Wall clock time and date at job start Tue Mar 31 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99622 * 2 1 4 4 N 1.46901 * 109.47280 * 124.74655 * 3 2 1 5 5 C 1.46904 * 111.00078 * 199.47622 * 4 3 2 6 6 C 1.50699 * 109.47175 * 66.04469 * 5 4 3 7 7 H 1.08001 * 120.00206 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99784 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00304 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00001 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47211 * 89.99858 * 10 8 6 12 12 H 1.48495 * 109.47400 * 210.00236 * 10 8 6 13 13 H 1.48509 * 109.47173 * 329.99954 * 10 8 6 14 14 C 1.46900 * 111.00129 * 75.51762 * 4 3 2 15 15 C 1.53001 * 109.47141 * 199.58585 * 14 4 3 16 16 O 1.42899 * 109.46992 * 65.69986 * 15 14 4 17 17 C 1.35900 * 116.99609 * 180.18598 * 16 15 14 18 18 C 1.38749 * 120.05688 * 359.72869 * 17 16 15 19 19 C 1.38123 * 119.94117 * 179.70150 * 18 17 16 20 20 C 1.38291 * 120.05611 * 0.58930 * 19 18 17 21 21 C 1.38238 * 120.11173 * 359.68326 * 20 19 18 22 22 C 1.50700 * 119.97432 * 179.97438 * 21 20 19 23 23 C 1.53002 * 109.46984 * 270.02355 * 22 21 20 24 24 C 1.38169 * 120.05528 * 0.02562 * 21 20 19 25 25 H 1.08002 * 119.99796 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.00519 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.00519 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47260 * 4.74454 * 3 2 1 29 29 H 1.09005 * 109.47120 * 244.74829 * 3 2 1 30 30 H 1.08996 * 109.46914 * 186.04661 * 5 4 3 31 31 H 1.08998 * 109.46854 * 306.04081 * 5 4 3 32 32 H 0.97003 * 120.00188 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.46640 * 79.58728 * 14 4 3 34 34 H 1.08999 * 109.46884 * 319.59244 * 14 4 3 35 35 H 1.09002 * 109.46548 * 185.70115 * 15 14 4 36 36 H 1.09006 * 109.47071 * 305.69813 * 15 14 4 37 37 H 1.07990 * 120.03041 * 359.97438 * 18 17 16 38 38 H 1.08001 * 119.97666 * 180.29738 * 19 18 17 39 39 H 1.07997 * 119.94311 * 179.70469 * 20 19 18 40 40 H 1.08997 * 109.47006 * 30.02101 * 22 21 20 41 41 H 1.08997 * 109.47411 * 150.02366 * 22 21 20 42 42 H 1.08999 * 109.47479 * 300.00006 * 23 22 21 43 43 H 1.08998 * 109.47129 * 60.00328 * 23 22 21 44 44 H 1.09005 * 109.46905 * 180.02562 * 23 22 21 45 45 H 1.08004 * 120.02790 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9919 1.3346 1.1380 5 6 3.3959 2.7116 1.4523 6 6 2.2005 3.4859 1.9447 7 1 1.2369 3.0035 2.0166 8 6 2.3368 4.8104 2.3025 9 7 3.5099 5.3983 2.2136 10 14 0.8549 5.7704 2.9122 11 1 0.7535 5.6399 4.3880 12 1 1.0102 7.2025 2.5515 13 1 -0.3773 5.2321 2.2818 14 6 4.1643 0.4871 0.8830 15 6 4.8454 0.1460 2.2099 16 8 3.9732 -0.6668 2.9978 17 6 4.4281 -1.0573 4.2174 18 6 5.6904 -0.6709 4.6447 19 6 6.1479 -1.0640 5.8873 20 6 5.3540 -1.8521 6.7002 21 6 4.0982 -2.2432 6.2744 22 6 3.2359 -3.1025 7.1626 23 6 3.5145 -4.5783 6.8705 24 6 3.6335 -1.8476 5.0348 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5401 0.9352 -0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3581 2.1318 0.0850 29 1 2.6248 1.4006 -0.9295 30 1 4.1635 2.6973 2.2260 31 1 3.7928 3.1874 0.5556 32 1 3.6058 6.3300 2.4656 33 1 4.8656 1.0206 0.2413 34 1 3.8479 -0.4321 0.3901 35 1 5.7702 -0.3969 2.0146 36 1 5.0710 1.0658 2.7495 37 1 6.3128 -0.0596 4.0082 38 1 7.1284 -0.7595 6.2224 39 1 5.7154 -2.1624 7.6694 40 1 3.4642 -2.8895 8.2069 41 1 2.1854 -2.8859 6.9688 42 1 3.2863 -4.7915 5.8262 43 1 4.5650 -4.7950 7.0644 44 1 2.8904 -5.1999 7.5126 45 1 2.6522 -2.1530 4.7028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428853132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:52 Heat of formation + Delta-G solvation = 0.404867 kcal Electronic energy + Delta-G solvation = -22719.222654 eV Core-core repulsion = 19509.228823 eV Total energy + Delta-G solvation = -3209.993831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.90657 -37.89066 -36.72689 -33.78946 -33.18256 -32.43633 -30.54135 -29.18840 -28.68827 -27.00016 -24.62936 -23.91814 -22.64217 -22.29797 -20.87347 -19.94748 -19.00287 -17.56535 -16.49696 -15.93621 -15.81698 -15.60697 -14.92912 -14.74221 -14.52152 -14.00328 -13.89273 -13.72441 -13.44595 -13.01682 -13.00395 -12.64789 -12.25468 -12.13225 -11.94147 -11.80899 -11.51983 -11.40258 -11.25513 -11.02290 -10.89521 -10.75958 -10.67572 -10.53412 -10.34772 -10.15784 -9.76974 -9.22079 -8.85471 -8.65530 -8.44090 -7.89238 -7.23892 -6.03779 -4.04265 1.47956 1.67144 2.80320 3.32761 3.38628 3.42342 3.58175 3.93300 4.42916 4.75901 4.88663 4.91886 5.06541 5.25297 5.27601 5.31887 5.37597 5.39952 5.40751 5.54303 5.58431 5.66079 5.67849 5.73231 5.80641 5.82382 5.92142 5.98677 6.09139 6.14585 6.21512 6.23146 6.33090 6.53334 6.57265 6.61896 6.73208 6.98559 7.10141 7.20762 7.28664 7.34766 7.77537 7.84073 8.06056 8.18276 8.52883 9.03563 9.60008 11.07198 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.004153 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.242937 B = 6740.350897 C = 7418.065113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C 0.084 3.916 4 N -0.525 5.525 5 C 0.191 3.809 6 C -0.505 4.505 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.054 3.946 15 C 0.069 3.931 16 O -0.292 6.292 17 C 0.148 3.852 18 C -0.217 4.217 19 C -0.078 4.078 20 C -0.168 4.168 21 C -0.047 4.047 22 C -0.084 4.084 23 C -0.145 4.145 24 C -0.155 4.155 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.028 0.972 30 H 0.030 0.970 31 H -0.009 1.009 32 H 0.261 0.739 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.154 -16.302 4.093 17.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.145 4.145 3 C -0.044 4.044 4 N -0.250 5.250 5 C 0.066 3.934 6 C -0.544 4.544 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.075 4.075 15 C -0.007 4.007 16 O -0.204 6.204 17 C 0.101 3.899 18 C -0.236 4.236 19 C -0.096 4.096 20 C -0.187 4.187 21 C -0.047 4.047 22 C -0.122 4.122 23 C -0.203 4.203 24 C -0.173 4.173 25 H 0.106 0.894 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.009 0.991 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.821 -16.332 4.416 17.152 hybrid contribution 0.058 1.173 -0.276 1.206 sum 2.879 -15.159 4.140 15.976 Atomic orbital electron populations 1.23670 0.95979 1.01104 1.03350 1.22958 0.95843 0.98407 0.97325 1.21177 0.96098 0.95684 0.91408 1.62091 1.12749 1.13536 1.36599 1.19802 0.96826 0.81534 0.95227 1.21149 0.95536 0.94748 1.42919 0.91769 1.24969 0.96012 0.97687 0.95851 1.69950 1.22879 1.12269 1.48836 0.86520 0.82931 0.78895 0.79231 1.20615 1.21338 1.19804 1.22090 0.93806 0.98094 0.93515 1.22925 0.91468 0.93926 0.92370 1.86195 1.43946 1.65102 1.25144 1.19100 0.91986 0.92913 0.85886 1.21285 0.96779 1.06425 0.99083 1.20867 0.99182 0.96240 0.93302 1.20801 0.94891 1.02469 1.00502 1.19605 0.94635 0.96598 0.93870 1.20537 0.99077 0.94183 0.98377 1.21738 1.01637 0.94990 1.01908 1.20258 1.00728 1.02313 0.94041 0.89357 0.88697 0.88404 0.88970 0.95430 0.95163 0.99136 0.92953 0.93392 0.91082 0.92814 0.91173 0.85639 0.86222 0.86521 0.91025 0.90848 0.92445 0.92640 0.92543 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.18 14.32 29.01 0.42 -2.76 16 2 C -0.13 -2.14 9.32 -36.03 -0.34 -2.48 16 3 C 0.08 1.64 5.24 -4.98 -0.03 1.62 16 4 N -0.53 -11.28 4.31 -237.51 -1.02 -12.30 16 5 C 0.19 4.90 4.55 -4.97 -0.02 4.87 16 6 C -0.50 -14.18 8.24 -34.44 -0.28 -14.46 16 7 H 0.06 1.81 7.31 -52.49 -0.38 1.43 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 10 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.05 0.95 5.19 -3.82 -0.02 0.93 16 15 C 0.07 1.16 4.93 37.16 0.18 1.34 16 16 O -0.29 -5.34 10.09 -19.42 -0.20 -5.54 16 17 C 0.15 2.47 6.69 -39.22 -0.26 2.21 16 18 C -0.22 -3.27 9.04 -39.43 -0.36 -3.62 16 19 C -0.08 -1.02 10.04 -39.60 -0.40 -1.42 16 20 C -0.17 -2.10 9.70 -39.56 -0.38 -2.49 16 21 C -0.05 -0.61 5.13 -104.65 -0.54 -1.15 16 22 C -0.08 -0.85 6.06 -27.88 -0.17 -1.02 16 23 C -0.15 -1.27 9.89 37.16 0.37 -0.90 16 24 C -0.15 -2.35 9.64 -39.43 -0.38 -2.73 16 25 H 0.09 1.19 8.06 -52.49 -0.42 0.76 16 26 H 0.09 1.51 7.84 -52.49 -0.41 1.10 16 27 H 0.10 1.53 7.27 -52.49 -0.38 1.15 16 28 H 0.09 2.00 6.23 -51.93 -0.32 1.67 16 29 H 0.03 0.51 8.00 -51.93 -0.42 0.09 16 30 H 0.03 0.83 6.55 -51.93 -0.34 0.49 16 31 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 33 H 0.05 0.81 8.00 -51.93 -0.42 0.39 16 34 H 0.07 1.13 6.80 -51.93 -0.35 0.77 16 35 H 0.05 0.74 7.66 -51.93 -0.40 0.35 16 36 H 0.07 1.32 6.16 -51.93 -0.32 1.00 16 37 H 0.13 1.77 6.30 -52.49 -0.33 1.44 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 41 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -30.60 369.35 -9.67 -40.27 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.43 Total: 1.61 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -2.31 Total: -20.57 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: -0.29 Total: -38.16 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.20 Total: -5.54 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.60 -9.67 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428853132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.679 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds