Wall clock time and date at job start Tue Mar 31 2020 06:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 C 1.50692 * 109.47279 * 294.99874 * 4 2 1 6 6 C 1.38237 * 120.00003 * 269.72808 * 5 4 2 7 7 C 1.38243 * 119.99821 * 179.76797 * 6 5 4 8 8 C 1.38231 * 120.00097 * 0.48211 * 7 6 5 9 9 C 1.50695 * 120.00366 * 179.76993 * 8 7 6 10 10 C 1.53005 * 109.47270 * 270.02625 * 9 8 7 11 11 C 1.50696 * 109.46937 * 179.97438 * 10 9 8 12 12 O 1.21281 * 120.00533 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99954 * 179.97438 * 11 10 9 14 14 C 1.46492 * 120.00152 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46980 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00252 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99867 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00120 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99894 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47100 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47291 * 120.00091 * 19 17 15 22 22 H 1.48498 * 109.47165 * 239.99701 * 19 17 15 23 23 C 1.38240 * 120.00131 * 359.78966 * 8 7 6 24 24 C 1.38236 * 120.00003 * 90.00426 * 5 4 2 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 28 28 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 29 29 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 30 30 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 32 32 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 33 33 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 34 34 H 1.07996 * 119.99877 * 359.97438 * 6 5 4 35 35 H 1.07994 * 119.99602 * 180.25387 * 7 6 5 36 36 H 1.09010 * 109.46825 * 30.02030 * 9 8 7 37 37 H 1.09001 * 109.47297 * 150.01918 * 9 8 7 38 38 H 1.09002 * 109.46412 * 299.99446 * 10 9 8 39 39 H 1.08991 * 109.46814 * 59.99228 * 10 9 8 40 40 H 0.97000 * 119.99126 * 0.02562 * 13 11 10 41 41 H 1.08998 * 109.47778 * 300.00271 * 14 13 11 42 42 H 1.09000 * 109.46812 * 60.00634 * 14 13 11 43 43 H 0.97000 * 120.00352 * 180.02562 * 18 17 15 44 44 H 1.07997 * 120.00544 * 179.97438 * 23 8 7 45 45 H 1.08001 * 120.00265 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 -2.1732 -1.1889 6 6 2.4841 -3.0974 -0.6001 7 6 2.1163 -4.4287 -0.5405 8 6 0.9103 -4.8373 -1.0786 9 6 0.5116 -6.2893 -1.0183 10 6 1.0217 -7.0106 -2.2675 11 6 0.6235 -8.4627 -2.2068 12 8 -0.0058 -8.8799 -1.2577 13 7 0.9668 -9.2980 -3.2074 14 6 0.5802 -10.7097 -3.1482 15 6 1.0825 -11.4201 -4.3787 16 1 1.6349 -10.8747 -5.1295 17 6 0.8369 -12.7665 -4.5459 18 7 0.1639 -13.4307 -3.6319 19 14 1.4602 -13.6472 -6.0708 20 1 2.1835 -12.6832 -6.9383 21 1 2.3825 -14.7397 -5.6693 22 1 0.3106 -14.2192 -6.8167 23 6 0.0702 -3.9140 -1.6725 24 6 0.4357 -2.5819 -1.7275 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6055 -0.2617 -2.1370 33 1 3.1264 -0.6442 -1.2952 34 1 3.4283 -2.7789 -0.1837 35 1 2.7728 -5.1500 -0.0768 36 1 0.9463 -6.7488 -0.1305 37 1 -0.5747 -6.3662 -0.9724 38 1 0.5870 -6.5510 -3.1552 39 1 2.1079 -6.9336 -2.3134 40 1 1.4705 -8.9644 -3.9663 41 1 1.0158 -11.1689 -2.2608 42 1 -0.5060 -10.7873 -3.1015 43 1 -0.0086 -14.3780 -3.7494 44 1 -0.8718 -4.2332 -2.0932 45 1 -0.2208 -1.8605 -2.1912 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427647373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:44 Heat of formation + Delta-G solvation = -75.710612 kcal Electronic energy + Delta-G solvation = -21529.686863 eV Core-core repulsion = 18316.392417 eV Total energy + Delta-G solvation = -3213.294446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82634 -40.24533 -37.38392 -36.17730 -34.67866 -34.32697 -31.78725 -31.43215 -29.43144 -27.97998 -27.47620 -25.22231 -23.85689 -23.55177 -21.72591 -21.20201 -20.75978 -18.94990 -17.65423 -17.09826 -16.95097 -16.78667 -16.19419 -16.07301 -15.86907 -15.43135 -15.15536 -14.67441 -14.57913 -14.24310 -14.15478 -14.03721 -13.74015 -13.57315 -13.18560 -12.99168 -12.90128 -12.76131 -12.72748 -12.62470 -12.24145 -12.21934 -12.10491 -11.72522 -11.63410 -11.47256 -11.46756 -11.43895 -10.82684 -10.77609 -9.83132 -9.74319 -9.32987 -8.30331 -6.47087 0.45657 0.56582 1.42572 1.43758 1.57390 1.77696 2.32144 2.59563 2.90451 3.04462 3.76595 3.90193 3.91566 4.05299 4.09426 4.13370 4.22651 4.26435 4.37841 4.43097 4.59169 4.64143 4.70082 4.81460 4.83696 4.87310 4.97980 4.99168 5.09121 5.09718 5.11794 5.15223 5.22973 5.24318 5.27554 5.38095 5.46046 5.48859 5.50793 5.59827 5.69319 5.79961 5.80957 5.84211 6.18631 6.64532 6.90984 7.22463 7.50020 8.82125 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.044150 B = 0.002118 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.046924 B =13213.998626 C =13438.145099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.073 4.073 5 C -0.087 4.087 6 C -0.122 4.122 7 C -0.123 4.123 8 C -0.091 4.091 9 C -0.059 4.059 10 C -0.116 4.116 11 C 0.493 3.507 12 O -0.605 6.605 13 N -0.710 5.710 14 C 0.264 3.736 15 C -0.556 4.556 16 H 0.084 0.916 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.986 3.014 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.124 4.124 24 C -0.117 4.117 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.409 0.591 41 H -0.013 1.013 42 H -0.013 1.013 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.566 30.257 2.940 30.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.110 4.110 5 C -0.087 4.087 6 C -0.140 4.140 7 C -0.141 4.141 8 C -0.092 4.092 9 C -0.096 4.096 10 C -0.156 4.156 11 C 0.281 3.719 12 O -0.488 6.488 13 N -0.359 5.359 14 C 0.141 3.859 15 C -0.594 4.594 16 H 0.102 0.898 17 C -0.198 4.198 18 N -0.570 5.570 19 Si 0.809 3.191 20 H -0.176 1.176 21 H -0.204 1.204 22 H -0.204 1.204 23 C -0.142 4.142 24 C -0.135 4.135 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.153 0.847 35 H 0.144 0.856 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.244 0.756 41 H 0.005 0.995 42 H 0.005 0.995 43 H 0.078 0.922 44 H 0.144 0.856 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.060 29.787 3.637 30.432 hybrid contribution 0.036 -1.120 -0.549 1.248 sum 5.096 28.667 3.088 29.279 Atomic orbital electron populations 1.21920 0.95363 1.01598 1.01918 1.21063 0.95969 0.96376 0.97450 1.21830 1.01221 0.95074 1.02122 1.20694 1.01617 0.89915 0.98746 1.20089 0.94462 0.96359 0.97803 1.21225 1.00274 0.92587 0.99878 1.21215 0.96181 0.96691 1.00043 1.19816 0.95415 0.94600 0.99324 1.20203 1.01272 0.90974 0.97199 1.21611 1.04288 0.88520 1.01164 1.21603 0.78738 0.89946 0.81631 1.90632 1.43092 1.79616 1.35445 1.46252 1.56130 1.10339 1.23198 1.18550 0.93503 0.77620 0.96247 1.21667 1.36925 0.95130 1.05686 0.89777 1.26097 0.94784 0.98305 1.00568 1.70146 1.40504 1.09807 1.36529 0.85087 0.77997 0.78205 0.77771 1.17617 1.20429 1.20417 1.21227 0.99901 0.93432 0.99650 1.21205 0.96691 0.95491 1.00064 0.93265 0.92783 0.92096 0.91956 0.92523 0.92221 0.92196 0.90349 0.90282 0.84699 0.85604 0.91681 0.91664 0.86856 0.86874 0.75552 0.99540 0.99530 0.92242 0.85595 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.76 71.98 0.63 -1.19 16 2 C -0.09 -1.02 2.91 -10.79 -0.03 -1.05 16 3 C -0.15 -1.28 9.19 71.98 0.66 -0.62 16 4 C -0.07 -0.85 4.84 29.84 0.14 -0.70 16 5 C -0.09 -1.41 4.71 -19.87 -0.09 -1.50 16 6 C -0.12 -2.12 9.70 22.27 0.22 -1.90 16 7 C -0.12 -2.51 9.70 22.27 0.22 -2.29 16 8 C -0.09 -2.05 5.13 -19.87 -0.10 -2.15 16 9 C -0.06 -1.57 4.63 29.85 0.14 -1.43 16 10 C -0.12 -3.13 5.68 29.85 0.17 -2.96 16 11 C 0.49 19.89 7.83 87.65 0.69 20.58 16 12 O -0.61 -30.44 15.98 -3.03 -0.05 -30.49 16 13 N -0.71 -30.45 5.55 -466.80 -2.59 -33.04 16 14 C 0.26 14.75 5.43 85.64 0.46 15.21 16 15 C -0.56 -30.63 9.28 25.60 0.24 -30.39 16 16 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 17 C 0.00 0.11 5.46 84.66 0.46 0.57 16 18 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 19 Si 0.99 42.59 29.54 68.60 2.03 44.62 16 20 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 23 C -0.12 -2.51 9.70 22.27 0.22 -2.30 16 24 C -0.12 -2.01 7.96 22.27 0.18 -1.83 16 25 H 0.05 0.72 6.27 -2.39 -0.01 0.71 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.82 8.09 -2.38 -0.02 0.80 16 33 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 34 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.06 1.90 8.04 -2.38 -0.02 1.88 16 37 H 0.06 1.90 8.04 -2.39 -0.02 1.88 16 38 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.41 14.40 8.32 -92.71 -0.77 13.63 16 41 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 42 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 43 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 44 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 45 H 0.13 1.82 8.04 -2.91 -0.02 1.80 16 Total: -1.00 -71.64 372.98 4.04 -67.60 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.18 Total: 21.70 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 4.19 Total: -13.96 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -2.30 Total: -89.47 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.05 Total: -30.49 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -71.64 4.04 -67.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427647373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.110 kcal (2) G-P(sol) polarization free energy of solvation -71.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds