Wall clock time and date at job start Tue Mar 31 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34513 * 125.78685 * 2 1 4 4 C 1.41389 * 106.83860 * 179.97438 * 3 2 1 5 5 C 1.34512 * 106.83893 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.78669 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.47227 * 340.02046 * 6 5 4 8 8 N 1.46902 * 109.47078 * 220.02779 * 6 5 4 9 9 C 1.46899 * 111.00155 * 154.99882 * 8 6 5 10 10 C 1.53000 * 109.47097 * 184.95741 * 9 8 6 11 11 C 1.50699 * 115.54790 * 39.54557 * 10 9 8 12 12 H 1.07999 * 119.99899 * 264.91750 * 11 10 9 13 13 C 1.37873 * 120.00136 * 84.92071 * 11 10 9 14 14 N 1.31522 * 119.99975 * 353.48730 * 13 11 10 15 15 Si 1.86796 * 120.00553 * 173.48372 * 13 11 10 16 16 H 1.48500 * 109.46680 * 59.99788 * 15 13 11 17 17 H 1.48496 * 109.47500 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47040 * 300.00566 * 15 13 11 19 19 C 1.53000 * 117.49969 * 253.83806 * 10 9 8 20 20 C 1.52998 * 60.00193 * 252.50929 * 19 10 9 21 21 C 1.52993 * 109.47552 * 100.02109 * 6 5 4 22 22 C 1.53784 * 113.61124 * 39.13503 * 21 6 5 23 23 C 1.53950 * 87.02180 * 220.04691 * 22 21 6 24 24 C 1.53780 * 87.11188 * 25.36348 * 23 22 21 25 25 O 1.34299 * 108.42212 * 359.97438 * 5 4 3 26 26 H 1.09004 * 109.47063 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47309 * 299.99683 * 1 2 3 28 28 H 1.08991 * 109.47119 * 59.99826 * 1 2 3 29 29 H 1.08000 * 126.58298 * 0.02562 * 3 2 1 30 30 H 1.07997 * 126.57752 * 180.02562 * 4 3 2 31 31 H 1.00903 * 110.99473 * 278.94607 * 8 6 5 32 32 H 1.08995 * 109.47345 * 304.96098 * 9 8 6 33 33 H 1.09007 * 109.47292 * 64.95907 * 9 8 6 34 34 H 0.96999 * 120.00196 * 180.02562 * 14 13 11 35 35 H 1.08995 * 117.49775 * 359.97438 * 19 10 9 36 36 H 1.08997 * 117.49951 * 145.02021 * 19 10 9 37 37 H 1.09000 * 117.50538 * 252.51168 * 20 19 10 38 38 H 1.09005 * 117.51675 * 107.47863 * 20 19 10 39 39 H 1.08998 * 112.85473 * 170.32901 * 21 6 5 40 40 H 1.08999 * 113.61708 * 334.57064 * 22 21 6 41 41 H 1.09008 * 113.61332 * 105.47012 * 22 21 6 42 42 H 1.08999 * 113.54014 * 270.81259 * 23 22 21 43 43 H 1.09002 * 113.74219 * 139.94033 * 23 22 21 44 44 H 1.09002 * 113.61698 * 220.08897 * 24 23 22 45 45 H 1.09007 * 113.61686 * 89.18390 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 0.0006 5 6 3.5814 -0.7122 0.0004 6 6 4.7706 -1.6378 0.0003 7 1 5.6506 -1.0987 -0.3507 8 7 4.5056 -2.7753 -0.8907 9 6 5.7592 -3.3582 -1.3874 10 6 5.4431 -4.4564 -2.4047 11 6 4.3028 -4.1625 -3.3451 12 1 3.3088 -4.5173 -3.1159 13 6 4.5284 -3.4408 -4.4979 14 7 5.7073 -2.8997 -4.7149 15 14 3.1597 -3.2314 -5.7518 16 1 2.0078 -2.5423 -5.1167 17 1 3.6537 -2.4197 -6.8930 18 1 2.7293 -4.5655 -6.2421 19 6 5.6374 -5.9077 -1.9610 20 6 6.6165 -5.2727 -2.9505 21 6 5.0188 -2.1494 1.4206 22 6 3.7287 -2.4636 2.1964 23 6 4.4132 -1.8426 3.4276 24 6 5.2707 -1.0293 2.4437 25 8 2.2924 -1.0894 0.0002 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.9665 2.1204 0.0004 30 1 4.5212 1.2434 0.0012 31 1 3.9408 -3.4723 -0.4289 32 1 6.3569 -2.5818 -1.8647 33 1 6.3169 -3.7849 -0.5536 34 1 5.8660 -2.3916 -5.5258 35 1 5.9908 -6.0801 -0.9444 36 1 4.9403 -6.6502 -2.3490 37 1 6.5634 -5.5975 -3.9897 38 1 7.6136 -5.0271 -2.5850 39 1 5.7574 -2.9501 1.4591 40 1 2.8621 -1.9015 1.8486 41 1 3.5294 -3.5305 2.2983 42 1 4.9854 -2.5600 4.0157 43 1 3.7485 -1.2301 4.0369 44 1 6.3144 -0.9397 2.7449 45 1 4.8265 -0.0741 2.1636 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430725045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:13 Heat of formation + Delta-G solvation = 43.348402 kcal Electronic energy + Delta-G solvation = -23967.378074 eV Core-core repulsion = 20759.246415 eV Total energy + Delta-G solvation = -3208.131660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.51638 -40.13685 -38.54002 -35.71929 -33.97635 -33.85080 -32.72044 -29.75067 -27.47376 -26.60931 -26.52372 -25.57800 -23.12842 -22.75688 -22.55453 -21.12463 -20.81565 -20.17502 -18.12682 -17.51436 -17.22058 -16.60443 -16.33712 -16.16619 -15.73025 -15.52518 -15.07285 -14.75980 -14.10747 -13.92975 -13.82124 -13.71592 -13.65047 -13.44223 -13.34685 -13.17013 -12.92031 -12.85583 -12.73228 -12.57629 -12.46959 -12.34187 -11.96122 -11.59467 -11.34475 -11.25293 -11.10881 -10.72840 -10.63890 -10.32168 -9.86449 -9.10000 -8.89045 -7.99219 -6.02296 0.92573 1.41024 1.43015 1.48442 1.77767 2.16091 2.49696 3.24437 3.33059 3.56393 3.67528 3.78803 3.81629 3.97393 3.99570 4.16618 4.24595 4.36420 4.42493 4.51116 4.58164 4.64845 4.73221 4.74956 4.79488 4.81367 4.85556 4.89511 4.94621 4.99480 5.02071 5.06304 5.07604 5.11811 5.20465 5.29821 5.35799 5.37340 5.63798 5.65533 5.68775 5.76511 5.89637 6.32201 6.44989 6.57627 6.73601 6.98588 7.61518 9.10265 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.006256 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.629858 B = 4474.590799 C = 5867.995329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.043 4.043 3 C -0.220 4.220 4 C -0.232 4.232 5 C 0.021 3.979 6 C 0.174 3.826 7 H 0.089 0.911 8 N -0.664 5.664 9 C 0.127 3.873 10 C 0.020 3.980 11 C -0.466 4.466 12 H 0.042 0.958 13 C 0.029 3.971 14 N -0.910 5.910 15 Si 0.935 3.065 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.273 1.273 19 C -0.191 4.191 20 C -0.163 4.163 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.128 4.128 24 C -0.130 4.130 25 O -0.179 6.179 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.165 0.835 30 H 0.152 0.848 31 H 0.338 0.662 32 H 0.040 0.960 33 H 0.019 0.981 34 H 0.253 0.747 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 5.844 15.665 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C -0.239 4.239 4 C -0.252 4.252 5 C -0.030 4.030 6 C 0.064 3.936 7 H 0.107 0.893 8 N -0.293 5.293 9 C -0.002 4.002 10 C 0.019 3.981 11 C -0.505 4.505 12 H 0.061 0.939 13 C -0.170 4.170 14 N -0.549 5.549 15 Si 0.762 3.238 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.199 1.199 19 C -0.228 4.228 20 C -0.202 4.202 21 C -0.159 4.159 22 C -0.178 4.178 23 C -0.165 4.165 24 C -0.168 4.168 25 O -0.076 6.076 26 H 0.091 0.909 27 H 0.124 0.876 28 H 0.110 0.890 29 H 0.182 0.818 30 H 0.170 0.830 31 H 0.156 0.844 32 H 0.059 0.941 33 H 0.037 0.963 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.813 6.032 14.943 16.818 hybrid contribution -0.009 -0.089 -0.612 0.618 sum -4.822 5.943 14.332 16.247 Atomic orbital electron populations 1.20406 0.83136 1.04288 1.04718 1.23162 0.95570 0.84263 1.06255 1.21724 0.92224 1.00108 1.09829 1.21703 0.99009 0.93683 1.10779 1.22380 0.82772 0.94300 1.03542 1.20076 0.90664 0.91074 0.91812 0.89346 1.60125 1.18618 1.11322 1.39209 1.21195 0.89116 0.95917 0.93987 1.19014 0.95714 0.87531 0.95852 1.20316 0.93336 1.32907 1.03895 0.93929 1.25412 0.96780 0.95320 0.99477 1.70088 1.23189 1.35215 1.26411 0.85992 0.80598 0.77867 0.79325 1.20791 1.21455 1.19876 1.23066 1.03203 0.98369 0.98123 1.22394 0.94088 1.06969 0.96709 1.23300 0.99386 1.00016 0.93187 1.23052 0.96622 1.00999 0.97078 1.22756 0.98757 0.99301 0.95674 1.22906 1.00839 0.97284 0.95761 1.84027 1.16759 1.35728 1.71073 0.90887 0.87588 0.88988 0.81758 0.82997 0.84360 0.94104 0.96303 0.93854 0.89101 0.90782 0.92595 0.90853 0.88539 0.90701 0.91680 0.89127 0.91094 0.90421 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 10.42 71.24 0.74 -0.66 16 2 C -0.04 -1.26 7.32 24.83 0.18 -1.08 16 3 C -0.22 -6.24 10.81 22.19 0.24 -6.00 16 4 C -0.23 -7.28 9.75 22.19 0.22 -7.06 16 5 C 0.02 0.72 4.34 24.83 0.11 0.83 16 6 C 0.17 5.93 2.59 44.17 0.11 6.05 16 7 H 0.09 3.14 7.71 -2.38 -0.02 3.12 16 8 N -0.66 -27.22 5.52 -495.45 -2.73 -29.95 16 9 C 0.13 5.53 5.59 86.30 0.48 6.01 16 10 C 0.02 0.95 1.73 -52.93 -0.09 0.86 16 11 C -0.47 -25.80 8.15 25.60 0.21 -25.59 16 12 H 0.04 2.41 7.82 -2.91 -0.02 2.38 16 13 C 0.03 1.64 5.39 84.65 0.46 2.10 16 14 N -0.91 -53.47 12.94 21.45 0.28 -53.19 16 15 Si 0.93 45.88 29.54 68.60 2.03 47.91 16 16 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 17 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 18 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 19 C -0.19 -7.97 9.88 30.59 0.30 -7.67 16 20 C -0.16 -7.64 9.48 30.60 0.29 -7.35 16 21 C -0.14 -3.74 3.57 -10.27 -0.04 -3.78 16 22 C -0.14 -3.58 7.22 31.18 0.23 -3.36 16 23 C -0.13 -2.61 8.09 31.18 0.25 -2.35 16 24 C -0.13 -2.91 7.46 31.12 0.23 -2.68 16 25 O -0.18 -6.36 8.94 -2.42 -0.02 -6.38 16 26 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.15 4.22 8.06 -2.91 -0.02 4.19 16 31 H 0.34 13.50 8.39 -89.69 -0.75 12.74 16 32 H 0.04 2.00 7.93 -2.39 -0.02 1.98 16 33 H 0.02 0.73 7.39 -2.38 -0.02 0.71 16 34 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.09 3.25 8.08 -2.39 -0.02 3.23 16 36 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.07 3.18 8.14 -2.38 -0.02 3.16 16 39 H 0.10 2.57 7.59 -2.39 -0.02 2.55 16 40 H 0.07 2.18 5.22 -2.39 -0.01 2.16 16 41 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.08 1.90 6.45 -2.38 -0.02 1.88 16 Total: -1.00 -63.82 362.47 3.69 -60.14 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 0.21 Total: 33.21 kcal Atomic # 6 Polarization: -55.65 SS G_CDS: 3.92 Total: -51.73 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -2.46 Total: -83.15 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.02 Total: -6.38 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -63.82 3.69 -60.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430725045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.484 kcal (2) G-P(sol) polarization free energy of solvation -63.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds