Wall clock time and date at job start Tue Mar 31 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34513 * 125.78685 * 2 1 4 4 C 1.41389 * 106.83860 * 179.97438 * 3 2 1 5 5 C 1.34512 * 106.83893 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.78669 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.47227 * 340.02046 * 6 5 4 8 8 N 1.46902 * 109.47078 * 220.02779 * 6 5 4 9 9 C 1.46899 * 111.00155 * 154.99882 * 8 6 5 10 10 C 1.53000 * 109.47097 * 184.95741 * 9 8 6 11 11 C 1.50699 * 115.54790 * 39.54557 * 10 9 8 12 12 H 1.07999 * 119.99899 * 264.91750 * 11 10 9 13 13 C 1.37873 * 120.00136 * 84.92071 * 11 10 9 14 14 N 1.31522 * 119.99975 * 353.48730 * 13 11 10 15 15 Si 1.86796 * 120.00553 * 173.48372 * 13 11 10 16 16 H 1.48500 * 109.46680 * 59.99788 * 15 13 11 17 17 H 1.48496 * 109.47500 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47040 * 300.00566 * 15 13 11 19 19 C 1.53000 * 117.49969 * 253.83806 * 10 9 8 20 20 C 1.52998 * 60.00193 * 252.50929 * 19 10 9 21 21 C 1.52993 * 109.47552 * 100.02109 * 6 5 4 22 22 C 1.53784 * 113.61124 * 39.13503 * 21 6 5 23 23 C 1.53950 * 87.02180 * 220.04691 * 22 21 6 24 24 C 1.53780 * 87.11188 * 25.36348 * 23 22 21 25 25 O 1.34299 * 108.42212 * 359.97438 * 5 4 3 26 26 H 1.09004 * 109.47063 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47309 * 299.99683 * 1 2 3 28 28 H 1.08991 * 109.47119 * 59.99826 * 1 2 3 29 29 H 1.08000 * 126.58298 * 0.02562 * 3 2 1 30 30 H 1.07997 * 126.57752 * 180.02562 * 4 3 2 31 31 H 1.00903 * 110.99473 * 278.94607 * 8 6 5 32 32 H 1.08995 * 109.47345 * 304.96098 * 9 8 6 33 33 H 1.09007 * 109.47292 * 64.95907 * 9 8 6 34 34 H 0.96999 * 120.00196 * 180.02562 * 14 13 11 35 35 H 1.08995 * 117.49775 * 359.97438 * 19 10 9 36 36 H 1.08997 * 117.49951 * 145.02021 * 19 10 9 37 37 H 1.09000 * 117.50538 * 252.51168 * 20 19 10 38 38 H 1.09005 * 117.51675 * 107.47863 * 20 19 10 39 39 H 1.08998 * 112.85473 * 170.32901 * 21 6 5 40 40 H 1.08999 * 113.61708 * 334.57064 * 22 21 6 41 41 H 1.09008 * 113.61332 * 105.47012 * 22 21 6 42 42 H 1.08999 * 113.54014 * 270.81259 * 23 22 21 43 43 H 1.09002 * 113.74219 * 139.94033 * 23 22 21 44 44 H 1.09002 * 113.61698 * 220.08897 * 24 23 22 45 45 H 1.09007 * 113.61686 * 89.18390 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 0.0006 5 6 3.5814 -0.7122 0.0004 6 6 4.7706 -1.6378 0.0003 7 1 5.6506 -1.0987 -0.3507 8 7 4.5056 -2.7753 -0.8907 9 6 5.7592 -3.3582 -1.3874 10 6 5.4431 -4.4564 -2.4047 11 6 4.3028 -4.1625 -3.3451 12 1 3.3088 -4.5173 -3.1159 13 6 4.5284 -3.4408 -4.4979 14 7 5.7073 -2.8997 -4.7149 15 14 3.1597 -3.2314 -5.7518 16 1 2.0078 -2.5423 -5.1167 17 1 3.6537 -2.4197 -6.8930 18 1 2.7293 -4.5655 -6.2421 19 6 5.6374 -5.9077 -1.9610 20 6 6.6165 -5.2727 -2.9505 21 6 5.0188 -2.1494 1.4206 22 6 3.7287 -2.4636 2.1964 23 6 4.4132 -1.8426 3.4276 24 6 5.2707 -1.0293 2.4437 25 8 2.2924 -1.0894 0.0002 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.9665 2.1204 0.0004 30 1 4.5212 1.2434 0.0012 31 1 3.9408 -3.4723 -0.4289 32 1 6.3569 -2.5818 -1.8647 33 1 6.3169 -3.7849 -0.5536 34 1 5.8660 -2.3916 -5.5258 35 1 5.9908 -6.0801 -0.9444 36 1 4.9403 -6.6502 -2.3490 37 1 6.5634 -5.5975 -3.9897 38 1 7.6136 -5.0271 -2.5850 39 1 5.7574 -2.9501 1.4591 40 1 2.8621 -1.9015 1.8486 41 1 3.5294 -3.5305 2.2983 42 1 4.9854 -2.5600 4.0157 43 1 3.7485 -1.2301 4.0369 44 1 6.3144 -0.9397 2.7449 45 1 4.8265 -0.0741 2.1636 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430725045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:14 Heat of formation + Delta-G solvation = 58.256795 kcal Electronic energy + Delta-G solvation = -23966.731598 eV Core-core repulsion = 20759.246415 eV Total energy + Delta-G solvation = -3207.485183 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.30482 -38.99505 -36.79156 -34.26120 -32.79193 -31.74638 -31.55490 -28.45992 -25.64344 -25.54684 -25.22782 -24.06218 -21.81316 -21.33552 -21.00334 -19.88601 -19.09819 -18.95500 -16.49074 -16.17359 -15.75584 -15.29161 -14.92416 -14.49013 -14.30482 -14.12167 -13.48896 -13.08037 -13.00787 -12.89857 -12.75070 -12.50027 -12.24645 -12.13820 -11.97468 -11.84601 -11.57271 -11.38093 -11.15471 -10.83293 -10.67915 -10.53256 -10.40664 -10.22623 -10.09553 -10.04789 -9.46502 -9.40242 -8.76000 -8.25315 -7.98199 -7.86308 -7.41125 -5.85377 -3.85095 2.13397 2.97090 3.31174 3.42949 3.46234 3.50330 4.53794 4.59020 4.73545 4.84651 4.88540 5.00714 5.12080 5.29292 5.37678 5.40748 5.47437 5.51040 5.53374 5.57365 5.76599 5.79679 5.80731 5.87052 5.93244 5.96017 6.09508 6.14839 6.20330 6.31454 6.34861 6.38198 6.45046 6.53498 6.61781 6.69776 6.77440 6.88362 6.97363 7.14811 7.48125 7.51613 7.62752 8.02882 8.06622 8.24885 8.62795 9.10429 9.77360 11.25322 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.006256 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.629858 B = 4474.590799 C = 5867.995329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.031 4.031 3 C -0.212 4.212 4 C -0.227 4.227 5 C 0.045 3.955 6 C 0.171 3.829 7 H 0.100 0.900 8 N -0.645 5.645 9 C 0.110 3.890 10 C 0.049 3.951 11 C -0.462 4.462 12 H 0.055 0.945 13 C 0.074 3.926 14 N -0.885 5.885 15 Si 0.885 3.115 16 H -0.278 1.278 17 H -0.291 1.291 18 H -0.280 1.280 19 C -0.218 4.218 20 C -0.157 4.157 21 C -0.141 4.141 22 C -0.138 4.138 23 C -0.140 4.140 24 C -0.136 4.136 25 O -0.157 6.157 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.338 0.662 32 H 0.071 0.929 33 H -0.004 1.004 34 H 0.256 0.744 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.030 5.542 13.963 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 C -0.231 4.231 4 C -0.247 4.247 5 C -0.006 4.006 6 C 0.060 3.940 7 H 0.118 0.882 8 N -0.273 5.273 9 C -0.019 4.019 10 C 0.048 3.952 11 C -0.500 4.500 12 H 0.074 0.926 13 C -0.128 4.128 14 N -0.522 5.522 15 Si 0.713 3.287 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.206 1.206 19 C -0.256 4.256 20 C -0.195 4.195 21 C -0.162 4.162 22 C -0.176 4.176 23 C -0.178 4.178 24 C -0.174 4.174 25 O -0.053 6.053 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.089 0.911 33 H 0.014 0.986 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.127 5.735 13.233 15.001 hybrid contribution -0.168 -0.005 -0.091 0.191 sum -4.295 5.730 13.143 14.967 Atomic orbital electron populations 1.20214 0.85890 1.03735 1.02821 1.22302 0.93855 0.84690 1.07317 1.21381 0.92841 0.98864 1.09993 1.21399 0.97821 0.93864 1.11567 1.22329 0.82699 0.93800 1.01810 1.20108 0.90875 0.92419 0.90615 0.88198 1.60263 1.19038 1.10644 1.37376 1.21531 0.88608 0.97631 0.94127 1.18864 0.96079 0.85308 0.94902 1.20099 0.92936 1.33733 1.03274 0.92638 1.24828 0.95083 0.95047 0.97833 1.69988 1.21864 1.34242 1.26154 0.86785 0.82937 0.77819 0.81133 1.20320 1.21641 1.20629 1.23084 1.04843 1.00444 0.97197 1.22483 0.93295 1.06339 0.97430 1.23370 0.98824 0.99196 0.94760 1.23091 0.97392 1.01030 0.96041 1.22788 0.99160 0.99432 0.96374 1.22949 0.99825 0.98165 0.96470 1.84045 1.16356 1.34374 1.70513 0.90760 0.90374 0.90161 0.84296 0.84162 0.84403 0.91081 0.98621 0.93471 0.92151 0.90600 0.90105 0.92174 0.88645 0.89190 0.91754 0.90654 0.91937 0.91820 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.42 36.01 0.38 -0.40 16 2 C -0.03 -0.48 7.32 -35.62 -0.26 -0.74 16 3 C -0.21 -3.14 10.81 -39.70 -0.43 -3.57 16 4 C -0.23 -3.61 9.75 -39.70 -0.39 -4.00 16 5 C 0.05 0.78 4.34 -35.63 -0.15 0.62 16 6 C 0.17 2.90 2.59 -68.87 -0.18 2.72 16 7 H 0.10 1.73 7.71 -51.92 -0.40 1.33 16 8 N -0.65 -13.10 5.52 -107.95 -0.60 -13.69 16 9 C 0.11 2.39 5.59 -3.82 -0.02 2.36 16 10 C 0.05 1.19 1.73 -155.66 -0.27 0.92 16 11 C -0.46 -12.64 8.15 -34.44 -0.28 -12.92 16 12 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 13 C 0.07 2.07 5.39 -17.82 -0.10 1.97 16 14 N -0.88 -25.50 12.94 55.43 0.72 -24.79 16 15 Si 0.88 22.08 29.54 -169.99 -5.02 17.05 16 16 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 C -0.22 -4.74 9.88 -26.73 -0.26 -5.00 16 20 C -0.16 -3.70 9.48 -26.73 -0.25 -3.95 16 21 C -0.14 -1.97 3.57 -89.81 -0.32 -2.29 16 22 C -0.14 -1.85 7.22 -25.83 -0.19 -2.03 16 23 C -0.14 -1.60 8.09 -25.83 -0.21 -1.81 16 24 C -0.14 -1.65 7.46 -25.92 -0.19 -1.84 16 25 O -0.16 -2.78 8.94 5.73 0.05 -2.73 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.34 6.70 8.39 -39.29 -0.33 6.37 16 32 H 0.07 1.71 7.93 -51.93 -0.41 1.29 16 33 H 0.00 -0.08 7.39 -51.92 -0.38 -0.47 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 36 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 37 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.10 1.35 7.59 -51.93 -0.39 0.95 16 40 H 0.09 1.33 5.22 -51.93 -0.27 1.06 16 41 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 1.08 6.45 -51.92 -0.33 0.74 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -29.58 362.47 -10.08 -39.66 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -7.56 Total: 8.98 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: -3.13 Total: -29.95 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.12 Total: -38.48 kcal Atomic # 8 Polarization: -2.78 SS G_CDS: 0.05 Total: -2.73 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.58 -10.08 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430725045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.918 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds