15.66113 -15.49215 -15.16998 -14.80958 -14.52095 -14.27972 -13.80623 -13.61472 -13.51754 -13.23179 -12.94122 -12.90989 -12.27892 -12.18886 -12.03528 -11.81047 -11.66602 -11.58030 -11.53492 -11.23423 -11.00774 -10.91009 -10.81270 -10.78158 -10.52589 -10.36305 -10.29352 -9.39332 -9.14321 -8.91165 -8.79775 -8.71253 -7.83198 -6.15342 -4.22257 1.14604 1.17819 3.25584 3.30341 3.31855 3.44543 3.56327 4.08939 4.36803 4.59236 4.62280 4.76375 4.84311 4.90547 4.95065 5.10387 5.14677 5.20577 5.27827 5.34769 5.35348 5.46267 5.61612 5.62951 5.70160 5.74400 5.84849 5.84970 5.93019 5.93165 6.05433 6.14754 6.15137 6.25553 6.27927 6.28896 6.42113 6.51102 6.54348 6.79802 7.33654 7.48762 7.54236 7.68738 7.99146 8.67592 8.80455 9.15725 9.44560 10.94799 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.043003 B = 0.002409 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.966400 B =11621.659981 C =11776.309955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C -0.140 4.140 4 C -0.092 4.092 5 C -0.115 4.115 6 C -0.084 4.084 7 C -0.075 4.075 8 C -0.119 4.119 9 C -0.119 4.119 10 C -0.130 4.130 11 C -0.119 4.119 12 C -0.119 4.119 13 C 0.507 3.493 14 O -0.558 6.558 15 N -0.711 5.711 16 C 0.250 3.750 17 C -0.543 4.543 18 H 0.062 0.938 19 C 0.063 3.937 20 N -0.886 5.886 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.389 0.611 43 H 0.025 0.975 44 H 0.026 0.974 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 7.349 24.249 25.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.087 4.087 3 C -0.198 4.198 4 C -0.130 4.130 5 C -0.152 4.152 6 C -0.121 4.121 7 C -0.075 4.075 8 C -0.137 4.137 9 C -0.137 4.137 10 C -0.148 4.148 11 C -0.137 4.137 12 C -0.137 4.137 13 C 0.291 3.709 14 O -0.437 6.437 15 N -0.358 5.358 16 C 0.129 3.871 17 C -0.581 4.581 18 H 0.080 0.920 19 C -0.141 4.141 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.222 0.778 43 H 0.043 0.957 44 H 0.044 0.956 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.596 6.500 24.132 25.411 hybrid contribution -0.570 0.807 -0.976 1.389 sum -5.166 7.307 23.156 24.825 Atomic orbital electron populations 1.21889 0.93116 1.02504 1.02269 1.20793 0.96899 0.96552 0.94471 1.21890 1.01585 0.94035 1.02268 1.21377 1.01281 0.99120 0.91246 1.21719 1.01053 0.99578 0.92858 1.20672 1.01114 0.98981 0.91371 1.20013 0.94659 0.96267 0.96529 1.21100 0.96019 1.00301 0.96271 1.21147 0.99744 0.96514 0.96335 1.21123 0.95407 0.98048 1.00257 1.21147 0.96444 0.99795 0.96352 1.21099 1.00033 0.96255 0.96304 1.20370 0.80900 0.84758 0.84833 1.90641 1.39074 1.27000 1.86991 1.46453 1.51653 1.31150 1.06590 1.19082 0.95223 0.92838 0.79971 1.21190 1.33188 1.13090 0.90628 0.92025 1.24957 0.94876 0.94998 0.99223 1.69970 1.35677 1.22409 1.24247 0.86480 0.79138 0.79605 0.81705 1.20074 1.21077 1.20080 0.91709 0.92091 0.92227 0.92226 0.92091 0.91709 0.91282 0.91280 0.91550 0.91545 0.90866 0.90861 0.86076 0.86262 0.86387 0.86260 0.86077 0.77804 0.95657 0.95650 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.02 37.16 0.30 -1.43 16 2 C -0.08 -1.20 0.64 -155.65 -0.10 -1.30 16 3 C -0.14 -1.73 8.02 37.16 0.30 -1.43 16 4 C -0.09 -1.21 3.56 -26.73 -0.10 -1.31 16 5 C -0.11 -1.15 4.49 -26.74 -0.12 -1.27 16 6 C -0.08 -0.79 5.34 -27.88 -0.15 -0.94 16 7 C -0.07 -0.71 5.13 -104.62 -0.54 -1.24 16 8 C -0.12 -1.07 9.70 -39.58 -0.38 -1.45 16 9 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 10 C -0.13 -1.04 10.05 -39.58 -0.40 -1.44 16 11 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 12 C -0.12 -1.07 9.70 -39.58 -0.38 -1.45 16 13 C 0.51 10.23 6.48 -10.99 -0.07 10.16 16 14 O -0.56 -13.60 15.98 5.55 0.09 -13.51 16 15 N -0.71 -15.19 5.33 -61.47 -0.33 -15.52 16 16 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 17 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 18 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 21 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 26 H 0.06 0.74 7.56 -51.93 -0.39 0.35 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 29 H 0.06 0.74 7.56 -51.93 -0.39 0.35 16 30 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 31 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 32 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 33 H 0.07 0.64 6.43 -51.93 -0.33 0.31 16 34 H 0.07 0.64 6.43 -51.93 -0.33 0.31 16 35 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 36 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 42 H 0.39 7.23 7.16 -40.82 -0.29 6.94 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 365.99 15.07 5.52 5.52 Total: -1.00 -32.23 365.99 -9.32 -41.55 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.43 Total: 4.27 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -2.88 Total: -12.70 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.41 Total: -41.06 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.23 -9.32 -41.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427610860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.463 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds