Wall clock time and date at job start Tue Mar 31 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46697 * 2 1 4 4 N 1.46900 * 115.54927 * 56.92994 * 3 2 1 5 5 C 1.46900 * 110.99926 * 65.31483 * 4 3 2 6 6 C 1.50699 * 109.47152 * 175.01734 * 5 4 3 7 7 C 1.38289 * 119.97031 * 89.99828 * 6 5 4 8 8 C 1.38243 * 120.11076 * 179.70244 * 7 6 5 9 9 C 1.38167 * 120.05636 * 0.25230 * 8 7 6 10 10 C 1.38710 * 119.94249 * 0.02562 * 9 8 7 11 11 O 1.35893 * 120.05506 * 180.02562 * 10 9 8 12 12 C 1.42908 * 117.00110 * 359.97438 * 11 10 9 13 13 C 1.53003 * 109.47098 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.46768 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00318 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99925 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99882 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00108 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46957 * 90.00002 * 18 16 14 20 20 H 1.48498 * 109.47233 * 209.99915 * 18 16 14 21 21 H 1.48502 * 109.46841 * 330.00295 * 18 16 14 22 22 C 1.38116 * 119.97445 * 270.24942 * 6 5 4 23 23 C 1.53007 * 117.49866 * 202.60010 * 3 2 1 24 24 C 1.53003 * 117.49935 * 271.25581 * 3 2 1 25 25 H 1.09005 * 109.46566 * 175.01995 * 1 2 3 26 26 H 1.08995 * 109.47280 * 295.01513 * 1 2 3 27 27 H 1.08997 * 109.47177 * 55.02262 * 1 2 3 28 28 H 1.08996 * 109.47171 * 240.00669 * 2 1 3 29 29 H 1.08993 * 109.47234 * 120.00153 * 2 1 3 30 30 H 1.00905 * 111.00089 * 189.26299 * 4 3 2 31 31 H 1.08993 * 109.47615 * 55.01467 * 5 4 3 32 32 H 1.09008 * 109.46757 * 295.01433 * 5 4 3 33 33 H 1.07998 * 119.94660 * 359.97438 * 7 6 5 34 34 H 1.08006 * 119.97270 * 180.27605 * 8 7 6 35 35 H 1.08001 * 120.02380 * 180.02562 * 9 8 7 36 36 H 1.09003 * 109.46615 * 299.99875 * 12 11 10 37 37 H 1.08999 * 109.46994 * 59.99977 * 12 11 10 38 38 H 1.09000 * 109.46550 * 299.99364 * 13 12 11 39 39 H 1.08988 * 109.47095 * 59.99595 * 13 12 11 40 40 H 0.96997 * 119.99943 * 179.97438 * 17 16 14 41 41 H 1.08006 * 120.03079 * 359.97438 * 22 6 5 42 42 H 1.09000 * 117.49815 * 215.00747 * 23 3 2 43 43 H 1.09002 * 117.49726 * 0.02562 * 23 3 2 44 44 H 1.08996 * 117.50166 * 359.97438 * 24 3 2 45 45 H 1.09003 * 117.49213 * 144.97782 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5692 2.2809 1.1106 5 6 2.0858 1.7910 2.3956 6 6 1.6848 2.7422 3.4937 7 6 0.4908 2.5569 4.1663 8 6 0.1231 3.4241 5.1782 9 6 0.9457 4.4814 5.5165 10 6 2.1411 4.6727 4.8394 11 8 2.9522 5.7115 5.1706 12 6 2.5110 6.5682 6.2260 13 6 3.5464 7.6713 6.4539 14 6 3.0809 8.5750 7.5664 15 1 2.1404 8.3822 8.0610 16 6 3.8556 9.6482 7.9528 17 7 5.0011 9.8828 7.3508 18 14 3.2783 10.7688 9.3313 19 1 3.7820 10.2553 10.6304 20 1 3.8000 12.1406 9.1054 21 1 1.7938 10.8012 9.3539 22 6 2.5077 3.8011 3.8239 23 6 3.4567 1.6911 -0.5216 24 6 2.2473 2.1186 -1.3568 25 1 -0.3632 -1.0239 -0.0892 26 1 -0.3633 0.4345 0.9312 27 1 -0.3633 0.5891 -0.8420 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8193 3.2476 0.9653 31 1 3.1728 1.7268 2.3496 32 1 1.6718 0.8038 2.6010 33 1 -0.1534 1.7309 3.9036 34 1 -0.8078 3.2747 5.7050 35 1 0.6581 5.1583 6.3074 36 1 1.5559 7.0175 5.9539 37 1 2.3918 5.9867 7.1401 38 1 4.5017 7.2223 6.7258 39 1 3.6652 8.2526 5.5397 40 1 5.5460 10.6379 7.6223 41 1 3.4385 3.9475 3.2959 42 1 4.0395 2.4766 -0.0405 43 1 4.0253 0.8269 -0.8651 44 1 2.0209 1.5355 -2.2495 45 1 2.0341 3.1853 -1.4254 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449413427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:33 Heat of formation + Delta-G solvation = -9.282507 kcal Electronic energy + Delta-G solvation = -21938.140850 eV Core-core repulsion = 18727.726943 eV Total energy + Delta-G solvation = -3210.413907 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.91109 -39.05356 -37.27993 -33.88211 -33.35160 -32.15918 -30.89820 -30.19919 -29.11221 -25.58620 -24.74968 -24.18553 -22.66066 -22.25408 -21.65565 -20.15171 -19.54120 -17.69348 -16.34914 -16.15277 -16.00910 -15.60436 -15.39435 -15.31679 -14.53397 -14.41748 -14.27385 -13.92360 -13.59049 -13.24607 -12.77160 -12.68471 -12.59497 -12.39542 -12.30632 -11.79691 -11.72021 -11.39605 -11.37270 -11.27455 -11.21484 -10.89078 -10.74689 -10.70795 -10.47237 -10.21340 -9.86687 -9.67099 -9.31456 -8.83407 -8.46917 -8.44130 -7.84255 -6.11664 -4.16349 1.41857 1.69134 3.26519 3.32462 3.35319 3.40958 3.75304 3.84756 4.14309 4.36668 4.39955 4.50850 4.60500 4.81518 4.98527 5.12840 5.19285 5.21982 5.24785 5.25761 5.32158 5.36719 5.48232 5.51025 5.59670 5.65267 5.67814 5.75810 5.81306 5.82142 5.91005 6.02312 6.05548 6.14704 6.17510 6.53993 6.55507 6.68647 6.72205 6.79918 6.98353 7.12701 7.49254 7.62416 7.80137 8.05051 8.22493 8.89234 9.48027 10.99939 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029510 B = 0.002499 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.617432 B =11203.229406 C =11904.286481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 C 0.056 3.944 4 N -0.643 5.643 5 C 0.105 3.895 6 C -0.054 4.054 7 C -0.148 4.148 8 C -0.081 4.081 9 C -0.210 4.210 10 C 0.145 3.855 11 O -0.317 6.317 12 C 0.065 3.935 13 C 0.025 3.975 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.156 4.156 23 C -0.219 4.219 24 C -0.170 4.170 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.347 0.653 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.263 0.737 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.827 -19.818 -14.123 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 C -0.036 4.036 4 N -0.273 5.273 5 C -0.023 4.023 6 C -0.055 4.055 7 C -0.167 4.167 8 C -0.100 4.100 9 C -0.229 4.229 10 C 0.098 3.902 11 O -0.230 6.230 12 C -0.009 4.009 13 C -0.012 4.012 14 C -0.565 4.565 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.176 4.176 23 C -0.259 4.259 24 C -0.207 4.207 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.166 0.834 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.141 0.859 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.095 -19.945 -14.122 25.744 hybrid contribution 0.596 1.156 0.851 1.554 sum -7.499 -18.789 -13.271 24.195 Atomic orbital electron populations 1.21591 0.94657 1.00569 1.02944 1.20959 0.96886 0.91824 1.01746 1.21726 0.95390 0.94963 0.91531 1.60314 1.61385 1.05771 0.99796 1.20813 0.97573 0.97265 0.86670 1.19415 0.94508 0.95137 0.96415 1.20762 0.96805 1.01083 0.98045 1.20905 0.98682 0.93898 0.96472 1.21401 0.95986 1.01675 1.03812 1.19143 0.89615 0.88216 0.93234 1.86168 1.45698 1.37057 1.54072 1.23331 1.00318 0.91011 0.86196 1.19122 0.93580 0.90794 0.97683 1.20968 1.06156 1.11231 1.18114 0.92358 1.24996 0.94835 0.97549 0.96834 1.69974 1.12071 1.29404 1.41324 0.86482 0.78997 0.79864 0.82017 1.20480 1.21032 1.19747 1.20272 1.01694 0.95949 0.99653 1.23654 0.92385 1.03948 1.05932 1.23163 1.01853 1.01355 0.94363 0.93441 0.91665 0.92802 0.91697 0.91701 0.83404 0.94008 0.89992 0.86337 0.86153 0.85270 0.93125 0.93136 0.95430 0.95420 0.92694 0.85865 0.88878 0.88748 0.88371 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.73 37.16 0.36 -0.69 16 2 C -0.08 -0.56 5.57 -26.73 -0.15 -0.71 16 3 C 0.06 0.47 1.78 -131.60 -0.23 0.24 16 4 N -0.64 -6.26 6.32 -101.21 -0.64 -6.90 16 5 C 0.10 1.06 5.54 -4.98 -0.03 1.03 16 6 C -0.05 -0.68 5.34 -104.65 -0.56 -1.24 16 7 C -0.15 -1.82 9.70 -39.56 -0.38 -2.21 16 8 C -0.08 -1.07 10.04 -39.61 -0.40 -1.47 16 9 C -0.21 -3.30 9.04 -39.43 -0.36 -3.65 16 10 C 0.14 2.53 6.69 -39.22 -0.26 2.27 16 11 O -0.32 -6.57 10.14 -19.40 -0.20 -6.76 16 12 C 0.07 1.41 4.68 37.16 0.17 1.59 16 13 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 14 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 18 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 22 C -0.16 -2.34 9.64 -39.43 -0.38 -2.72 16 23 C -0.22 -1.77 10.10 -26.69 -0.27 -2.04 16 24 C -0.17 -1.32 9.99 -26.69 -0.27 -1.59 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.56 8.00 -51.93 -0.42 0.15 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 29 H 0.06 0.48 7.38 -51.93 -0.38 0.09 16 30 H 0.35 3.57 8.53 -39.29 -0.34 3.23 16 31 H 0.04 0.43 8.03 -51.93 -0.42 0.01 16 32 H 0.08 0.77 7.23 -51.92 -0.38 0.39 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 35 H 0.13 2.00 6.30 -52.49 -0.33 1.67 16 36 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 37 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.77 8.14 -51.94 -0.42 0.35 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.12 1.76 8.06 -52.48 -0.42 1.33 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -29.65 372.61 -10.48 -40.13 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.67 Total: 1.54 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -3.31 Total: -24.10 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.10 Total: -32.69 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.20 Total: -6.76 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.65 -10.48 -40.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449413427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.847 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds