Wall clock time and date at job start Tue Mar 31 2020 06:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46995 * 2 1 4 4 C 1.52999 * 110.06575 * 59.96227 * 3 2 1 5 5 O 1.42900 * 109.47076 * 180.61543 * 4 3 2 6 6 C 1.53993 * 109.91335 * 298.76045 * 3 2 1 7 7 C 1.54601 * 105.13694 * 239.42051 * 6 3 2 8 8 C 1.54933 * 102.92165 * 338.04518 * 7 6 3 9 9 N 1.47897 * 109.91775 * 181.17049 * 3 2 1 10 10 C 1.46896 * 111.00226 * 265.19741 * 9 3 2 11 11 C 1.50705 * 109.47498 * 176.64866 * 10 9 3 12 12 C 1.38635 * 119.74556 * 275.01612 * 11 10 9 13 13 C 1.37615 * 120.24569 * 179.76444 * 12 11 10 14 14 C 1.40719 * 119.74348 * 0.48218 * 13 12 11 15 15 C 1.41399 * 120.24214 * 179.79132 * 14 13 12 16 16 H 1.08003 * 119.99971 * 25.77745 * 15 14 13 17 17 C 1.39941 * 119.99835 * 205.78182 * 15 14 13 18 18 N 1.30820 * 120.00389 * 14.14298 * 17 15 14 19 19 Si 1.86806 * 119.99866 * 194.14259 * 17 15 14 20 20 H 1.48503 * 109.47109 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46945 * 120.00117 * 19 17 15 22 22 H 1.48498 * 109.47131 * 239.99837 * 19 17 15 23 23 C 1.40707 * 119.51324 * 359.77058 * 14 13 12 24 24 C 1.37616 * 119.74482 * 359.97438 * 23 14 13 25 25 H 1.09001 * 109.47083 * 301.43751 * 1 2 3 26 26 H 1.09000 * 109.47345 * 61.44237 * 1 2 3 27 27 H 1.09001 * 109.46736 * 181.44012 * 1 2 3 28 28 H 1.08995 * 109.47237 * 239.99864 * 2 1 3 29 29 H 1.09001 * 109.47301 * 119.99480 * 2 1 3 30 30 H 1.08992 * 109.47486 * 300.61552 * 4 3 2 31 31 H 1.08999 * 109.47201 * 60.61982 * 4 3 2 32 32 H 0.96697 * 113.99976 * 180.02562 * 5 4 3 33 33 H 1.08997 * 110.31144 * 120.50843 * 6 3 2 34 34 H 1.08999 * 110.39742 * 358.37974 * 6 3 2 35 35 H 1.08999 * 110.72341 * 219.68077 * 7 6 3 36 36 H 1.09007 * 110.87359 * 96.47948 * 7 6 3 37 37 H 1.08999 * 110.66493 * 278.97745 * 8 7 6 38 38 H 1.09004 * 110.66189 * 155.85046 * 8 7 6 39 39 H 1.09000 * 109.47298 * 56.64189 * 10 9 3 40 40 H 1.09007 * 109.46687 * 296.64643 * 10 9 3 41 41 H 1.08004 * 119.87417 * 359.97438 * 12 11 10 42 42 H 1.08001 * 120.12908 * 180.27589 * 13 12 11 43 43 H 0.97003 * 120.00710 * 180.02562 * 18 17 15 44 44 H 1.08006 * 120.12970 * 180.02562 * 23 14 13 45 45 H 1.08006 * 119.87657 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5367 2.1773 1.2441 5 8 2.0081 3.5261 1.2240 6 6 1.5580 2.1693 -1.2692 7 6 2.8487 2.6159 -1.9935 8 6 3.8985 2.6290 -0.8541 9 7 3.5186 1.4542 -0.0284 10 6 4.0704 1.5639 1.3286 11 6 5.5744 1.4899 1.2669 12 6 6.2022 0.2540 1.2523 13 6 7.5747 0.1744 1.1912 14 6 8.3414 1.3537 1.1538 15 6 9.7525 1.2842 1.0954 16 1 10.2333 0.4146 0.6724 17 6 10.5260 2.3423 1.5858 18 7 9.9768 3.2597 2.3396 19 14 12.3430 2.4448 1.1642 20 1 12.7169 1.2942 0.3029 21 1 12.6123 3.7128 0.4399 22 1 13.1440 2.4090 2.4141 23 6 7.6936 2.6026 1.1744 24 6 6.3197 2.6582 1.2303 25 1 -0.3633 0.5360 0.8768 26 1 -0.3634 0.4913 -0.9026 27 1 -0.3633 -1.0274 0.0258 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.4468 2.1734 1.2523 31 1 1.9085 1.6757 2.1376 32 1 1.7269 4.0524 1.9850 33 1 0.9545 3.0368 -1.0024 34 1 0.9851 1.4906 -1.9012 35 1 2.7277 3.6125 -2.4180 36 1 3.1277 1.9001 -2.7669 37 1 3.8239 3.5480 -0.2728 38 1 4.9043 2.5075 -1.2563 39 1 3.6912 0.7466 1.9421 40 1 3.7711 2.5162 1.7666 41 1 5.6118 -0.6498 1.2855 42 1 8.0616 -0.7895 1.1754 43 1 10.5128 3.9933 2.6793 44 1 8.2723 3.5141 1.1456 45 1 5.8202 3.6157 1.2458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439278476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:43 Heat of formation + Delta-G solvation = -33.168948 kcal Electronic energy + Delta-G solvation = -23751.707945 eV Core-core repulsion = 20540.258244 eV Total energy + Delta-G solvation = -3211.449701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.04410 -37.41093 -35.88000 -34.16816 -33.37831 -32.02752 -29.60046 -29.10684 -28.19918 -26.19702 -25.10481 -23.69139 -22.87234 -21.16561 -20.49991 -19.56315 -18.39265 -17.50175 -17.20673 -15.80586 -15.68981 -15.23190 -14.90434 -14.18710 -13.97196 -13.94081 -13.39396 -13.26754 -13.10850 -12.68172 -12.48802 -12.43887 -11.95864 -11.85271 -11.69992 -11.57156 -11.46603 -11.15480 -11.08282 -10.85365 -10.74695 -10.60945 -10.36690 -10.27054 -10.24978 -10.23272 -9.94154 -9.45148 -9.27265 -9.07758 -7.83109 -7.34036 -7.16803 -6.66078 -4.28075 2.80399 3.10814 3.16634 3.17415 3.23411 3.98698 4.13881 4.35283 4.70732 4.80425 5.02194 5.07073 5.19692 5.28359 5.31891 5.39024 5.49494 5.53529 5.73235 5.78193 5.85351 5.95374 6.01354 6.05043 6.08340 6.11599 6.18959 6.32001 6.35081 6.43025 6.48363 6.52490 6.57271 6.61043 7.03024 7.15444 7.33771 7.46227 7.50064 7.60354 7.62897 7.71903 7.99148 8.14704 8.25789 8.39625 8.73497 8.98458 9.06868 10.27666 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030578 B = 0.003660 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.477460 B = 7648.914688 C = 7815.201894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.100 4.100 3 C 0.094 3.906 4 C 0.055 3.945 5 O -0.561 6.561 6 C -0.113 4.113 7 C -0.123 4.123 8 C 0.050 3.950 9 N -0.495 5.495 10 C 0.106 3.894 11 C -0.201 4.201 12 C -0.073 4.073 13 C -0.227 4.227 14 C 0.110 3.890 15 C -0.463 4.463 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.800 5.800 19 Si 0.907 3.093 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.275 1.275 23 C -0.163 4.163 24 C -0.094 4.094 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.372 0.628 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.278 0.722 44 H 0.118 0.882 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.087 -0.233 -2.988 16.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.138 4.138 3 C 0.003 3.997 4 C -0.024 4.024 5 O -0.366 6.366 6 C -0.151 4.151 7 C -0.161 4.161 8 C -0.078 4.078 9 N -0.218 5.218 10 C -0.021 4.021 11 C -0.202 4.202 12 C -0.092 4.092 13 C -0.246 4.246 14 C 0.107 3.893 15 C -0.494 4.494 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.426 5.426 19 Si 0.732 3.268 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.201 1.201 23 C -0.183 4.183 24 C -0.113 4.113 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.219 0.781 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.136 0.864 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.539 -0.718 -3.621 15.971 hybrid contribution 0.302 0.993 0.951 1.408 sum -15.237 0.276 -2.670 15.471 Atomic orbital electron populations 1.21918 0.96178 1.01502 1.01722 1.21391 0.94455 0.94850 1.03084 1.21895 0.90279 0.94197 0.93310 1.22902 0.97132 0.83223 0.99137 1.86585 1.77607 1.23135 1.49279 1.22392 0.97826 0.99419 0.95482 1.22445 0.95105 1.00546 0.97989 1.23078 0.98613 0.92549 0.93553 1.64940 1.03995 1.39732 1.13180 1.21023 0.93175 0.99309 0.88592 1.18911 0.92235 0.93368 1.15733 1.20317 0.94070 0.95225 0.99581 1.20982 0.93228 0.97091 1.13348 1.17623 0.93122 0.90950 0.87564 1.19616 0.91348 1.02808 1.35597 0.90633 1.25880 1.00972 0.94585 0.92768 1.69822 1.38024 1.10709 1.24078 0.86285 0.82176 0.79232 0.79125 1.18494 1.19824 1.20093 1.21331 0.92458 0.98520 1.05945 1.20541 0.94382 0.95331 1.01003 0.92932 0.92510 0.92703 0.90699 0.91899 0.93740 0.93216 0.78128 0.91569 0.91616 0.91876 0.91507 0.92796 0.90391 0.92760 0.93556 0.89682 0.89274 0.91152 0.86408 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.34 37.15 0.35 -1.06 16 2 C -0.10 -1.17 5.20 -26.73 -0.14 -1.31 16 3 C 0.09 1.24 0.57 -130.53 -0.07 1.16 16 4 C 0.06 0.66 4.68 37.16 0.17 0.83 16 5 O -0.56 -7.02 9.55 -35.23 -0.34 -7.36 16 6 C -0.11 -1.39 5.38 -25.37 -0.14 -1.53 16 7 C -0.12 -1.68 7.06 -24.87 -0.18 -1.86 16 8 C 0.05 0.84 5.08 -1.90 -0.01 0.83 16 9 N -0.50 -8.28 4.90 -216.42 -1.06 -9.34 16 10 C 0.11 1.93 3.68 -4.98 -0.02 1.91 16 11 C -0.20 -4.47 4.91 -104.33 -0.51 -4.98 16 12 C -0.07 -1.70 9.69 -39.66 -0.38 -2.08 16 13 C -0.23 -5.76 9.80 -38.87 -0.38 -6.14 16 14 C 0.11 3.00 5.57 -106.82 -0.60 2.41 16 15 C -0.46 -12.64 9.07 -37.74 -0.34 -12.98 16 16 H 0.08 1.99 7.89 -52.48 -0.41 1.58 16 17 C 0.07 1.91 5.21 -17.35 -0.09 1.82 16 18 N -0.80 -21.15 10.83 55.55 0.60 -20.55 16 19 Si 0.91 19.13 29.58 -169.99 -5.03 14.10 16 20 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 23 C -0.16 -4.33 8.68 -38.88 -0.34 -4.67 16 24 C -0.09 -2.23 8.99 -39.66 -0.36 -2.59 16 25 H 0.05 0.45 6.39 -51.93 -0.33 0.12 16 26 H 0.06 0.49 6.63 -51.93 -0.34 0.14 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.04 0.45 6.42 -51.93 -0.33 0.11 16 31 H 0.05 0.62 6.51 -51.93 -0.34 0.28 16 32 H 0.37 3.13 9.12 45.56 0.42 3.54 16 33 H 0.07 0.80 7.39 -51.93 -0.38 0.42 16 34 H 0.07 0.72 6.51 -51.93 -0.34 0.38 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.05 0.96 6.67 -51.93 -0.35 0.61 16 38 H 0.08 1.49 7.98 -51.93 -0.41 1.08 16 39 H 0.05 0.96 7.54 -51.93 -0.39 0.57 16 40 H 0.05 0.84 5.37 -51.92 -0.28 0.56 16 41 H 0.08 1.80 8.06 -52.48 -0.42 1.37 16 42 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 43 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 44 H 0.12 3.25 6.12 -52.48 -0.32 2.93 16 45 H 0.08 1.84 8.06 -52.48 -0.42 1.41 16 LS Contribution 342.79 15.07 5.17 5.17 Total: -1.00 -28.90 342.79 -10.03 -38.93 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.34 Total: 9.28 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: -3.03 Total: -30.23 kcal Atomic # 7 Polarization: -29.43 SS G_CDS: -0.46 Total: -29.89 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.34 Total: -7.36 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.90 -10.03 -38.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439278476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.760 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds