Wall clock time and date at job start Tue Mar 31 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46893 * 2 1 4 4 C 1.52998 * 109.90847 * 295.25505 * 3 2 1 5 5 O 1.42898 * 109.46724 * 67.25877 * 4 3 2 6 6 C 1.53998 * 109.91913 * 56.36238 * 3 2 1 7 7 C 1.54592 * 105.22782 * 118.07570 * 6 3 2 8 8 C 1.55098 * 102.84589 * 338.15147 * 7 6 3 9 9 N 1.47903 * 109.91440 * 173.94875 * 3 2 1 10 10 C 1.46900 * 111.00057 * 26.49331 * 9 3 2 11 11 C 1.50696 * 109.47042 * 169.99841 * 10 9 3 12 12 C 1.38636 * 119.75328 * 269.72304 * 11 10 9 13 13 C 1.37616 * 120.25546 * 179.76437 * 12 11 10 14 14 C 1.40718 * 119.73918 * 0.48586 * 13 12 11 15 15 C 1.41400 * 120.24202 * 179.78633 * 14 13 12 16 16 H 1.08004 * 119.99839 * 208.62373 * 15 14 13 17 17 C 1.39949 * 119.99824 * 28.62990 * 15 14 13 18 18 N 1.30815 * 119.99984 * 10.57818 * 17 15 14 19 19 Si 1.86794 * 119.99584 * 190.58582 * 17 15 14 20 20 H 1.48497 * 109.47648 * 59.99844 * 19 17 15 21 21 H 1.48507 * 109.46957 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47209 * 299.99277 * 19 17 15 23 23 C 1.40715 * 119.51327 * 359.76980 * 14 13 12 24 24 C 1.37620 * 119.74689 * 0.02562 * 23 14 13 25 25 H 1.09000 * 109.46893 * 67.59495 * 1 2 3 26 26 H 1.08999 * 109.46859 * 187.58861 * 1 2 3 27 27 H 1.08996 * 109.47342 * 307.59608 * 1 2 3 28 28 H 1.09001 * 109.47261 * 239.99985 * 2 1 3 29 29 H 1.09004 * 109.46945 * 119.99789 * 2 1 3 30 30 H 1.08999 * 109.47082 * 187.25401 * 4 3 2 31 31 H 1.08998 * 109.46909 * 307.26117 * 4 3 2 32 32 H 0.96703 * 114.00198 * 179.97438 * 5 4 3 33 33 H 1.09002 * 110.30729 * 237.04807 * 6 3 2 34 34 H 1.09003 * 110.30871 * 359.10983 * 6 3 2 35 35 H 1.09002 * 110.72701 * 96.44977 * 7 6 3 36 36 H 1.09003 * 110.72168 * 219.73520 * 7 6 3 37 37 H 1.09003 * 110.59659 * 278.87458 * 8 7 6 38 38 H 1.08997 * 110.83096 * 155.84998 * 8 7 6 39 39 H 1.08999 * 109.47046 * 289.99773 * 10 9 3 40 40 H 1.08997 * 109.47024 * 49.99930 * 10 9 3 41 41 H 1.08008 * 119.86707 * 0.02562 * 12 11 10 42 42 H 1.07997 * 120.13270 * 180.23281 * 13 12 11 43 43 H 0.97000 * 119.99973 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.12573 * 180.02562 * 23 14 13 45 45 H 1.07995 * 119.87801 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6349 2.1383 -1.3010 5 8 0.2148 2.2929 -1.3363 6 6 1.4587 2.2045 1.2054 7 6 2.6834 2.6183 2.0532 8 6 3.7723 1.6108 1.6007 9 7 3.5116 1.4566 0.1466 10 6 4.1036 0.2135 -0.3655 11 6 5.6022 0.3595 -0.4284 12 6 6.1986 0.8418 -1.5832 13 6 7.5658 0.9838 -1.6502 14 6 8.3596 0.6277 -0.5443 15 6 9.7657 0.7650 -0.6032 16 1 10.3969 0.1129 -0.0177 17 6 10.3393 1.7460 -1.4199 18 7 9.5856 2.6656 -1.9655 19 14 12.1811 1.7422 -1.7311 20 1 12.5713 0.4637 -2.3781 21 1 12.5348 2.8757 -2.6229 22 1 12.9016 1.8839 -0.4404 23 6 7.7438 0.1342 0.6208 24 6 6.3745 0.0045 0.6668 25 1 -0.3633 0.3917 -0.9501 26 1 -0.3633 -1.0187 0.1357 27 1 -0.3634 0.6269 0.8142 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.1085 3.1187 -1.3514 31 1 1.9560 1.5355 -2.1505 32 1 -0.1138 2.7281 -2.1349 33 1 0.9157 3.0876 0.8686 34 1 0.8012 1.5543 1.7827 35 1 2.9844 3.6403 1.8229 36 1 2.4714 2.5078 3.1167 37 1 3.6512 0.6581 2.1164 38 1 4.7698 2.0153 1.7720 39 1 3.8465 -0.6118 0.2984 40 1 3.7161 0.0110 -1.3639 41 1 5.5875 1.1111 -2.4321 42 1 8.0280 1.3633 -2.5495 43 1 9.9833 3.3458 -2.5312 44 1 8.3435 -0.1418 1.4755 45 1 5.8997 -0.3736 1.5601 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439278471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:39 Heat of formation + Delta-G solvation = -48.784271 kcal Electronic energy + Delta-G solvation = -23588.712628 eV Core-core repulsion = 20376.585796 eV Total energy + Delta-G solvation = -3212.126832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.19607 -39.29673 -37.30114 -35.71879 -33.90190 -33.62893 -31.36447 -31.03717 -29.68757 -27.93760 -26.02184 -24.85599 -24.23540 -22.90743 -22.24982 -21.35555 -19.39707 -19.18246 -18.18225 -17.20560 -16.94315 -16.71189 -16.13875 -15.77001 -15.70288 -15.55533 -15.08308 -14.35596 -14.31778 -14.00435 -13.88493 -13.75631 -13.61445 -13.31573 -13.09637 -12.91369 -12.77171 -12.62141 -12.47494 -12.30797 -12.06770 -12.01174 -11.94920 -11.85460 -11.48829 -11.37185 -11.22714 -11.09918 -11.01268 -10.61392 -9.32040 -9.30588 -9.05377 -8.55502 -6.33408 0.97640 1.17111 1.37904 1.49531 1.52149 2.22438 2.67984 2.95854 3.59046 3.73230 3.80441 3.89389 3.95270 4.19217 4.29878 4.32714 4.42483 4.43426 4.50522 4.54709 4.58271 4.61205 4.68212 4.73131 4.82220 4.88294 5.03446 5.05482 5.07619 5.09107 5.17632 5.18206 5.23763 5.37348 5.40054 5.41698 5.49337 5.62518 5.74355 5.94390 6.09519 6.13731 6.24164 6.31723 6.42593 6.74283 6.96305 6.97831 7.06860 8.40162 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029377 B = 0.003558 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.897516 B = 7867.572128 C = 8047.581531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C 0.092 3.908 4 C 0.104 3.896 5 O -0.568 6.568 6 C -0.107 4.107 7 C -0.122 4.122 8 C 0.043 3.957 9 N -0.516 5.516 10 C 0.121 3.879 11 C -0.185 4.185 12 C -0.090 4.090 13 C -0.182 4.182 14 C 0.077 3.923 15 C -0.505 4.505 16 H 0.072 0.928 17 C 0.032 3.968 18 N -0.835 5.835 19 Si 0.983 3.017 20 H -0.261 1.261 21 H -0.268 1.268 22 H -0.261 1.261 23 C -0.237 4.237 24 C -0.085 4.085 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.039 0.961 32 H 0.392 0.608 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.285 0.715 44 H 0.094 0.906 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.215 -0.657 2.346 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C 0.003 3.997 4 C 0.026 3.974 5 O -0.376 6.376 6 C -0.145 4.145 7 C -0.160 4.160 8 C -0.085 4.085 9 N -0.241 5.241 10 C -0.006 4.006 11 C -0.187 4.187 12 C -0.109 4.109 13 C -0.202 4.202 14 C 0.075 3.925 15 C -0.536 4.536 16 H 0.090 0.910 17 C -0.181 4.181 18 N -0.462 5.462 19 Si 0.804 3.196 20 H -0.185 1.185 21 H -0.193 1.193 22 H -0.185 1.185 23 C -0.257 4.257 24 C -0.104 4.104 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.241 0.759 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.112 0.888 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.942 -0.312 2.461 16.134 hybrid contribution 0.977 -0.232 -0.384 1.075 sum -14.965 -0.545 2.077 15.118 Atomic orbital electron populations 1.21809 0.93733 1.00618 1.03658 1.22064 0.98142 0.95760 1.01253 1.21800 0.87082 0.95102 0.95740 1.21754 0.81310 0.98560 0.95812 1.86445 1.20490 1.83083 1.47544 1.22405 0.97038 1.00310 0.94739 1.22546 0.94410 0.98813 1.00192 1.23139 0.99354 0.98444 0.87536 1.64587 1.08184 1.35565 1.15737 1.20812 0.90293 0.90063 0.99408 1.19325 0.94470 1.09740 0.95157 1.20720 0.94033 0.98807 0.97360 1.21304 0.93377 1.06605 0.98867 1.17953 0.94002 0.89619 0.90893 1.19803 0.92502 1.16431 1.24843 0.90958 1.26720 1.05275 0.93199 0.92934 1.69864 1.39589 1.11366 1.25424 0.85237 0.76234 0.78916 0.79181 1.18490 1.19262 1.18539 1.21188 0.94796 1.12125 0.97571 1.20621 0.93093 0.99549 0.97109 0.90704 0.93340 0.92494 0.92280 0.92841 0.93968 0.94309 0.75857 0.90582 0.90305 0.91626 0.89463 0.93662 0.92198 0.94025 0.91063 0.88129 0.88283 0.90458 0.88780 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.79 71.98 0.63 -2.15 16 2 C -0.13 -3.09 3.68 30.59 0.11 -2.98 16 3 C 0.09 2.30 0.57 3.67 0.00 2.31 16 4 C 0.10 2.42 6.10 71.98 0.44 2.86 16 5 O -0.57 -10.33 9.68 -148.98 -1.44 -11.77 16 6 C -0.11 -2.40 5.27 31.47 0.17 -2.24 16 7 C -0.12 -2.90 7.08 31.85 0.23 -2.67 16 8 C 0.04 1.27 5.66 86.71 0.49 1.76 16 9 N -0.52 -16.11 4.86 -838.29 -4.08 -20.18 16 10 C 0.12 4.05 3.78 85.56 0.32 4.38 16 11 C -0.19 -7.86 5.18 -19.67 -0.10 -7.96 16 12 C -0.09 -4.27 9.67 22.22 0.21 -4.06 16 13 C -0.18 -9.87 8.66 22.73 0.20 -9.68 16 14 C 0.08 4.32 5.55 -21.29 -0.12 4.20 16 15 C -0.51 -28.22 9.07 23.46 0.21 -28.01 16 16 H 0.07 3.89 7.87 -2.91 -0.02 3.86 16 17 C 0.03 1.66 5.26 85.26 0.45 2.11 16 18 N -0.84 -45.36 10.82 21.83 0.24 -45.13 16 19 Si 0.98 39.52 29.57 68.60 2.03 41.55 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 23 C -0.24 -11.92 9.80 22.73 0.22 -11.70 16 24 C -0.09 -3.73 8.78 22.22 0.20 -3.54 16 25 H 0.07 1.50 5.95 -2.39 -0.01 1.48 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 1.10 6.02 -2.39 -0.01 1.09 16 28 H 0.06 1.43 6.69 -2.39 -0.02 1.41 16 29 H 0.05 1.28 7.47 -2.38 -0.02 1.26 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.39 3.88 9.12 -74.06 -0.68 3.20 16 33 H 0.08 1.69 7.26 -2.39 -0.02 1.67 16 34 H 0.08 1.61 6.08 -2.39 -0.01 1.60 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.27 7.81 -2.39 -0.02 1.25 16 38 H 0.06 2.09 7.84 -2.39 -0.02 2.08 16 39 H 0.04 1.31 6.55 -2.39 -0.02 1.29 16 40 H 0.07 2.28 7.10 -2.39 -0.02 2.27 16 41 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 42 H 0.10 5.67 6.21 -2.91 -0.02 5.65 16 43 H 0.28 14.08 8.30 -92.71 -0.77 13.31 16 44 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 45 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -61.54 344.29 0.71 -60.83 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.30 Total: 32.06 kcal Atomic # 6 Polarization: -61.02 SS G_CDS: 3.66 Total: -57.36 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -3.84 Total: -65.31 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -1.44 Total: -11.77 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -61.54 0.71 -60.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439278471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.045 kcal (2) G-P(sol) polarization free energy of solvation -61.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds