Wall clock time and date at job start Tue Mar 31 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99622 * 2 1 4 4 N 1.46901 * 109.47280 * 124.74655 * 3 2 1 5 5 C 1.46904 * 111.00078 * 199.47622 * 4 3 2 6 6 C 1.50699 * 109.47175 * 66.04469 * 5 4 3 7 7 H 1.08001 * 120.00206 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99784 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00304 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00001 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47211 * 89.99858 * 10 8 6 12 12 H 1.48495 * 109.47400 * 210.00236 * 10 8 6 13 13 H 1.48509 * 109.47173 * 329.99954 * 10 8 6 14 14 C 1.46900 * 111.00129 * 75.51762 * 4 3 2 15 15 C 1.53001 * 109.47141 * 199.58585 * 14 4 3 16 16 O 1.42899 * 109.46992 * 65.69986 * 15 14 4 17 17 C 1.35900 * 116.99609 * 180.18598 * 16 15 14 18 18 C 1.38749 * 120.05688 * 359.72869 * 17 16 15 19 19 C 1.38123 * 119.94117 * 179.70150 * 18 17 16 20 20 C 1.38291 * 120.05611 * 0.58930 * 19 18 17 21 21 C 1.38238 * 120.11173 * 359.68326 * 20 19 18 22 22 C 1.50700 * 119.97432 * 179.97438 * 21 20 19 23 23 C 1.53002 * 109.46984 * 270.02355 * 22 21 20 24 24 C 1.38169 * 120.05528 * 0.02562 * 21 20 19 25 25 H 1.08002 * 119.99796 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.00519 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.00519 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47260 * 4.74454 * 3 2 1 29 29 H 1.09005 * 109.47120 * 244.74829 * 3 2 1 30 30 H 1.08996 * 109.46914 * 186.04661 * 5 4 3 31 31 H 1.08998 * 109.46854 * 306.04081 * 5 4 3 32 32 H 0.97003 * 120.00188 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.46640 * 79.58728 * 14 4 3 34 34 H 1.08999 * 109.46884 * 319.59244 * 14 4 3 35 35 H 1.09002 * 109.46548 * 185.70115 * 15 14 4 36 36 H 1.09006 * 109.47071 * 305.69813 * 15 14 4 37 37 H 1.07990 * 120.03041 * 359.97438 * 18 17 16 38 38 H 1.08001 * 119.97666 * 180.29738 * 19 18 17 39 39 H 1.07997 * 119.94311 * 179.70469 * 20 19 18 40 40 H 1.08997 * 109.47006 * 30.02101 * 22 21 20 41 41 H 1.08997 * 109.47411 * 150.02366 * 22 21 20 42 42 H 1.08999 * 109.47479 * 300.00006 * 23 22 21 43 43 H 1.08998 * 109.47129 * 60.00328 * 23 22 21 44 44 H 1.09005 * 109.46905 * 180.02562 * 23 22 21 45 45 H 1.08004 * 120.02790 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9919 1.3346 1.1380 5 6 3.3959 2.7116 1.4523 6 6 2.2005 3.4859 1.9447 7 1 1.2369 3.0035 2.0166 8 6 2.3368 4.8104 2.3025 9 7 3.5099 5.3983 2.2136 10 14 0.8549 5.7704 2.9122 11 1 0.7535 5.6399 4.3880 12 1 1.0102 7.2025 2.5515 13 1 -0.3773 5.2321 2.2818 14 6 4.1643 0.4871 0.8830 15 6 4.8454 0.1460 2.2099 16 8 3.9732 -0.6668 2.9978 17 6 4.4281 -1.0573 4.2174 18 6 5.6904 -0.6709 4.6447 19 6 6.1479 -1.0640 5.8873 20 6 5.3540 -1.8521 6.7002 21 6 4.0982 -2.2432 6.2744 22 6 3.2359 -3.1025 7.1626 23 6 3.5145 -4.5783 6.8705 24 6 3.6335 -1.8476 5.0348 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5401 0.9352 -0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3581 2.1318 0.0850 29 1 2.6248 1.4006 -0.9295 30 1 4.1635 2.6973 2.2260 31 1 3.7928 3.1874 0.5556 32 1 3.6058 6.3300 2.4656 33 1 4.8656 1.0206 0.2413 34 1 3.8479 -0.4321 0.3901 35 1 5.7702 -0.3969 2.0146 36 1 5.0710 1.0658 2.7495 37 1 6.3128 -0.0596 4.0082 38 1 7.1284 -0.7595 6.2224 39 1 5.7154 -2.1624 7.6694 40 1 3.4642 -2.8895 8.2069 41 1 2.1854 -2.8859 6.9688 42 1 3.2863 -4.7915 5.8262 43 1 4.5650 -4.7950 7.0644 44 1 2.8904 -5.1999 7.5126 45 1 2.6522 -2.1530 4.7028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428853132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:51 Heat of formation + Delta-G solvation = -16.171064 kcal Electronic energy + Delta-G solvation = -22719.941440 eV Core-core repulsion = 19509.228823 eV Total energy + Delta-G solvation = -3210.712618 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.07866 -39.22939 -38.17564 -34.98696 -34.70883 -34.13672 -31.82564 -30.41440 -29.87016 -28.84721 -26.18865 -25.14780 -24.10244 -23.38691 -22.29872 -21.25362 -20.40390 -18.81192 -18.50241 -17.29520 -17.01597 -16.87143 -16.63870 -16.20176 -15.65657 -15.42343 -15.35958 -14.91301 -14.50685 -14.36438 -14.09791 -14.04139 -13.79618 -13.63074 -13.32684 -13.22994 -12.80808 -12.74942 -12.67282 -12.46204 -12.40404 -12.17274 -11.95621 -11.81045 -11.76938 -11.58654 -11.40082 -11.23064 -10.62057 -10.22642 -9.71753 -9.05294 -8.96644 -8.22201 -6.30748 0.40661 0.56526 1.38055 1.39633 1.48086 1.50655 2.33573 2.39048 2.84994 3.10440 3.33639 3.82891 3.90031 4.00330 4.09539 4.14959 4.19631 4.31105 4.34143 4.42636 4.43393 4.49979 4.54373 4.58458 4.64395 4.68954 4.80651 4.84102 4.93205 5.03912 5.11473 5.11856 5.19523 5.22010 5.23398 5.41074 5.44944 5.54376 5.63838 5.70960 5.77865 5.94480 6.01878 6.05481 6.34146 6.54995 6.65843 6.84684 7.38349 8.88723 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.004153 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.242937 B = 6740.350897 C = 7418.065113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.141 4.141 3 C 0.085 3.915 4 N -0.536 5.536 5 C 0.209 3.791 6 C -0.521 4.521 7 H 0.057 0.943 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.276 1.276 12 H -0.279 1.279 13 H -0.265 1.265 14 C 0.053 3.947 15 C 0.075 3.925 16 O -0.314 6.314 17 C 0.116 3.884 18 C -0.233 4.233 19 C -0.080 4.080 20 C -0.166 4.166 21 C -0.047 4.047 22 C -0.084 4.084 23 C -0.142 4.142 24 C -0.173 4.173 25 H 0.118 0.882 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.006 0.994 31 H -0.034 1.034 32 H 0.264 0.736 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.126 0.874 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.638 -17.955 5.385 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.159 4.159 3 C -0.042 4.042 4 N -0.260 5.260 5 C 0.083 3.917 6 C -0.559 4.559 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.202 1.202 12 H -0.205 1.205 13 H -0.189 1.189 14 C -0.075 4.075 15 C -0.001 4.001 16 O -0.227 6.227 17 C 0.071 3.929 18 C -0.251 4.251 19 C -0.098 4.098 20 C -0.184 4.184 21 C -0.047 4.047 22 C -0.121 4.121 23 C -0.199 4.199 24 C -0.192 4.192 25 H 0.136 0.864 26 H 0.105 0.895 27 H 0.133 0.867 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.024 0.976 31 H -0.017 1.017 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.144 0.856 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.302 -18.009 5.701 19.030 hybrid contribution 0.234 1.618 -0.636 1.755 sum 2.536 -16.390 5.065 17.342 Atomic orbital electron populations 1.23889 0.95619 1.02175 1.01024 1.22857 0.96250 0.97431 0.99387 1.21133 0.95496 0.96521 0.91041 1.62015 1.14569 1.11287 1.38164 1.19411 0.95325 0.83800 0.93209 1.21423 0.95923 0.95469 1.43092 0.92463 1.25825 0.98909 0.98682 0.95888 1.70064 1.24882 1.12701 1.49630 0.85482 0.79538 0.77597 0.78645 1.20180 1.20451 1.18912 1.22204 0.92722 0.98195 0.94396 1.22841 0.92530 0.93202 0.91506 1.86129 1.44875 1.65513 1.26204 1.19425 0.93219 0.94447 0.85842 1.21445 0.96467 1.06970 1.00265 1.21239 1.00407 0.95709 0.92461 1.21215 0.94380 1.01327 1.01470 1.19991 0.95286 0.96152 0.93248 1.20618 0.98447 0.94450 0.98609 1.21715 1.02297 0.94186 1.01724 1.20452 1.00752 1.02897 0.95059 0.86391 0.89463 0.86708 0.91802 0.94649 0.97551 1.01676 0.92698 0.92690 0.88763 0.89650 0.94016 0.85571 0.83599 0.83465 0.89260 0.90954 0.93436 0.92233 0.90731 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.63 14.32 67.78 0.97 -4.66 16 2 C -0.14 -4.63 9.32 25.64 0.24 -4.39 16 3 C 0.09 3.40 5.24 85.56 0.45 3.85 16 4 N -0.54 -23.69 4.31 -905.35 -3.90 -27.59 16 5 C 0.21 11.22 4.55 85.56 0.39 11.61 16 6 C -0.52 -30.21 8.24 25.60 0.21 -30.00 16 7 H 0.06 3.33 7.31 -2.91 -0.02 3.31 16 8 C 0.01 0.29 5.46 84.65 0.46 0.75 16 9 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 10 Si 0.96 45.28 29.54 68.60 2.03 47.30 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 14 C 0.05 1.88 5.19 86.30 0.45 2.33 16 15 C 0.07 2.58 4.93 71.98 0.36 2.94 16 16 O -0.31 -11.80 10.09 -92.42 -0.93 -12.73 16 17 C 0.12 3.96 6.69 22.51 0.15 4.12 16 18 C -0.23 -7.03 9.04 22.36 0.20 -6.83 16 19 C -0.08 -1.99 10.04 22.26 0.22 -1.76 16 20 C -0.17 -3.76 9.70 22.28 0.22 -3.54 16 21 C -0.05 -1.15 5.13 -19.88 -0.10 -1.25 16 22 C -0.08 -1.51 6.06 29.85 0.18 -1.33 16 23 C -0.14 -2.15 9.89 71.98 0.71 -1.43 16 24 C -0.17 -5.27 9.64 22.37 0.22 -5.06 16 25 H 0.12 2.82 8.06 -2.91 -0.02 2.79 16 26 H 0.09 2.72 7.84 -2.91 -0.02 2.70 16 27 H 0.12 3.39 7.27 -2.91 -0.02 3.37 16 28 H 0.06 2.87 6.23 -2.39 -0.01 2.85 16 29 H 0.04 1.32 8.00 -2.38 -0.02 1.31 16 30 H 0.01 0.37 6.55 -2.39 -0.02 0.36 16 31 H -0.03 -1.98 8.12 -2.39 -0.02 -2.00 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.28 16 33 H 0.06 1.88 8.00 -2.39 -0.02 1.86 16 34 H 0.09 2.90 6.80 -2.39 -0.02 2.88 16 35 H 0.09 2.35 7.66 -2.39 -0.02 2.34 16 36 H 0.04 1.66 6.16 -2.38 -0.01 1.65 16 37 H 0.13 3.65 6.30 -2.92 -0.02 3.63 16 38 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 40 H 0.09 1.30 8.08 -2.39 -0.02 1.28 16 41 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -67.75 369.35 3.74 -64.01 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.94 Total: 19.85 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 5.32 Total: -34.66 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -3.61 Total: -83.78 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.93 Total: -12.73 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -67.75 3.74 -64.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428853132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.840 kcal (2) G-P(sol) polarization free energy of solvation -67.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds