Wall clock time and date at job start Tue Mar 31 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 C 1.50692 * 109.47279 * 294.99874 * 4 2 1 6 6 C 1.38237 * 120.00003 * 269.72808 * 5 4 2 7 7 C 1.38243 * 119.99821 * 179.76797 * 6 5 4 8 8 C 1.38231 * 120.00097 * 0.48211 * 7 6 5 9 9 C 1.50695 * 120.00366 * 179.76993 * 8 7 6 10 10 C 1.53005 * 109.47270 * 270.02625 * 9 8 7 11 11 C 1.50696 * 109.46937 * 179.97438 * 10 9 8 12 12 O 1.21281 * 120.00533 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99954 * 179.97438 * 11 10 9 14 14 C 1.46492 * 120.00152 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46980 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00252 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99867 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00120 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99894 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47100 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47291 * 120.00091 * 19 17 15 22 22 H 1.48498 * 109.47165 * 239.99701 * 19 17 15 23 23 C 1.38240 * 120.00131 * 359.78966 * 8 7 6 24 24 C 1.38236 * 120.00003 * 90.00426 * 5 4 2 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 28 28 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 29 29 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 30 30 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 32 32 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 33 33 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 34 34 H 1.07996 * 119.99877 * 359.97438 * 6 5 4 35 35 H 1.07994 * 119.99602 * 180.25387 * 7 6 5 36 36 H 1.09010 * 109.46825 * 30.02030 * 9 8 7 37 37 H 1.09001 * 109.47297 * 150.01918 * 9 8 7 38 38 H 1.09002 * 109.46412 * 299.99446 * 10 9 8 39 39 H 1.08991 * 109.46814 * 59.99228 * 10 9 8 40 40 H 0.97000 * 119.99126 * 0.02562 * 13 11 10 41 41 H 1.08998 * 109.47778 * 300.00271 * 14 13 11 42 42 H 1.09000 * 109.46812 * 60.00634 * 14 13 11 43 43 H 0.97000 * 120.00352 * 180.02562 * 18 17 15 44 44 H 1.07997 * 120.00544 * 179.97438 * 23 8 7 45 45 H 1.08001 * 120.00265 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 -2.1732 -1.1889 6 6 2.4841 -3.0974 -0.6001 7 6 2.1163 -4.4287 -0.5405 8 6 0.9103 -4.8373 -1.0786 9 6 0.5116 -6.2893 -1.0183 10 6 1.0217 -7.0106 -2.2675 11 6 0.6235 -8.4627 -2.2068 12 8 -0.0058 -8.8799 -1.2577 13 7 0.9668 -9.2980 -3.2074 14 6 0.5802 -10.7097 -3.1482 15 6 1.0825 -11.4201 -4.3787 16 1 1.6349 -10.8747 -5.1295 17 6 0.8369 -12.7665 -4.5459 18 7 0.1639 -13.4307 -3.6319 19 14 1.4602 -13.6472 -6.0708 20 1 2.1835 -12.6832 -6.9383 21 1 2.3825 -14.7397 -5.6693 22 1 0.3106 -14.2192 -6.8167 23 6 0.0702 -3.9140 -1.6725 24 6 0.4357 -2.5819 -1.7275 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6055 -0.2617 -2.1370 33 1 3.1264 -0.6442 -1.2952 34 1 3.4283 -2.7789 -0.1837 35 1 2.7728 -5.1500 -0.0768 36 1 0.9463 -6.7488 -0.1305 37 1 -0.5747 -6.3662 -0.9724 38 1 0.5870 -6.5510 -3.1552 39 1 2.1079 -6.9336 -2.3134 40 1 1.4705 -8.9644 -3.9663 41 1 1.0158 -11.1689 -2.2608 42 1 -0.5060 -10.7873 -3.1015 43 1 -0.0086 -14.3780 -3.7494 44 1 -0.8718 -4.2332 -2.0932 45 1 -0.2208 -1.8605 -2.1912 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427647373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:45 Heat of formation + Delta-G solvation = -57.983621 kcal Electronic energy + Delta-G solvation = -21528.918163 eV Core-core repulsion = 18316.392417 eV Total energy + Delta-G solvation = -3212.525746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.86543 -38.75714 -36.71933 -34.26814 -33.62937 -32.30768 -31.02471 -30.45436 -27.70395 -27.47434 -26.38167 -23.84607 -22.79700 -22.19853 -20.83343 -20.18266 -19.54253 -17.14471 -16.37402 -15.93217 -15.66105 -15.15895 -15.07070 -14.98069 -14.62452 -14.57605 -14.22425 -13.68574 -13.49655 -13.04400 -12.95181 -12.79007 -12.56387 -12.41402 -12.11023 -11.95888 -11.76047 -11.67186 -11.51116 -11.23924 -11.08611 -10.95727 -10.93687 -10.90251 -10.75946 -10.71131 -10.31310 -9.37396 -9.07162 -8.97369 -8.73509 -8.50379 -7.86224 -6.16485 -4.23281 1.25210 1.33704 3.23441 3.30512 3.33712 3.41341 3.63081 4.13973 4.37807 4.47084 4.51302 4.63904 4.78277 4.92060 4.93899 5.02415 5.12917 5.19583 5.26519 5.28694 5.32860 5.34904 5.43457 5.48940 5.53545 5.57684 5.60198 5.67138 5.76649 5.89866 5.90134 5.97227 6.00005 6.01920 6.11285 6.31859 6.37166 6.52024 6.65775 6.95262 7.32130 7.46350 7.52823 7.67752 7.97761 8.65103 8.79048 9.13033 9.43579 10.93786 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.044150 B = 0.002118 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.046924 B =13213.998626 C =13438.145099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.075 4.075 5 C -0.089 4.089 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.078 4.078 9 C -0.065 4.065 10 C -0.134 4.134 11 C 0.496 3.504 12 O -0.559 6.559 13 N -0.714 5.714 14 C 0.248 3.752 15 C -0.543 4.543 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.115 4.115 24 C -0.114 4.114 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.391 0.609 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.265 0.735 44 H 0.122 0.878 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.002 27.979 4.789 28.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.112 4.112 5 C -0.089 4.089 6 C -0.135 4.135 7 C -0.132 4.132 8 C -0.078 4.078 9 C -0.103 4.103 10 C -0.174 4.174 11 C 0.281 3.719 12 O -0.439 6.439 13 N -0.362 5.362 14 C 0.127 3.873 15 C -0.581 4.581 16 H 0.082 0.918 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.133 4.133 24 C -0.132 4.132 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.223 0.777 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.140 0.860 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.474 27.457 5.501 28.217 hybrid contribution 0.557 -0.493 -1.214 1.423 sum 4.030 26.964 4.287 27.599 Atomic orbital electron populations 1.21924 0.95124 1.02343 1.01426 1.21087 0.96202 0.95721 0.98014 1.21856 1.00902 0.95963 1.01777 1.20662 1.00973 0.91324 0.98274 1.19799 0.94878 0.95286 0.98960 1.20986 0.99437 0.93023 1.00031 1.21083 0.96331 0.95846 0.99963 1.20003 0.94473 0.95818 0.97552 1.20336 1.02295 0.89551 0.98117 1.21641 1.02653 0.93438 0.99706 1.20527 0.80331 0.87859 0.83178 1.90654 1.41190 1.78292 1.33730 1.46488 1.55627 1.12283 1.21818 1.19102 0.96219 0.74472 0.97479 1.21281 1.36851 0.94540 1.05441 0.91845 1.24965 0.94902 0.97297 0.96937 1.69986 1.39086 1.09255 1.33972 0.86357 0.78589 0.79568 0.82372 1.19639 1.20799 1.20794 1.21093 0.99769 0.92910 0.99543 1.20995 0.96269 0.95730 1.00248 0.91966 0.92959 0.92829 0.91133 0.92689 0.92724 0.92684 0.91151 0.91172 0.86420 0.86039 0.90254 0.90253 0.89436 0.89442 0.77702 0.95581 0.95572 0.92512 0.86039 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.76 37.16 0.33 -0.71 16 2 C -0.09 -0.62 2.91 -90.62 -0.26 -0.88 16 3 C -0.15 -0.82 9.19 37.16 0.34 -0.48 16 4 C -0.08 -0.54 4.84 -27.89 -0.14 -0.67 16 5 C -0.09 -0.82 4.71 -104.63 -0.49 -1.31 16 6 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 7 C -0.11 -1.24 9.70 -39.58 -0.38 -1.62 16 8 C -0.08 -0.92 5.13 -104.63 -0.54 -1.45 16 9 C -0.07 -0.88 4.63 -27.88 -0.13 -1.01 16 10 C -0.13 -1.89 5.68 -27.88 -0.16 -2.05 16 11 C 0.50 9.88 7.83 -10.98 -0.09 9.79 16 12 O -0.56 -13.45 15.98 5.56 0.09 -13.36 16 13 N -0.71 -15.18 5.55 -61.48 -0.34 -15.52 16 14 C 0.25 6.66 5.43 -5.20 -0.03 6.63 16 15 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 16 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 19 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 24 C -0.11 -1.09 7.96 -39.58 -0.32 -1.41 16 25 H 0.06 0.50 6.27 -51.93 -0.33 0.17 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.08 1.13 8.04 -51.92 -0.42 0.71 16 37 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.39 7.11 8.32 -40.82 -0.34 6.77 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.12 0.94 8.04 -52.49 -0.42 0.52 16 LS Contribution 372.98 15.07 5.62 5.62 Total: -1.00 -32.01 372.98 -9.76 -41.76 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.79 Total: 2.94 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -3.05 Total: -11.85 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.40 Total: -41.06 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.01 -9.76 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427647373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.220 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds