Wall clock time and date at job start Tue Mar 31 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34515 * 125.79110 * 2 1 4 4 C 1.41379 * 106.84549 * 180.02562 * 3 2 1 5 5 C 1.34517 * 106.83706 * 0.02562 * 4 3 2 6 6 C 1.50700 * 125.78991 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46903 * 20.00228 * 6 5 4 8 8 N 1.46894 * 109.47441 * 139.99992 * 6 5 4 9 9 C 1.46896 * 111.00652 * 205.00192 * 8 6 5 10 10 C 1.53002 * 109.47571 * 185.42122 * 9 8 6 11 11 C 1.50702 * 115.54839 * 39.52632 * 10 9 8 12 12 H 1.07995 * 119.99666 * 265.10929 * 11 10 9 13 13 C 1.37871 * 120.00007 * 85.11480 * 11 10 9 14 14 N 1.31516 * 119.99973 * 353.46224 * 13 11 10 15 15 Si 1.86799 * 119.99951 * 173.47305 * 13 11 10 16 16 H 1.48500 * 109.47190 * 89.99799 * 15 13 11 17 17 H 1.48500 * 109.47031 * 209.99787 * 15 13 11 18 18 H 1.48501 * 109.46981 * 329.99457 * 15 13 11 19 19 C 1.52996 * 117.49554 * 253.81811 * 10 9 8 20 20 C 1.53000 * 60.00175 * 252.50951 * 19 10 9 21 21 C 1.53001 * 109.47251 * 260.00367 * 6 5 4 22 22 C 1.53777 * 113.61515 * 64.99939 * 21 6 5 23 23 C 1.53783 * 87.08028 * 220.02014 * 22 21 6 24 24 C 1.53781 * 87.17192 * 25.39119 * 23 22 21 25 25 O 1.34297 * 108.42227 * 0.26232 * 5 4 3 26 26 H 1.08992 * 109.47298 * 89.99390 * 1 2 3 27 27 H 1.09000 * 109.46921 * 209.99696 * 1 2 3 28 28 H 1.09002 * 109.46811 * 329.99113 * 1 2 3 29 29 H 1.08006 * 126.57892 * 0.02562 * 3 2 1 30 30 H 1.08000 * 126.58199 * 180.02562 * 4 3 2 31 31 H 1.00906 * 111.00216 * 328.95301 * 8 6 5 32 32 H 1.09003 * 109.46806 * 305.42151 * 9 8 6 33 33 H 1.09001 * 109.46962 * 65.41452 * 9 8 6 34 34 H 0.97002 * 119.99593 * 179.97438 * 14 13 11 35 35 H 1.09003 * 117.50417 * 359.97438 * 19 10 9 36 36 H 1.09003 * 117.49651 * 145.02407 * 19 10 9 37 37 H 1.09000 * 117.50102 * 252.51536 * 20 19 10 38 38 H 1.08995 * 117.51687 * 107.47989 * 20 19 10 39 39 H 1.08999 * 112.84905 * 196.19603 * 21 6 5 40 40 H 1.09000 * 113.61766 * 105.47289 * 22 21 6 41 41 H 1.09006 * 113.69158 * 334.57631 * 22 21 6 42 42 H 1.08998 * 113.61784 * 139.97995 * 23 22 21 43 43 H 1.09002 * 113.61446 * 270.79879 * 23 22 21 44 44 H 1.08995 * 113.61707 * 89.16076 * 24 23 22 45 45 H 1.09003 * 113.61329 * 220.05861 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7705 -1.6378 -0.0030 7 1 5.6506 -1.0992 0.3484 8 7 4.5059 -2.7764 0.8866 9 6 5.7596 -3.3600 1.3822 10 6 5.4503 -4.6203 2.1928 11 6 4.3563 -5.4968 1.6394 12 1 3.3436 -5.3875 1.9981 13 6 4.6486 -6.4381 0.6754 14 7 5.8515 -6.4856 0.1459 15 14 3.3358 -7.6459 0.1211 16 1 2.5845 -7.0699 -1.0230 17 1 3.9783 -8.9173 -0.2984 18 1 2.4010 -7.9108 1.2442 19 6 5.5837 -4.5319 3.7143 20 6 6.6188 -5.3101 2.8996 21 6 5.0183 -2.1477 -1.4241 22 6 5.4260 -1.0427 -2.4127 23 6 4.5264 -1.7430 -3.4447 24 6 3.7326 -2.3092 -2.2555 25 8 2.2925 -1.0894 -0.0073 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.9665 2.1205 0.0004 30 1 4.5212 1.2434 -0.0004 31 1 3.9059 -2.5060 1.6515 32 1 6.3985 -3.6188 0.5378 33 1 6.2714 -2.6364 2.0166 34 1 6.0571 -7.1481 -0.5320 35 1 5.8923 -3.5761 4.1379 36 1 4.8801 -5.1078 4.3155 37 1 6.5961 -6.3980 2.9646 38 1 7.6079 -4.8664 2.7867 39 1 5.6695 -3.0213 -1.4528 40 1 6.4842 -1.0589 -2.6736 41 1 5.0750 -0.0503 -2.1295 42 1 3.9528 -1.0531 -4.0636 43 1 5.0426 -2.5056 -4.0279 44 1 2.9171 -1.6645 -1.9282 45 1 3.4257 -3.3465 -2.3896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430725044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:11 Heat of formation + Delta-G solvation = 60.070244 kcal Electronic energy + Delta-G solvation = -24026.124195 eV Core-core repulsion = 20818.717649 eV Total energy + Delta-G solvation = -3207.406546 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.48238 -38.67094 -36.79332 -34.30949 -32.95312 -31.74982 -31.61617 -28.46504 -25.56652 -25.39487 -25.17634 -24.16808 -21.54899 -21.48150 -21.00040 -19.97075 -19.03173 -18.78931 -16.53991 -16.12321 -15.74851 -15.15387 -14.83993 -14.42667 -14.18391 -14.07226 -13.77599 -13.13201 -12.99464 -12.97715 -12.91102 -12.58363 -12.41346 -11.96836 -11.87588 -11.74243 -11.51853 -11.12899 -11.05598 -10.84223 -10.64361 -10.40945 -10.24018 -10.10305 -9.88828 -9.80717 -9.64017 -9.37574 -8.74621 -8.25113 -8.06057 -7.95189 -7.41976 -5.85347 -3.84562 1.94795 2.78178 3.13249 3.41246 3.47189 3.50633 4.55211 4.62572 4.80303 5.01568 5.09893 5.11150 5.20665 5.26948 5.36691 5.41885 5.43350 5.44649 5.50980 5.68601 5.77906 5.85267 5.97207 6.02301 6.09050 6.12731 6.17611 6.23961 6.28943 6.32365 6.34948 6.54746 6.58279 6.62300 6.67796 6.70588 6.78618 6.97381 6.99528 7.15340 7.42266 7.50510 7.53882 8.04033 8.06810 8.25081 8.63478 9.10931 9.77570 11.25293 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.005524 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.883526 B = 5067.183181 C = 5216.960128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.026 4.026 3 C -0.214 4.214 4 C -0.222 4.222 5 C 0.019 3.981 6 C 0.174 3.826 7 H 0.060 0.940 8 N -0.646 5.646 9 C 0.108 3.892 10 C 0.050 3.950 11 C -0.459 4.459 12 H 0.056 0.944 13 C 0.074 3.926 14 N -0.884 5.884 15 Si 0.883 3.117 16 H -0.282 1.282 17 H -0.291 1.291 18 H -0.277 1.277 19 C -0.219 4.219 20 C -0.157 4.157 21 C -0.089 4.089 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.127 4.127 25 O -0.152 6.152 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.335 0.665 32 H 0.073 0.927 33 H -0.006 1.006 34 H 0.255 0.745 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 14.066 -3.004 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 C -0.234 4.234 4 C -0.242 4.242 5 C -0.032 4.032 6 C 0.064 3.936 7 H 0.077 0.923 8 N -0.276 5.276 9 C -0.021 4.021 10 C 0.049 3.951 11 C -0.497 4.497 12 H 0.074 0.926 13 C -0.127 4.127 14 N -0.522 5.522 15 Si 0.712 3.288 16 H -0.208 1.208 17 H -0.217 1.217 18 H -0.202 1.202 19 C -0.257 4.257 20 C -0.195 4.195 21 C -0.107 4.107 22 C -0.180 4.180 23 C -0.180 4.180 24 C -0.164 4.164 25 O -0.047 6.047 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.153 0.847 32 H 0.091 0.909 33 H 0.012 0.988 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.537 13.196 -3.653 14.424 hybrid contribution -0.192 0.223 0.268 0.398 sum -4.728 13.419 -3.385 14.625 Atomic orbital electron populations 1.20247 0.85651 1.03783 1.03160 1.22422 0.94039 0.84641 1.06532 1.21432 0.92734 0.98956 1.10231 1.21475 0.97943 0.93810 1.10960 1.22506 0.83258 0.93896 1.03523 1.20149 0.88847 0.88821 0.95823 0.92270 1.60283 1.17047 1.27595 1.22660 1.21558 0.89054 0.93925 0.97521 1.18863 0.96312 0.93425 0.86485 1.20123 0.92906 1.15731 1.20951 0.92614 1.24808 0.94931 0.97208 0.95765 1.70002 1.19825 1.35038 1.27376 0.86745 0.82259 0.80815 0.78985 1.20782 1.21677 1.20226 1.23094 1.04535 1.00160 0.97888 1.22479 0.92772 0.98441 1.05825 1.22577 0.98618 0.98470 0.91077 1.23021 0.99294 0.98415 0.97276 1.22784 0.98871 0.99826 0.96533 1.22950 0.96663 1.01585 0.95179 1.84145 1.16086 1.34157 1.70318 0.90476 0.90484 0.89838 0.84121 0.84052 0.84660 0.90903 0.98826 0.93576 0.92178 0.90594 0.90091 0.92198 0.87490 0.91923 0.90453 0.92356 0.90519 0.90277 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.42 36.00 0.38 -0.33 16 2 C -0.03 -0.36 7.32 -35.63 -0.26 -0.62 16 3 C -0.21 -2.81 10.81 -39.70 -0.43 -3.24 16 4 C -0.22 -3.15 9.96 -39.70 -0.40 -3.55 16 5 C 0.02 0.31 3.93 -35.62 -0.14 0.17 16 6 C 0.17 2.98 2.60 -68.87 -0.18 2.80 16 7 H 0.06 0.97 7.85 -51.93 -0.41 0.56 16 8 N -0.65 -13.13 5.59 -107.96 -0.60 -13.73 16 9 C 0.11 2.36 5.53 -3.82 -0.02 2.34 16 10 C 0.05 1.21 1.74 -155.66 -0.27 0.94 16 11 C -0.46 -12.40 8.15 -34.44 -0.28 -12.68 16 12 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 13 C 0.07 2.05 5.39 -17.82 -0.10 1.95 16 14 N -0.88 -24.96 12.93 55.43 0.72 -24.24 16 15 Si 0.88 21.73 29.54 -169.99 -5.02 16.71 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C -0.22 -4.80 9.88 -26.73 -0.26 -5.06 16 20 C -0.16 -3.69 9.46 -26.73 -0.25 -3.94 16 21 C -0.09 -1.51 3.77 -89.72 -0.34 -1.85 16 22 C -0.14 -2.00 7.48 -25.92 -0.19 -2.20 16 23 C -0.14 -2.04 8.08 -25.92 -0.21 -2.25 16 24 C -0.13 -2.15 7.30 -25.83 -0.19 -2.34 16 25 O -0.15 -2.56 9.05 5.71 0.05 -2.51 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 30 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.34 6.81 8.41 -39.29 -0.33 6.48 16 32 H 0.07 1.73 7.38 -51.93 -0.38 1.34 16 33 H -0.01 -0.13 7.94 -51.93 -0.41 -0.54 16 34 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 36 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.11 2.12 7.45 -51.93 -0.39 1.73 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.04 6.88 -51.93 -0.36 0.68 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.08 1.36 5.15 -51.93 -0.27 1.10 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -28.65 363.08 -10.11 -38.77 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -7.58 Total: 9.38 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: -3.15 Total: -29.85 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.11 Total: -37.97 kcal Atomic # 8 Polarization: -2.56 SS G_CDS: 0.05 Total: -2.51 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.65 -10.11 -38.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430725044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.837 kcal (2) G-P(sol) polarization free energy of solvation -28.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds