Wall clock time and date at job start Tue Mar 31 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34515 * 125.79110 * 2 1 4 4 C 1.41379 * 106.84549 * 180.02562 * 3 2 1 5 5 C 1.34517 * 106.83706 * 0.02562 * 4 3 2 6 6 C 1.50700 * 125.78991 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46903 * 20.00228 * 6 5 4 8 8 N 1.46894 * 109.47441 * 139.99992 * 6 5 4 9 9 C 1.46896 * 111.00652 * 205.00192 * 8 6 5 10 10 C 1.53002 * 109.47571 * 185.42122 * 9 8 6 11 11 C 1.50702 * 115.54839 * 39.52632 * 10 9 8 12 12 H 1.07995 * 119.99666 * 265.10929 * 11 10 9 13 13 C 1.37871 * 120.00007 * 85.11480 * 11 10 9 14 14 N 1.31516 * 119.99973 * 353.46224 * 13 11 10 15 15 Si 1.86799 * 119.99951 * 173.47305 * 13 11 10 16 16 H 1.48500 * 109.47190 * 89.99799 * 15 13 11 17 17 H 1.48500 * 109.47031 * 209.99787 * 15 13 11 18 18 H 1.48501 * 109.46981 * 329.99457 * 15 13 11 19 19 C 1.52996 * 117.49554 * 253.81811 * 10 9 8 20 20 C 1.53000 * 60.00175 * 252.50951 * 19 10 9 21 21 C 1.53001 * 109.47251 * 260.00367 * 6 5 4 22 22 C 1.53777 * 113.61515 * 64.99939 * 21 6 5 23 23 C 1.53783 * 87.08028 * 220.02014 * 22 21 6 24 24 C 1.53781 * 87.17192 * 25.39119 * 23 22 21 25 25 O 1.34297 * 108.42227 * 0.26232 * 5 4 3 26 26 H 1.08992 * 109.47298 * 89.99390 * 1 2 3 27 27 H 1.09000 * 109.46921 * 209.99696 * 1 2 3 28 28 H 1.09002 * 109.46811 * 329.99113 * 1 2 3 29 29 H 1.08006 * 126.57892 * 0.02562 * 3 2 1 30 30 H 1.08000 * 126.58199 * 180.02562 * 4 3 2 31 31 H 1.00906 * 111.00216 * 328.95301 * 8 6 5 32 32 H 1.09003 * 109.46806 * 305.42151 * 9 8 6 33 33 H 1.09001 * 109.46962 * 65.41452 * 9 8 6 34 34 H 0.97002 * 119.99593 * 179.97438 * 14 13 11 35 35 H 1.09003 * 117.50417 * 359.97438 * 19 10 9 36 36 H 1.09003 * 117.49651 * 145.02407 * 19 10 9 37 37 H 1.09000 * 117.50102 * 252.51536 * 20 19 10 38 38 H 1.08995 * 117.51687 * 107.47989 * 20 19 10 39 39 H 1.08999 * 112.84905 * 196.19603 * 21 6 5 40 40 H 1.09000 * 113.61766 * 105.47289 * 22 21 6 41 41 H 1.09006 * 113.69158 * 334.57631 * 22 21 6 42 42 H 1.08998 * 113.61784 * 139.97995 * 23 22 21 43 43 H 1.09002 * 113.61446 * 270.79879 * 23 22 21 44 44 H 1.08995 * 113.61707 * 89.16076 * 24 23 22 45 45 H 1.09003 * 113.61329 * 220.05861 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7705 -1.6378 -0.0030 7 1 5.6506 -1.0992 0.3484 8 7 4.5059 -2.7764 0.8866 9 6 5.7596 -3.3600 1.3822 10 6 5.4503 -4.6203 2.1928 11 6 4.3563 -5.4968 1.6394 12 1 3.3436 -5.3875 1.9981 13 6 4.6486 -6.4381 0.6754 14 7 5.8515 -6.4856 0.1459 15 14 3.3358 -7.6459 0.1211 16 1 2.5845 -7.0699 -1.0230 17 1 3.9783 -8.9173 -0.2984 18 1 2.4010 -7.9108 1.2442 19 6 5.5837 -4.5319 3.7143 20 6 6.6188 -5.3101 2.8996 21 6 5.0183 -2.1477 -1.4241 22 6 5.4260 -1.0427 -2.4127 23 6 4.5264 -1.7430 -3.4447 24 6 3.7326 -2.3092 -2.2555 25 8 2.2925 -1.0894 -0.0073 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.9665 2.1205 0.0004 30 1 4.5212 1.2434 -0.0004 31 1 3.9059 -2.5060 1.6515 32 1 6.3985 -3.6188 0.5378 33 1 6.2714 -2.6364 2.0166 34 1 6.0571 -7.1481 -0.5320 35 1 5.8923 -3.5761 4.1379 36 1 4.8801 -5.1078 4.3155 37 1 6.5961 -6.3980 2.9646 38 1 7.6079 -4.8664 2.7867 39 1 5.6695 -3.0213 -1.4528 40 1 6.4842 -1.0589 -2.6736 41 1 5.0750 -0.0503 -2.1295 42 1 3.9528 -1.0531 -4.0636 43 1 5.0426 -2.5056 -4.0279 44 1 2.9171 -1.6645 -1.9282 45 1 3.4257 -3.3465 -2.3896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430725044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:10 Heat of formation + Delta-G solvation = 45.845545 kcal Electronic energy + Delta-G solvation = -24026.741024 eV Core-core repulsion = 20818.717649 eV Total energy + Delta-G solvation = -3208.023376 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.59629 -39.98226 -38.57178 -35.81777 -34.01523 -33.83760 -32.70009 -29.76021 -27.45618 -26.65829 -26.43286 -25.78862 -22.97243 -22.68914 -22.58309 -21.17700 -20.82360 -20.09795 -18.09176 -17.47575 -17.30280 -16.56517 -16.34924 -16.03805 -15.78496 -15.46916 -15.19948 -14.65891 -14.45973 -13.96329 -13.88896 -13.72715 -13.64563 -13.48887 -13.28296 -13.15140 -12.88171 -12.82582 -12.71870 -12.44889 -12.36483 -12.30483 -11.95436 -11.57968 -11.33192 -11.12093 -11.09749 -10.71602 -10.68949 -10.31195 -9.86039 -9.12221 -8.97753 -7.97808 -6.00376 0.84913 1.40642 1.43346 1.50217 1.74270 2.07879 2.50471 3.20365 3.34327 3.56295 3.65754 3.83529 3.87462 3.98656 4.06067 4.15497 4.22018 4.38367 4.43679 4.54379 4.60334 4.64998 4.74062 4.75413 4.79459 4.84087 4.87983 4.90548 4.92904 4.98844 5.01255 5.04739 5.08757 5.14822 5.19376 5.29368 5.32725 5.43052 5.64408 5.66772 5.69610 5.74077 5.90872 6.29236 6.41869 6.59562 6.72497 6.99413 7.63053 9.11762 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.005524 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.883526 B = 5067.183181 C = 5216.960128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.036 4.036 3 C -0.216 4.216 4 C -0.210 4.210 5 C -0.008 4.008 6 C 0.178 3.822 7 H 0.070 0.930 8 N -0.662 5.662 9 C 0.124 3.876 10 C 0.022 3.978 11 C -0.464 4.464 12 H 0.041 0.959 13 C 0.033 3.967 14 N -0.907 5.907 15 Si 0.932 3.068 16 H -0.286 1.286 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.194 4.194 20 C -0.162 4.162 21 C -0.097 4.097 22 C -0.124 4.124 23 C -0.133 4.133 24 C -0.130 4.130 25 O -0.182 6.182 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.170 0.830 30 H 0.161 0.839 31 H 0.334 0.666 32 H 0.046 0.954 33 H 0.013 0.987 34 H 0.252 0.748 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 16.662 -3.025 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C -0.234 4.234 4 C -0.230 4.230 5 C -0.058 4.058 6 C 0.069 3.931 7 H 0.087 0.913 8 N -0.292 5.292 9 C -0.005 4.005 10 C 0.021 3.979 11 C -0.502 4.502 12 H 0.060 0.940 13 C -0.166 4.166 14 N -0.546 5.546 15 Si 0.760 3.240 16 H -0.212 1.212 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.231 4.231 20 C -0.200 4.200 21 C -0.116 4.116 22 C -0.161 4.161 23 C -0.170 4.170 24 C -0.168 4.168 25 O -0.079 6.079 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.129 0.871 29 H 0.188 0.812 30 H 0.179 0.821 31 H 0.151 0.849 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.061 0.939 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.211 15.795 -3.668 17.032 hybrid contribution -0.056 -0.560 0.310 0.643 sum -5.267 15.235 -3.357 16.465 Atomic orbital electron populations 1.20440 0.83248 1.04837 1.04327 1.23235 0.95555 0.84212 1.05567 1.21786 0.91983 1.00128 1.09550 1.21779 0.99304 0.93015 1.08906 1.22280 0.82828 0.94313 1.06427 1.20077 0.90192 0.88124 0.94742 0.91276 1.60156 1.16468 1.29738 1.22854 1.21243 0.89483 0.93428 0.96337 1.19006 0.96118 0.94360 0.88420 1.20292 0.93056 1.16142 1.20696 0.94050 1.25354 0.96424 0.98677 0.96173 1.70093 1.21035 1.35584 1.27919 0.85972 0.80416 0.79238 0.78384 1.21241 1.21309 1.19787 1.23076 1.02977 1.00845 0.96202 1.22388 0.93582 0.97263 1.06782 1.22514 0.98200 0.98645 0.92226 1.22926 1.00091 0.97756 0.95360 1.22749 0.98349 0.99959 0.95935 1.22925 0.96929 0.99739 0.97184 1.84114 1.16734 1.35958 1.71106 0.89167 0.91076 0.87110 0.81215 0.82107 0.84854 0.93554 0.96933 0.93884 0.89342 0.90770 0.92470 0.90912 0.91120 0.90609 0.89063 0.90322 0.90477 0.90267 0.94648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.42 71.24 0.74 -0.52 16 2 C -0.04 -0.92 7.32 24.83 0.18 -0.74 16 3 C -0.22 -4.98 10.81 22.19 0.24 -4.74 16 4 C -0.21 -5.42 9.96 22.19 0.22 -5.20 16 5 C -0.01 -0.26 3.93 24.83 0.10 -0.16 16 6 C 0.18 6.11 2.60 44.17 0.11 6.23 16 7 H 0.07 2.20 7.85 -2.39 -0.02 2.18 16 8 N -0.66 -27.42 5.59 -495.46 -2.77 -30.19 16 9 C 0.12 5.48 5.53 86.30 0.48 5.96 16 10 C 0.02 1.06 1.74 -52.93 -0.09 0.96 16 11 C -0.46 -25.61 8.15 25.60 0.21 -25.40 16 12 H 0.04 2.35 7.82 -2.91 -0.02 2.33 16 13 C 0.03 1.84 5.39 84.65 0.46 2.30 16 14 N -0.91 -52.71 12.93 21.45 0.28 -52.43 16 15 Si 0.93 45.69 29.54 68.60 2.03 47.71 16 16 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 17 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 18 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 19 C -0.19 -8.26 9.88 30.59 0.30 -7.96 16 20 C -0.16 -7.62 9.46 30.59 0.29 -7.33 16 21 C -0.10 -3.37 3.77 -10.21 -0.04 -3.41 16 22 C -0.12 -3.29 7.48 31.12 0.23 -3.06 16 23 C -0.13 -3.64 8.08 31.12 0.25 -3.39 16 24 C -0.13 -4.53 7.30 31.18 0.23 -4.30 16 25 O -0.18 -6.08 9.05 -2.47 -0.02 -6.10 16 26 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.33 13.73 8.41 -89.69 -0.75 12.97 16 32 H 0.05 2.27 7.38 -2.39 -0.02 2.25 16 33 H 0.01 0.51 7.94 -2.39 -0.02 0.49 16 34 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.09 3.27 8.08 -2.39 -0.02 3.25 16 36 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.07 2.96 7.45 -2.39 -0.02 2.94 16 40 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.09 2.20 6.88 -2.38 -0.02 2.18 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.08 2.75 5.15 -2.39 -0.01 2.74 16 45 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -63.04 363.08 3.64 -59.40 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: 0.21 Total: 32.35 kcal Atomic # 6 Polarization: -54.66 SS G_CDS: 3.91 Total: -50.75 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -2.49 Total: -82.62 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.02 Total: -6.10 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -63.04 3.64 -59.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430725044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.250 kcal (2) G-P(sol) polarization free energy of solvation -63.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds