Wall clock time and date at job start Tue Mar 31 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46995 * 2 1 4 4 C 1.52999 * 110.06575 * 59.96227 * 3 2 1 5 5 O 1.42900 * 109.47076 * 180.61543 * 4 3 2 6 6 C 1.53993 * 109.91335 * 298.76045 * 3 2 1 7 7 C 1.54601 * 105.13694 * 239.42051 * 6 3 2 8 8 C 1.54933 * 102.92165 * 338.04518 * 7 6 3 9 9 N 1.47897 * 109.91775 * 181.17049 * 3 2 1 10 10 C 1.46896 * 111.00226 * 265.19741 * 9 3 2 11 11 C 1.50705 * 109.47498 * 176.64866 * 10 9 3 12 12 C 1.38635 * 119.74556 * 275.01612 * 11 10 9 13 13 C 1.37615 * 120.24569 * 179.76444 * 12 11 10 14 14 C 1.40719 * 119.74348 * 0.48218 * 13 12 11 15 15 C 1.41399 * 120.24214 * 179.79132 * 14 13 12 16 16 H 1.08003 * 119.99971 * 25.77745 * 15 14 13 17 17 C 1.39941 * 119.99835 * 205.78182 * 15 14 13 18 18 N 1.30820 * 120.00389 * 14.14298 * 17 15 14 19 19 Si 1.86806 * 119.99866 * 194.14259 * 17 15 14 20 20 H 1.48503 * 109.47109 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46945 * 120.00117 * 19 17 15 22 22 H 1.48498 * 109.47131 * 239.99837 * 19 17 15 23 23 C 1.40707 * 119.51324 * 359.77058 * 14 13 12 24 24 C 1.37616 * 119.74482 * 359.97438 * 23 14 13 25 25 H 1.09001 * 109.47083 * 301.43751 * 1 2 3 26 26 H 1.09000 * 109.47345 * 61.44237 * 1 2 3 27 27 H 1.09001 * 109.46736 * 181.44012 * 1 2 3 28 28 H 1.08995 * 109.47237 * 239.99864 * 2 1 3 29 29 H 1.09001 * 109.47301 * 119.99480 * 2 1 3 30 30 H 1.08992 * 109.47486 * 300.61552 * 4 3 2 31 31 H 1.08999 * 109.47201 * 60.61982 * 4 3 2 32 32 H 0.96697 * 113.99976 * 180.02562 * 5 4 3 33 33 H 1.08997 * 110.31144 * 120.50843 * 6 3 2 34 34 H 1.08999 * 110.39742 * 358.37974 * 6 3 2 35 35 H 1.08999 * 110.72341 * 219.68077 * 7 6 3 36 36 H 1.09007 * 110.87359 * 96.47948 * 7 6 3 37 37 H 1.08999 * 110.66493 * 278.97745 * 8 7 6 38 38 H 1.09004 * 110.66189 * 155.85046 * 8 7 6 39 39 H 1.09000 * 109.47298 * 56.64189 * 10 9 3 40 40 H 1.09007 * 109.46687 * 296.64643 * 10 9 3 41 41 H 1.08004 * 119.87417 * 359.97438 * 12 11 10 42 42 H 1.08001 * 120.12908 * 180.27589 * 13 12 11 43 43 H 0.97003 * 120.00710 * 180.02562 * 18 17 15 44 44 H 1.08006 * 120.12970 * 180.02562 * 23 14 13 45 45 H 1.08006 * 119.87657 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5367 2.1773 1.2441 5 8 2.0081 3.5261 1.2240 6 6 1.5580 2.1693 -1.2692 7 6 2.8487 2.6159 -1.9935 8 6 3.8985 2.6290 -0.8541 9 7 3.5186 1.4542 -0.0284 10 6 4.0704 1.5639 1.3286 11 6 5.5744 1.4899 1.2669 12 6 6.2022 0.2540 1.2523 13 6 7.5747 0.1744 1.1912 14 6 8.3414 1.3537 1.1538 15 6 9.7525 1.2842 1.0954 16 1 10.2333 0.4146 0.6724 17 6 10.5260 2.3423 1.5858 18 7 9.9768 3.2597 2.3396 19 14 12.3430 2.4448 1.1642 20 1 12.7169 1.2942 0.3029 21 1 12.6123 3.7128 0.4399 22 1 13.1440 2.4090 2.4141 23 6 7.6936 2.6026 1.1744 24 6 6.3197 2.6582 1.2303 25 1 -0.3633 0.5360 0.8768 26 1 -0.3634 0.4913 -0.9026 27 1 -0.3633 -1.0274 0.0258 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.4468 2.1734 1.2523 31 1 1.9085 1.6757 2.1376 32 1 1.7269 4.0524 1.9850 33 1 0.9545 3.0368 -1.0024 34 1 0.9851 1.4906 -1.9012 35 1 2.7277 3.6125 -2.4180 36 1 3.1277 1.9001 -2.7669 37 1 3.8239 3.5480 -0.2728 38 1 4.9043 2.5075 -1.2563 39 1 3.6912 0.7466 1.9421 40 1 3.7711 2.5162 1.7666 41 1 5.6118 -0.6498 1.2855 42 1 8.0616 -0.7895 1.1754 43 1 10.5128 3.9933 2.6793 44 1 8.2723 3.5141 1.1456 45 1 5.8202 3.6157 1.2458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439278476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:42 Heat of formation + Delta-G solvation = -50.912091 kcal Electronic energy + Delta-G solvation = -23752.477346 eV Core-core repulsion = 20540.258244 eV Total energy + Delta-G solvation = -3212.219101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20102 -39.27115 -36.86960 -35.85558 -34.62216 -33.45908 -31.36245 -31.00041 -29.19581 -27.92060 -26.11262 -25.23789 -23.93268 -22.95955 -22.15112 -21.17488 -19.45559 -19.19779 -18.42168 -17.20642 -16.90547 -16.86014 -16.07898 -15.74301 -15.65135 -15.06161 -15.00837 -14.65675 -14.22249 -14.06931 -13.80728 -13.67803 -13.58570 -13.32141 -13.25340 -12.99068 -12.74631 -12.50868 -12.40959 -12.29871 -12.18180 -11.90441 -11.86892 -11.83653 -11.34745 -11.29922 -11.19359 -11.18497 -11.03028 -10.83606 -9.34823 -9.20477 -9.02168 -8.59144 -6.32388 0.96407 1.18093 1.37237 1.49988 1.52641 2.21575 2.71393 3.15946 3.34904 3.73302 3.81900 3.96306 4.02478 4.28781 4.34978 4.38967 4.40928 4.44958 4.51318 4.54927 4.61074 4.65048 4.72463 4.82782 4.85605 4.95888 5.02106 5.06950 5.08423 5.13639 5.18057 5.23391 5.26835 5.33592 5.41451 5.45139 5.50986 5.51261 5.73997 5.98784 6.12171 6.14492 6.34986 6.36560 6.42520 6.73441 6.88278 6.97026 7.06829 8.37182 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030578 B = 0.003660 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.477460 B = 7648.914688 C = 7815.201894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C 0.088 3.912 4 C 0.057 3.943 5 O -0.580 6.580 6 C -0.106 4.106 7 C -0.119 4.119 8 C 0.050 3.950 9 N -0.508 5.508 10 C 0.116 3.884 11 C -0.189 4.189 12 C -0.076 4.076 13 C -0.242 4.242 14 C 0.077 3.923 15 C -0.503 4.503 16 H 0.072 0.928 17 C 0.033 3.967 18 N -0.832 5.832 19 Si 0.983 3.017 20 H -0.259 1.259 21 H -0.264 1.264 22 H -0.265 1.265 23 C -0.186 4.186 24 C -0.095 4.095 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.390 0.610 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.286 0.714 44 H 0.100 0.900 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.167 -0.412 -3.239 18.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.136 4.136 3 C -0.002 4.002 4 C -0.022 4.022 5 O -0.388 6.388 6 C -0.144 4.144 7 C -0.157 4.157 8 C -0.078 4.078 9 N -0.231 5.231 10 C -0.011 4.011 11 C -0.190 4.190 12 C -0.095 4.095 13 C -0.262 4.262 14 C 0.075 3.925 15 C -0.533 4.533 16 H 0.090 0.910 17 C -0.181 4.181 18 N -0.459 5.459 19 Si 0.804 3.196 20 H -0.183 1.183 21 H -0.189 1.189 22 H -0.190 1.190 23 C -0.205 4.205 24 C -0.114 4.114 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.239 0.761 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.128 0.872 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.118 0.882 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.651 -0.898 -3.861 18.091 hybrid contribution 0.798 1.043 1.036 1.672 sum -16.854 0.145 -2.825 17.089 Atomic orbital electron populations 1.21870 0.93774 1.02511 1.02509 1.21381 0.96467 0.93490 1.02251 1.22074 0.87725 0.95664 0.94707 1.22865 0.98582 0.82841 0.97901 1.86533 1.78150 1.23551 1.50591 1.22381 0.97083 0.99947 0.94984 1.22422 0.94836 1.01441 0.96964 1.22969 0.97995 0.92176 0.94673 1.64839 1.06846 1.39588 1.11829 1.20889 0.90187 1.00004 0.90033 1.19360 0.94730 0.92359 1.12563 1.20607 0.93479 0.96645 0.98769 1.21184 0.94357 0.96812 1.13846 1.17951 0.93888 0.91838 0.88793 1.19846 0.91936 1.03974 1.37535 0.91019 1.26745 1.05742 0.93662 0.91940 1.69879 1.40056 1.11321 1.24619 0.85145 0.75952 0.79356 0.79127 1.18301 1.18902 1.18958 1.21276 0.93568 0.97760 1.07914 1.20696 0.93556 0.96662 1.00436 0.92080 0.91710 0.91695 0.91651 0.92708 0.91107 0.93760 0.76106 0.90815 0.89791 0.90679 0.91492 0.93866 0.93727 0.91646 0.93172 0.87214 0.88835 0.90357 0.88248 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.34 71.98 0.67 -1.48 16 2 C -0.10 -2.03 5.20 30.59 0.16 -1.87 16 3 C 0.09 2.10 0.57 3.67 0.00 2.10 16 4 C 0.06 1.18 4.68 71.98 0.34 1.52 16 5 O -0.58 -13.12 9.55 -148.98 -1.42 -14.54 16 6 C -0.11 -2.29 5.38 31.47 0.17 -2.12 16 7 C -0.12 -3.05 7.06 31.80 0.22 -2.83 16 8 C 0.05 1.66 5.08 86.65 0.44 2.10 16 9 N -0.51 -16.31 4.90 -838.62 -4.11 -20.42 16 10 C 0.12 4.09 3.68 85.56 0.31 4.41 16 11 C -0.19 -8.38 4.91 -19.67 -0.10 -8.48 16 12 C -0.08 -3.55 9.69 22.22 0.22 -3.33 16 13 C -0.24 -12.64 9.80 22.73 0.22 -12.42 16 14 C 0.08 4.42 5.57 -21.29 -0.12 4.30 16 15 C -0.50 -28.57 9.07 23.46 0.21 -28.36 16 16 H 0.07 3.95 7.89 -2.91 -0.02 3.93 16 17 C 0.03 1.72 5.21 85.26 0.44 2.16 16 18 N -0.83 -45.35 10.83 21.82 0.24 -45.12 16 19 Si 0.98 39.90 29.58 68.60 2.03 41.93 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 21 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 23 C -0.19 -10.30 8.68 22.73 0.20 -10.11 16 24 C -0.09 -4.62 8.99 22.22 0.20 -4.42 16 25 H 0.06 0.79 6.39 -2.39 -0.02 0.77 16 26 H 0.06 0.85 6.63 -2.39 -0.02 0.83 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.13 6.42 -2.39 -0.02 1.11 16 31 H 0.04 0.97 6.51 -2.39 -0.02 0.96 16 32 H 0.39 5.59 9.12 -74.06 -0.68 4.91 16 33 H 0.07 1.51 7.39 -2.39 -0.02 1.50 16 34 H 0.08 1.53 6.51 -2.39 -0.02 1.51 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.04 1.52 6.67 -2.39 -0.02 1.51 16 38 H 0.04 1.75 7.98 -2.39 -0.02 1.73 16 39 H 0.07 2.17 7.54 -2.39 -0.02 2.16 16 40 H 0.05 1.75 5.37 -2.38 -0.01 1.74 16 41 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 42 H 0.09 4.65 8.06 -2.91 -0.02 4.62 16 43 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 44 H 0.10 5.79 6.12 -2.91 -0.02 5.78 16 45 H 0.09 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -64.35 342.79 0.64 -63.71 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: 0.31 Total: 33.25 kcal Atomic # 6 Polarization: -62.41 SS G_CDS: 3.60 Total: -58.81 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -3.87 Total: -65.54 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.42 Total: -14.54 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -64.35 0.64 -63.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439278476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.797 kcal (2) G-P(sol) polarization free energy of solvation -64.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds