Wall clock time and date at job start Tue Mar 31 2020 05:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 116.99570 * 2 1 4 4 C 1.38751 * 120.05909 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94248 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.97046 * 179.97438 * 5 4 3 7 7 C 1.38293 * 120.05651 * 0.02562 * 5 4 3 8 8 C 1.38246 * 120.11179 * 359.69360 * 7 5 4 9 9 C 1.38171 * 120.05179 * 0.56152 * 8 7 5 10 10 C 1.50695 * 120.02324 * 179.74135 * 9 8 7 11 11 N 1.46499 * 109.47423 * 259.72369 * 10 9 8 12 12 C 1.36945 * 119.99860 * 270.00041 * 11 10 9 13 13 H 1.07998 * 119.99571 * 140.12855 * 12 11 10 14 14 C 1.38809 * 120.00276 * 320.13631 * 12 11 10 15 15 N 1.31625 * 119.99493 * 341.85041 * 14 12 11 16 16 Si 1.86797 * 120.00135 * 161.85404 * 14 12 11 17 17 H 1.48491 * 109.47307 * 89.99758 * 16 14 12 18 18 H 1.48509 * 109.46884 * 210.00001 * 16 14 12 19 19 H 1.48501 * 109.47244 * 329.99298 * 16 14 12 20 20 C 1.46498 * 120.00232 * 90.00031 * 11 10 9 21 21 C 1.54967 * 110.92353 * 129.47299 * 20 11 10 22 22 C 1.54260 * 104.16105 * 156.29843 * 21 20 11 23 23 C 1.53873 * 106.63948 * 336.44219 * 22 21 20 24 24 C 1.54274 * 106.59965 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47504 * 299.99756 * 1 2 3 26 26 H 1.09007 * 109.47288 * 59.99809 * 1 2 3 27 27 H 1.08998 * 109.47147 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.02803 * 359.97438 * 4 3 2 29 29 H 1.09004 * 109.46917 * 90.00538 * 6 5 4 30 30 H 1.08998 * 109.47326 * 210.00037 * 6 5 4 31 31 H 1.08993 * 109.47167 * 330.00274 * 6 5 4 32 32 H 1.07996 * 119.94388 * 179.97438 * 7 5 4 33 33 H 1.07998 * 119.97431 * 180.27808 * 8 7 5 34 34 H 1.09006 * 109.47274 * 139.72346 * 10 9 8 35 35 H 1.08996 * 109.47316 * 19.72489 * 10 9 8 36 36 H 0.96999 * 119.99285 * 180.02562 * 15 14 12 37 37 H 1.08994 * 110.67042 * 6.16480 * 20 11 10 38 38 H 1.09005 * 110.47573 * 37.63847 * 21 20 11 39 39 H 1.08995 * 110.52761 * 274.97868 * 21 20 11 40 40 H 1.08998 * 110.02983 * 217.13715 * 22 21 20 41 41 H 1.08998 * 110.03635 * 95.75322 * 22 21 20 42 42 H 1.09001 * 110.03235 * 119.25973 * 23 22 21 43 43 H 1.09002 * 110.03545 * 240.64212 * 23 22 21 44 44 H 1.08998 * 110.48288 * 142.28883 * 24 23 22 45 45 H 1.09003 * 110.48364 * 264.80023 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 1.1018 4.8698 -0.0022 7 6 3.3019 3.6758 -0.0016 8 6 4.0559 2.5171 0.0048 9 6 3.4310 1.2848 0.0000 10 6 4.2537 0.0222 0.0011 11 7 4.3194 -0.5191 -1.3587 12 6 3.3715 -1.4094 -1.7877 13 1 2.9842 -1.3428 -2.7937 14 6 2.9085 -2.3975 -0.9298 15 7 3.6024 -2.7161 0.1424 16 14 1.3008 -3.2750 -1.2968 17 1 1.5702 -4.4734 -2.1312 18 1 0.6625 -3.6923 -0.0225 19 1 0.3914 -2.3567 -2.0283 20 6 5.3991 -0.1078 -2.2594 21 6 6.0923 -1.3412 -2.8916 22 6 6.7188 -0.7967 -4.1919 23 6 5.9176 0.4600 -4.5744 24 6 4.8309 0.6358 -3.4936 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2127 2.3204 -0.0014 29 1 0.9040 5.1755 1.0252 30 1 1.6516 5.6581 -0.5163 31 1 0.1575 4.6909 -0.5163 32 1 3.7921 4.6380 -0.0024 33 1 5.1343 2.5752 0.0089 34 1 3.7924 -0.7115 0.6623 35 1 5.2611 0.2452 0.3524 36 1 3.2790 -3.4069 0.7417 37 1 6.1233 0.5140 -1.7332 38 1 5.3599 -2.1167 -3.1165 39 1 6.8659 -1.7269 -2.2278 40 1 6.6438 -1.5425 -4.9832 41 1 7.7636 -0.5362 -4.0224 42 1 6.5733 1.3306 -4.5897 43 1 5.4545 0.3245 -5.5518 44 1 4.6844 1.6922 -3.2684 45 1 3.8941 0.1821 -3.8171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449026090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:05 Heat of formation + Delta-G solvation = -2.988893 kcal Electronic energy + Delta-G solvation = -24570.319888 eV Core-core repulsion = 21360.178892 eV Total energy + Delta-G solvation = -3210.140996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.53568 -37.52684 -36.82549 -34.52434 -32.33710 -30.69005 -29.45248 -28.02597 -27.78335 -26.86505 -26.14419 -24.40377 -22.12626 -21.53781 -20.14567 -19.46074 -19.24029 -16.88595 -16.16690 -15.71329 -15.24280 -15.04324 -14.75022 -14.59780 -14.06108 -13.74635 -13.41581 -13.26604 -13.18769 -12.74135 -12.51519 -12.29456 -12.07739 -11.71461 -11.55825 -11.18456 -11.04902 -10.86771 -10.81407 -10.61888 -10.54228 -10.32993 -10.26086 -10.24510 -9.97748 -9.88696 -9.77950 -9.65478 -9.35838 -8.30086 -8.08897 -7.28604 -6.36874 -5.63795 -3.21717 1.97246 2.14678 3.38300 3.45983 3.48908 4.11588 4.38395 4.62018 5.20598 5.30946 5.40666 5.45073 5.47674 5.50894 5.56192 5.59345 5.66072 5.74288 5.76499 5.91677 5.96183 5.96839 6.03951 6.21666 6.26176 6.27207 6.30632 6.32070 6.47908 6.60246 6.62083 6.67023 6.67837 6.76283 6.89857 7.05542 7.11826 7.15060 7.23544 7.29274 7.43604 7.54866 7.81962 7.97405 8.27413 8.69912 9.34519 9.97432 10.55047 11.37204 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.008437 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.071394 B = 3317.957595 C = 4955.815078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.267 6.267 3 C 0.152 3.848 4 C -0.221 4.221 5 C -0.075 4.075 6 C -0.106 4.106 7 C -0.167 4.167 8 C -0.088 4.088 9 C -0.108 4.108 10 C 0.183 3.817 11 N -0.563 5.563 12 C -0.237 4.237 13 H 0.052 0.948 14 C 0.036 3.964 15 N -0.886 5.886 16 Si 0.886 3.114 17 H -0.293 1.293 18 H -0.291 1.291 19 H -0.278 1.278 20 C 0.175 3.825 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.136 4.136 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.029 0.971 36 H 0.251 0.749 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.046 0.954 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.471 9.926 -1.169 10.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.178 6.178 3 C 0.105 3.895 4 C -0.240 4.240 5 C -0.075 4.075 6 C -0.163 4.163 7 C -0.185 4.185 8 C -0.107 4.107 9 C -0.112 4.112 10 C 0.058 3.942 11 N -0.280 5.280 12 C -0.367 4.367 13 H 0.069 0.931 14 C -0.164 4.164 15 N -0.529 5.529 16 Si 0.716 3.284 17 H -0.221 1.221 18 H -0.217 1.217 19 H -0.204 1.204 20 C 0.067 3.933 21 C -0.165 4.165 22 C -0.161 4.161 23 C -0.158 4.158 24 C -0.175 4.175 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.133 0.867 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.412 9.551 -1.024 9.709 hybrid contribution -1.268 -0.235 -0.281 1.319 sum -2.680 9.317 -1.304 9.782 Atomic orbital electron populations 1.22922 0.81277 1.02761 0.99965 1.86526 1.18487 1.25408 1.87356 1.18895 0.92182 0.83991 0.94389 1.20985 0.99079 0.92252 1.11677 1.19419 0.93846 0.93949 1.00300 1.20694 0.99064 0.95055 1.01497 1.20708 0.93087 0.97777 1.06930 1.20804 0.99053 0.91388 0.99414 1.20608 0.91842 0.98040 1.00661 1.19916 0.94621 0.90198 0.89510 1.43670 1.26578 1.47658 1.10112 1.18656 1.14157 1.05418 0.98472 0.93052 1.24963 0.97738 0.95769 0.97962 1.69910 1.36721 1.31094 1.15164 0.86623 0.85419 0.79313 0.76995 1.22081 1.21682 1.20387 1.21351 0.89140 0.92855 0.89956 1.22645 0.99330 1.00157 0.94375 1.22085 0.98357 0.97025 0.98632 1.22050 0.97825 0.97325 0.98640 1.22771 0.98417 0.99534 0.96813 0.93794 0.93473 0.89577 0.86724 0.91894 0.92070 0.92293 0.87332 0.86622 0.87476 0.95256 0.93855 0.93203 0.90224 0.93215 0.93079 0.93204 0.93166 0.93175 0.93493 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.67 101.05 0.98 1.44 16 2 O -0.27 -5.85 7.28 -19.43 -0.14 -5.99 16 3 C 0.15 3.17 6.66 -39.22 -0.26 2.90 16 4 C -0.22 -3.93 8.69 -39.43 -0.34 -4.27 16 5 C -0.07 -1.20 5.88 -104.64 -0.62 -1.82 16 6 C -0.11 -1.30 10.01 36.01 0.36 -0.94 16 7 C -0.17 -2.72 9.70 -39.56 -0.38 -3.10 16 8 C -0.09 -1.59 9.67 -39.60 -0.38 -1.97 16 9 C -0.11 -2.27 5.48 -104.47 -0.57 -2.84 16 10 C 0.18 4.29 5.10 -5.20 -0.03 4.27 16 11 N -0.56 -13.51 2.46 -164.72 -0.40 -13.92 16 12 C -0.24 -6.21 6.84 -15.06 -0.10 -6.32 16 13 H 0.05 1.40 6.88 -52.49 -0.36 1.04 16 14 C 0.04 0.96 3.99 -17.43 -0.07 0.89 16 15 N -0.89 -24.81 11.43 55.49 0.63 -24.18 16 16 Si 0.89 21.46 27.99 -169.99 -4.76 16.70 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.17 3.67 3.43 -65.90 -0.23 3.45 16 21 C -0.13 -2.55 6.33 -25.03 -0.16 -2.71 16 22 C -0.12 -2.04 6.80 -25.62 -0.17 -2.21 16 23 C -0.12 -1.96 6.80 -25.61 -0.17 -2.13 16 24 C -0.14 -2.62 6.40 -25.07 -0.16 -2.78 16 25 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 26 H 0.05 0.76 7.66 -51.93 -0.40 0.36 16 27 H 0.09 1.49 7.11 -51.93 -0.37 1.12 16 28 H 0.11 1.80 6.30 -52.49 -0.33 1.47 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 31 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.12 1.91 8.03 -52.49 -0.42 1.48 16 34 H 0.11 2.86 5.27 -51.93 -0.27 2.59 16 35 H 0.03 0.65 7.77 -51.93 -0.40 0.25 16 36 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.05 1.01 7.84 -51.93 -0.41 0.60 16 38 H 0.08 1.83 7.02 -51.93 -0.36 1.46 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.07 1.44 6.78 -51.93 -0.35 1.09 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -28.16 349.77 -9.15 -37.31 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.44 Total: 2.94 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -2.31 Total: -18.13 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.23 Total: -38.10 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.14 Total: -5.99 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.76 Total: 16.70 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.16 -9.15 -37.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449026090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.322 kcal (2) G-P(sol) polarization free energy of solvation -28.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds