Wall clock time and date at job start Tue Mar 31 2020 05:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 116.99570 * 2 1 4 4 C 1.38751 * 120.05909 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94248 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.97046 * 179.97438 * 5 4 3 7 7 C 1.38293 * 120.05651 * 0.02562 * 5 4 3 8 8 C 1.38246 * 120.11179 * 359.69360 * 7 5 4 9 9 C 1.38171 * 120.05179 * 0.56152 * 8 7 5 10 10 C 1.50695 * 120.02324 * 179.74135 * 9 8 7 11 11 N 1.46499 * 109.47423 * 259.72369 * 10 9 8 12 12 C 1.36945 * 119.99860 * 270.00041 * 11 10 9 13 13 H 1.07998 * 119.99571 * 140.12855 * 12 11 10 14 14 C 1.38809 * 120.00276 * 320.13631 * 12 11 10 15 15 N 1.31625 * 119.99493 * 341.85041 * 14 12 11 16 16 Si 1.86797 * 120.00135 * 161.85404 * 14 12 11 17 17 H 1.48491 * 109.47307 * 89.99758 * 16 14 12 18 18 H 1.48509 * 109.46884 * 210.00001 * 16 14 12 19 19 H 1.48501 * 109.47244 * 329.99298 * 16 14 12 20 20 C 1.46498 * 120.00232 * 90.00031 * 11 10 9 21 21 C 1.54967 * 110.92353 * 129.47299 * 20 11 10 22 22 C 1.54260 * 104.16105 * 156.29843 * 21 20 11 23 23 C 1.53873 * 106.63948 * 336.44219 * 22 21 20 24 24 C 1.54274 * 106.59965 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47504 * 299.99756 * 1 2 3 26 26 H 1.09007 * 109.47288 * 59.99809 * 1 2 3 27 27 H 1.08998 * 109.47147 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.02803 * 359.97438 * 4 3 2 29 29 H 1.09004 * 109.46917 * 90.00538 * 6 5 4 30 30 H 1.08998 * 109.47326 * 210.00037 * 6 5 4 31 31 H 1.08993 * 109.47167 * 330.00274 * 6 5 4 32 32 H 1.07996 * 119.94388 * 179.97438 * 7 5 4 33 33 H 1.07998 * 119.97431 * 180.27808 * 8 7 5 34 34 H 1.09006 * 109.47274 * 139.72346 * 10 9 8 35 35 H 1.08996 * 109.47316 * 19.72489 * 10 9 8 36 36 H 0.96999 * 119.99285 * 180.02562 * 15 14 12 37 37 H 1.08994 * 110.67042 * 6.16480 * 20 11 10 38 38 H 1.09005 * 110.47573 * 37.63847 * 21 20 11 39 39 H 1.08995 * 110.52761 * 274.97868 * 21 20 11 40 40 H 1.08998 * 110.02983 * 217.13715 * 22 21 20 41 41 H 1.08998 * 110.03635 * 95.75322 * 22 21 20 42 42 H 1.09001 * 110.03235 * 119.25973 * 23 22 21 43 43 H 1.09002 * 110.03545 * 240.64212 * 23 22 21 44 44 H 1.08998 * 110.48288 * 142.28883 * 24 23 22 45 45 H 1.09003 * 110.48364 * 264.80023 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 1.1018 4.8698 -0.0022 7 6 3.3019 3.6758 -0.0016 8 6 4.0559 2.5171 0.0048 9 6 3.4310 1.2848 0.0000 10 6 4.2537 0.0222 0.0011 11 7 4.3194 -0.5191 -1.3587 12 6 3.3715 -1.4094 -1.7877 13 1 2.9842 -1.3428 -2.7937 14 6 2.9085 -2.3975 -0.9298 15 7 3.6024 -2.7161 0.1424 16 14 1.3008 -3.2750 -1.2968 17 1 1.5702 -4.4734 -2.1312 18 1 0.6625 -3.6923 -0.0225 19 1 0.3914 -2.3567 -2.0283 20 6 5.3991 -0.1078 -2.2594 21 6 6.0923 -1.3412 -2.8916 22 6 6.7188 -0.7967 -4.1919 23 6 5.9176 0.4600 -4.5744 24 6 4.8309 0.6358 -3.4936 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2127 2.3204 -0.0014 29 1 0.9040 5.1755 1.0252 30 1 1.6516 5.6581 -0.5163 31 1 0.1575 4.6909 -0.5163 32 1 3.7921 4.6380 -0.0024 33 1 5.1343 2.5752 0.0089 34 1 3.7924 -0.7115 0.6623 35 1 5.2611 0.2452 0.3524 36 1 3.2790 -3.4069 0.7417 37 1 6.1233 0.5140 -1.7332 38 1 5.3599 -2.1167 -3.1165 39 1 6.8659 -1.7269 -2.2278 40 1 6.6438 -1.5425 -4.9832 41 1 7.7636 -0.5362 -4.0224 42 1 6.5733 1.3306 -4.5897 43 1 5.4545 0.3245 -5.5518 44 1 4.6844 1.6922 -3.2684 45 1 3.8941 0.1821 -3.8171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449026090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:04 Heat of formation + Delta-G solvation = -16.339332 kcal Electronic energy + Delta-G solvation = -24570.898806 eV Core-core repulsion = 21360.178892 eV Total energy + Delta-G solvation = -3210.719914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.98121 -39.13976 -38.24550 -36.20337 -33.89940 -32.47560 -30.83995 -29.39108 -29.31258 -28.28434 -27.86980 -26.01433 -23.77093 -22.94517 -21.60639 -21.03498 -20.84416 -18.44082 -17.91745 -17.29588 -16.79086 -16.55841 -16.30187 -16.16272 -15.81563 -15.11242 -15.02502 -14.56808 -14.36083 -14.34439 -14.07052 -13.81597 -13.31299 -13.09328 -13.08534 -12.79788 -12.77487 -12.50662 -12.43736 -12.24883 -12.09260 -11.91164 -11.75661 -11.73412 -11.62710 -11.56497 -11.43109 -11.11175 -11.07301 -10.32185 -9.47306 -8.73533 -8.32467 -7.64773 -5.26572 0.58562 0.75398 1.41166 1.44103 1.52380 2.57282 2.73985 2.99271 3.48588 3.80494 3.98215 4.04315 4.06174 4.06842 4.24508 4.32003 4.34884 4.38325 4.51762 4.58615 4.64773 4.66959 4.78494 4.87953 4.89481 4.92071 4.95110 4.95610 4.97768 5.01607 5.08629 5.23001 5.26124 5.31709 5.40630 5.59286 5.65247 5.66193 5.68062 5.74016 5.79921 5.86346 5.98963 6.17712 6.64630 6.85058 7.36490 8.04870 8.57509 9.31592 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.008437 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.071394 B = 3317.957595 C = 4955.815078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.304 6.304 3 C 0.127 3.873 4 C -0.225 4.225 5 C -0.069 4.069 6 C -0.104 4.104 7 C -0.164 4.164 8 C -0.088 4.088 9 C -0.139 4.139 10 C 0.192 3.808 11 N -0.575 5.575 12 C -0.225 4.225 13 H 0.035 0.965 14 C 0.000 4.000 15 N -0.915 5.915 16 Si 0.926 3.074 17 H -0.299 1.299 18 H -0.292 1.292 19 H -0.269 1.269 20 C 0.166 3.834 21 C -0.125 4.125 22 C -0.113 4.113 23 C -0.112 4.112 24 C -0.126 4.126 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.142 0.858 33 H 0.128 0.872 34 H 0.071 0.929 35 H 0.027 0.973 36 H 0.244 0.756 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.040 0.960 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 13.115 -2.206 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.216 6.216 3 C 0.080 3.920 4 C -0.244 4.244 5 C -0.069 4.069 6 C -0.161 4.161 7 C -0.182 4.182 8 C -0.107 4.107 9 C -0.142 4.142 10 C 0.066 3.934 11 N -0.293 5.293 12 C -0.355 4.355 13 H 0.053 0.947 14 C -0.197 4.197 15 N -0.560 5.560 16 Si 0.756 3.244 17 H -0.227 1.227 18 H -0.218 1.218 19 H -0.194 1.194 20 C 0.059 3.941 21 C -0.164 4.164 22 C -0.152 4.152 23 C -0.150 4.150 24 C -0.166 4.166 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.151 0.849 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.160 0.840 33 H 0.146 0.854 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.515 12.771 -2.077 13.027 hybrid contribution -1.234 -1.106 0.070 1.659 sum -2.750 11.664 -2.007 12.151 Atomic orbital electron populations 1.23082 0.79627 1.02996 1.01706 1.86450 1.20535 1.26767 1.87895 1.19176 0.92458 0.84624 0.95713 1.21238 0.99992 0.91906 1.11259 1.19964 0.94370 0.94971 0.97623 1.20769 0.99020 0.93256 1.03019 1.21084 0.93334 0.98361 1.05454 1.20982 0.99925 0.91059 0.98715 1.20433 0.92122 0.97804 1.03859 1.19610 0.94498 0.90761 0.88544 1.43810 1.27111 1.47865 1.10560 1.18558 1.14137 1.05273 0.97576 0.94749 1.25348 0.99708 0.96603 0.98074 1.70033 1.37898 1.31935 1.16140 0.85973 0.83406 0.78352 0.76621 1.22672 1.21785 1.19419 1.21552 0.88812 0.93476 0.90287 1.22553 0.98355 0.99008 0.96483 1.22029 0.99341 0.97282 0.96498 1.22018 0.97021 0.98075 0.97866 1.22606 0.98111 0.98952 0.96909 0.91294 0.92341 0.90163 0.84865 0.90172 0.90221 0.91326 0.83974 0.85439 0.91170 0.95476 0.94630 0.92347 0.93794 0.94069 0.92089 0.90825 0.90566 0.91925 0.93130 0.94380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 9.67 113.37 1.10 1.83 16 2 O -0.30 -13.68 7.28 -92.44 -0.67 -14.35 16 3 C 0.13 5.29 6.66 22.51 0.15 5.44 16 4 C -0.23 -7.60 8.69 22.36 0.19 -7.40 16 5 C -0.07 -1.99 5.88 -19.88 -0.12 -2.11 16 6 C -0.10 -2.05 10.01 71.24 0.71 -1.34 16 7 C -0.16 -4.82 9.70 22.28 0.22 -4.61 16 8 C -0.09 -3.08 9.67 22.26 0.22 -2.86 16 9 C -0.14 -5.92 5.48 -19.77 -0.11 -6.02 16 10 C 0.19 9.36 5.10 85.63 0.44 9.80 16 11 N -0.58 -28.63 2.46 -675.06 -1.66 -30.29 16 12 C -0.22 -12.29 6.84 84.03 0.57 -11.71 16 13 H 0.03 1.98 6.88 -2.91 -0.02 1.96 16 14 C 0.00 0.00 3.99 84.86 0.34 0.33 16 15 N -0.92 -53.92 11.43 21.65 0.25 -53.67 16 16 Si 0.93 45.58 27.99 68.60 1.92 47.50 16 17 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 18 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 19 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 20 C 0.17 7.03 3.43 46.31 0.16 7.19 16 21 C -0.12 -5.11 6.33 31.69 0.20 -4.91 16 22 C -0.11 -3.53 6.80 31.32 0.21 -3.32 16 23 C -0.11 -3.34 6.80 31.32 0.21 -3.13 16 24 C -0.13 -4.78 6.40 31.67 0.20 -4.58 16 25 H 0.07 1.97 7.66 -2.39 -0.02 1.96 16 26 H 0.06 1.83 7.66 -2.38 -0.02 1.81 16 27 H 0.08 2.80 7.11 -2.39 -0.02 2.79 16 28 H 0.13 3.87 6.30 -2.91 -0.02 3.85 16 29 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 31 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 32 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 33 H 0.13 4.02 8.03 -2.91 -0.02 4.00 16 34 H 0.07 3.98 5.27 -2.38 -0.01 3.97 16 35 H 0.03 1.26 7.77 -2.39 -0.02 1.24 16 36 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 37 H 0.06 2.35 7.84 -2.39 -0.02 2.33 16 38 H 0.04 2.09 7.02 -2.38 -0.02 2.08 16 39 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.04 1.65 6.78 -2.39 -0.02 1.63 16 Total: -1.00 -64.36 349.77 5.49 -58.87 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.95 Total: 19.35 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 4.70 Total: -27.41 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -1.41 Total: -83.96 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.67 Total: -14.35 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.92 Total: 47.50 kcal Total: -64.36 5.49 -58.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449026090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.529 kcal (2) G-P(sol) polarization free energy of solvation -64.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds