Wall clock time and date at job start Tue Mar 31 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46893 * 2 1 4 4 C 1.52998 * 109.90847 * 295.25505 * 3 2 1 5 5 O 1.42898 * 109.46724 * 67.25877 * 4 3 2 6 6 C 1.53998 * 109.91913 * 56.36238 * 3 2 1 7 7 C 1.54592 * 105.22782 * 118.07570 * 6 3 2 8 8 C 1.55098 * 102.84589 * 338.15147 * 7 6 3 9 9 N 1.47903 * 109.91440 * 173.94875 * 3 2 1 10 10 C 1.46900 * 111.00057 * 26.49331 * 9 3 2 11 11 C 1.50696 * 109.47042 * 169.99841 * 10 9 3 12 12 C 1.38636 * 119.75328 * 269.72304 * 11 10 9 13 13 C 1.37616 * 120.25546 * 179.76437 * 12 11 10 14 14 C 1.40718 * 119.73918 * 0.48586 * 13 12 11 15 15 C 1.41400 * 120.24202 * 179.78633 * 14 13 12 16 16 H 1.08004 * 119.99839 * 208.62373 * 15 14 13 17 17 C 1.39949 * 119.99824 * 28.62990 * 15 14 13 18 18 N 1.30815 * 119.99984 * 10.57818 * 17 15 14 19 19 Si 1.86794 * 119.99584 * 190.58582 * 17 15 14 20 20 H 1.48497 * 109.47648 * 59.99844 * 19 17 15 21 21 H 1.48507 * 109.46957 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47209 * 299.99277 * 19 17 15 23 23 C 1.40715 * 119.51327 * 359.76980 * 14 13 12 24 24 C 1.37620 * 119.74689 * 0.02562 * 23 14 13 25 25 H 1.09000 * 109.46893 * 67.59495 * 1 2 3 26 26 H 1.08999 * 109.46859 * 187.58861 * 1 2 3 27 27 H 1.08996 * 109.47342 * 307.59608 * 1 2 3 28 28 H 1.09001 * 109.47261 * 239.99985 * 2 1 3 29 29 H 1.09004 * 109.46945 * 119.99789 * 2 1 3 30 30 H 1.08999 * 109.47082 * 187.25401 * 4 3 2 31 31 H 1.08998 * 109.46909 * 307.26117 * 4 3 2 32 32 H 0.96703 * 114.00198 * 179.97438 * 5 4 3 33 33 H 1.09002 * 110.30729 * 237.04807 * 6 3 2 34 34 H 1.09003 * 110.30871 * 359.10983 * 6 3 2 35 35 H 1.09002 * 110.72701 * 96.44977 * 7 6 3 36 36 H 1.09003 * 110.72168 * 219.73520 * 7 6 3 37 37 H 1.09003 * 110.59659 * 278.87458 * 8 7 6 38 38 H 1.08997 * 110.83096 * 155.84998 * 8 7 6 39 39 H 1.08999 * 109.47046 * 289.99773 * 10 9 3 40 40 H 1.08997 * 109.47024 * 49.99930 * 10 9 3 41 41 H 1.08008 * 119.86707 * 0.02562 * 12 11 10 42 42 H 1.07997 * 120.13270 * 180.23281 * 13 12 11 43 43 H 0.97000 * 119.99973 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.12573 * 180.02562 * 23 14 13 45 45 H 1.07995 * 119.87801 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6349 2.1383 -1.3010 5 8 0.2148 2.2929 -1.3363 6 6 1.4587 2.2045 1.2054 7 6 2.6834 2.6183 2.0532 8 6 3.7723 1.6108 1.6007 9 7 3.5116 1.4566 0.1466 10 6 4.1036 0.2135 -0.3655 11 6 5.6022 0.3595 -0.4284 12 6 6.1986 0.8418 -1.5832 13 6 7.5658 0.9838 -1.6502 14 6 8.3596 0.6277 -0.5443 15 6 9.7657 0.7650 -0.6032 16 1 10.3969 0.1129 -0.0177 17 6 10.3393 1.7460 -1.4199 18 7 9.5856 2.6656 -1.9655 19 14 12.1811 1.7422 -1.7311 20 1 12.5713 0.4637 -2.3781 21 1 12.5348 2.8757 -2.6229 22 1 12.9016 1.8839 -0.4404 23 6 7.7438 0.1342 0.6208 24 6 6.3745 0.0045 0.6668 25 1 -0.3633 0.3917 -0.9501 26 1 -0.3633 -1.0187 0.1357 27 1 -0.3634 0.6269 0.8142 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.1085 3.1187 -1.3514 31 1 1.9560 1.5355 -2.1505 32 1 -0.1138 2.7281 -2.1349 33 1 0.9157 3.0876 0.8686 34 1 0.8012 1.5543 1.7827 35 1 2.9844 3.6403 1.8229 36 1 2.4714 2.5078 3.1167 37 1 3.6512 0.6581 2.1164 38 1 4.7698 2.0153 1.7720 39 1 3.8465 -0.6118 0.2984 40 1 3.7161 0.0110 -1.3639 41 1 5.5875 1.1111 -2.4321 42 1 8.0280 1.3633 -2.5495 43 1 9.9833 3.3458 -2.5312 44 1 8.3435 -0.1418 1.4755 45 1 5.8997 -0.3736 1.5601 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439278471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:40 Heat of formation + Delta-G solvation = -32.179483 kcal Electronic energy + Delta-G solvation = -23587.992591 eV Core-core repulsion = 20376.585796 eV Total energy + Delta-G solvation = -3211.406795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.03395 -37.51841 -36.30918 -33.93383 -32.84058 -32.18221 -29.64397 -29.26055 -28.57606 -26.27705 -24.84072 -23.36134 -23.18784 -21.20952 -20.71494 -19.74091 -18.27907 -17.30019 -17.22323 -15.83968 -15.65628 -15.25025 -14.81574 -14.70462 -14.02959 -13.89904 -13.64317 -13.14250 -12.86999 -12.72195 -12.62378 -12.27180 -12.01351 -11.86764 -11.82650 -11.49381 -11.47858 -11.13879 -11.03591 -10.97425 -10.82206 -10.71823 -10.46390 -10.38640 -10.32284 -10.09895 -9.69767 -9.56159 -9.30446 -9.14965 -7.99894 -7.40478 -7.19755 -6.65861 -4.33052 2.78406 3.08413 3.10841 3.11664 3.19541 3.92270 3.97507 4.59856 4.74176 4.83499 4.90809 4.99689 5.26764 5.37903 5.43762 5.48156 5.56299 5.68619 5.71809 5.75219 5.80692 5.85361 5.93520 6.02274 6.05820 6.09450 6.21158 6.28346 6.32168 6.37439 6.40473 6.43521 6.47468 6.53620 6.98333 7.11866 7.27317 7.33558 7.42328 7.48472 7.63282 7.66390 7.90512 8.10022 8.17611 8.35016 8.69426 8.94631 9.01853 10.27801 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029377 B = 0.003558 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.897516 B = 7867.572128 C = 8047.581531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C 0.095 3.905 4 C 0.097 3.903 5 O -0.568 6.568 6 C -0.114 4.114 7 C -0.128 4.128 8 C 0.046 3.954 9 N -0.499 5.499 10 C 0.112 3.888 11 C -0.199 4.199 12 C -0.084 4.084 13 C -0.159 4.159 14 C 0.111 3.889 15 C -0.466 4.466 16 H 0.074 0.926 17 C 0.074 3.926 18 N -0.802 5.802 19 Si 0.910 3.090 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.267 1.267 23 C -0.222 4.222 24 C -0.087 4.087 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.372 0.628 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.038 0.962 38 H 0.087 0.913 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.119 0.881 43 H 0.279 0.721 44 H 0.090 0.910 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.447 -0.433 1.840 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.005 3.995 4 C 0.019 3.981 5 O -0.373 6.373 6 C -0.152 4.152 7 C -0.166 4.166 8 C -0.082 4.082 9 N -0.223 5.223 10 C -0.014 4.014 11 C -0.201 4.201 12 C -0.103 4.103 13 C -0.179 4.179 14 C 0.109 3.891 15 C -0.496 4.496 16 H 0.093 0.907 17 C -0.143 4.143 18 N -0.428 5.428 19 Si 0.734 3.266 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.242 4.242 24 C -0.106 4.106 25 H 0.093 0.907 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.219 0.781 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.105 0.895 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.137 0.863 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.141 -0.092 1.960 14.276 hybrid contribution 0.622 -0.295 -0.253 0.733 sum -13.519 -0.386 1.707 13.631 Atomic orbital electron populations 1.21876 0.95074 0.99959 1.03601 1.22105 0.97029 0.96656 1.01731 1.21719 0.89014 0.94111 0.94649 1.21963 0.80173 0.99419 0.96524 1.86496 1.22030 1.82732 1.46019 1.22437 0.97279 1.00165 0.95277 1.22575 0.95232 0.99977 0.98835 1.23162 0.99849 0.97493 0.87685 1.64718 1.05980 1.36462 1.15161 1.20935 0.93192 0.88907 0.98397 1.18890 0.91996 1.12720 0.96495 1.20494 0.94846 0.99002 0.95971 1.21357 0.92108 1.05018 0.99375 1.17620 0.93343 0.88313 0.89873 1.19544 0.92020 1.15100 1.22955 0.90742 1.25866 1.00398 0.94205 0.93787 1.69788 1.37495 1.10726 1.24783 0.86351 0.82490 0.78605 0.79111 1.18979 1.20397 1.19126 1.20985 0.93444 1.11833 0.97928 1.20340 0.93945 1.00389 0.95914 0.90676 0.94243 0.92708 0.91736 0.92464 0.92838 0.93915 0.78123 0.90860 0.91444 0.91011 0.91568 0.94356 0.89468 0.95228 0.91840 0.89673 0.86340 0.91011 0.89218 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.79 37.16 0.33 -1.36 16 2 C -0.14 -1.77 3.68 -26.73 -0.10 -1.86 16 3 C 0.09 1.30 0.57 -130.53 -0.07 1.22 16 4 C 0.10 1.23 6.10 37.16 0.23 1.46 16 5 O -0.57 -5.95 9.68 -35.23 -0.34 -6.29 16 6 C -0.11 -1.43 5.27 -25.37 -0.13 -1.57 16 7 C -0.13 -1.67 7.08 -24.79 -0.18 -1.84 16 8 C 0.05 0.71 5.66 -1.81 -0.01 0.70 16 9 N -0.50 -8.19 4.86 -216.31 -1.05 -9.24 16 10 C 0.11 1.98 3.78 -4.98 -0.02 1.96 16 11 C -0.20 -4.29 5.18 -104.33 -0.54 -4.83 16 12 C -0.08 -1.97 9.67 -39.66 -0.38 -2.35 16 13 C -0.16 -4.16 8.66 -38.87 -0.34 -4.49 16 14 C 0.11 2.97 5.55 -106.82 -0.59 2.38 16 15 C -0.47 -12.50 9.07 -37.74 -0.34 -12.85 16 16 H 0.07 1.92 7.87 -52.48 -0.41 1.51 16 17 C 0.07 1.88 5.26 -17.34 -0.09 1.79 16 18 N -0.80 -21.05 10.82 55.55 0.60 -20.45 16 19 Si 0.91 18.95 29.57 -169.99 -5.03 13.93 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 C -0.22 -5.47 9.80 -38.87 -0.38 -5.85 16 24 C -0.09 -1.93 8.78 -39.66 -0.35 -2.28 16 25 H 0.07 0.87 5.95 -51.93 -0.31 0.56 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.63 6.02 -51.93 -0.31 0.31 16 28 H 0.06 0.86 6.69 -51.93 -0.35 0.52 16 29 H 0.06 0.77 7.47 -51.93 -0.39 0.38 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.37 2.37 9.12 45.56 0.42 2.78 16 33 H 0.07 0.92 7.26 -51.93 -0.38 0.54 16 34 H 0.07 0.81 6.08 -51.93 -0.32 0.49 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.04 0.58 7.81 -51.93 -0.41 0.18 16 38 H 0.09 1.54 7.84 -51.93 -0.41 1.14 16 39 H 0.03 0.50 6.55 -51.93 -0.34 0.16 16 40 H 0.06 1.08 7.10 -51.93 -0.37 0.71 16 41 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 42 H 0.12 3.22 6.21 -52.49 -0.33 2.89 16 43 H 0.28 6.71 8.30 -40.82 -0.34 6.38 16 44 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 45 H 0.08 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -27.94 344.29 -10.01 -37.96 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.41 Total: 8.69 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: -2.97 Total: -29.78 kcal Atomic # 7 Polarization: -29.24 SS G_CDS: -0.45 Total: -29.69 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.34 Total: -6.29 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.94 -10.01 -37.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439278471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.779 kcal (2) G-P(sol) polarization free energy of solvation -27.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds