Wall clock time and date at job start Tue Mar 31 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46697 * 2 1 4 4 N 1.46900 * 115.54927 * 56.92994 * 3 2 1 5 5 C 1.46900 * 110.99926 * 65.31483 * 4 3 2 6 6 C 1.50699 * 109.47152 * 175.01734 * 5 4 3 7 7 C 1.38289 * 119.97031 * 89.99828 * 6 5 4 8 8 C 1.38243 * 120.11076 * 179.70244 * 7 6 5 9 9 C 1.38167 * 120.05636 * 0.25230 * 8 7 6 10 10 C 1.38710 * 119.94249 * 0.02562 * 9 8 7 11 11 O 1.35893 * 120.05506 * 180.02562 * 10 9 8 12 12 C 1.42908 * 117.00110 * 359.97438 * 11 10 9 13 13 C 1.53003 * 109.47098 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.46768 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00318 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99925 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99882 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00108 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46957 * 90.00002 * 18 16 14 20 20 H 1.48498 * 109.47233 * 209.99915 * 18 16 14 21 21 H 1.48502 * 109.46841 * 330.00295 * 18 16 14 22 22 C 1.38116 * 119.97445 * 270.24942 * 6 5 4 23 23 C 1.53007 * 117.49866 * 202.60010 * 3 2 1 24 24 C 1.53003 * 117.49935 * 271.25581 * 3 2 1 25 25 H 1.09005 * 109.46566 * 175.01995 * 1 2 3 26 26 H 1.08995 * 109.47280 * 295.01513 * 1 2 3 27 27 H 1.08997 * 109.47177 * 55.02262 * 1 2 3 28 28 H 1.08996 * 109.47171 * 240.00669 * 2 1 3 29 29 H 1.08993 * 109.47234 * 120.00153 * 2 1 3 30 30 H 1.00905 * 111.00089 * 189.26299 * 4 3 2 31 31 H 1.08993 * 109.47615 * 55.01467 * 5 4 3 32 32 H 1.09008 * 109.46757 * 295.01433 * 5 4 3 33 33 H 1.07998 * 119.94660 * 359.97438 * 7 6 5 34 34 H 1.08006 * 119.97270 * 180.27605 * 8 7 6 35 35 H 1.08001 * 120.02380 * 180.02562 * 9 8 7 36 36 H 1.09003 * 109.46615 * 299.99875 * 12 11 10 37 37 H 1.08999 * 109.46994 * 59.99977 * 12 11 10 38 38 H 1.09000 * 109.46550 * 299.99364 * 13 12 11 39 39 H 1.08988 * 109.47095 * 59.99595 * 13 12 11 40 40 H 0.96997 * 119.99943 * 179.97438 * 17 16 14 41 41 H 1.08006 * 120.03079 * 359.97438 * 22 6 5 42 42 H 1.09000 * 117.49815 * 215.00747 * 23 3 2 43 43 H 1.09002 * 117.49726 * 0.02562 * 23 3 2 44 44 H 1.08996 * 117.50166 * 359.97438 * 24 3 2 45 45 H 1.09003 * 117.49213 * 144.97782 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5692 2.2809 1.1106 5 6 2.0858 1.7910 2.3956 6 6 1.6848 2.7422 3.4937 7 6 0.4908 2.5569 4.1663 8 6 0.1231 3.4241 5.1782 9 6 0.9457 4.4814 5.5165 10 6 2.1411 4.6727 4.8394 11 8 2.9522 5.7115 5.1706 12 6 2.5110 6.5682 6.2260 13 6 3.5464 7.6713 6.4539 14 6 3.0809 8.5750 7.5664 15 1 2.1404 8.3822 8.0610 16 6 3.8556 9.6482 7.9528 17 7 5.0011 9.8828 7.3508 18 14 3.2783 10.7688 9.3313 19 1 3.7820 10.2553 10.6304 20 1 3.8000 12.1406 9.1054 21 1 1.7938 10.8012 9.3539 22 6 2.5077 3.8011 3.8239 23 6 3.4567 1.6911 -0.5216 24 6 2.2473 2.1186 -1.3568 25 1 -0.3632 -1.0239 -0.0892 26 1 -0.3633 0.4345 0.9312 27 1 -0.3633 0.5891 -0.8420 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8193 3.2476 0.9653 31 1 3.1728 1.7268 2.3496 32 1 1.6718 0.8038 2.6010 33 1 -0.1534 1.7309 3.9036 34 1 -0.8078 3.2747 5.7050 35 1 0.6581 5.1583 6.3074 36 1 1.5559 7.0175 5.9539 37 1 2.3918 5.9867 7.1401 38 1 4.5017 7.2223 6.7258 39 1 3.6652 8.2526 5.5397 40 1 5.5460 10.6379 7.6223 41 1 3.4385 3.9475 3.2959 42 1 4.0395 2.4766 -0.0405 43 1 4.0253 0.8269 -0.8651 44 1 2.0209 1.5355 -2.2495 45 1 2.0341 3.1853 -1.4254 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449413427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:32 Heat of formation + Delta-G solvation = -25.187826 kcal Electronic energy + Delta-G solvation = -21938.830557 eV Core-core repulsion = 18727.726943 eV Total energy + Delta-G solvation = -3211.103614 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.12635 -39.85732 -38.54127 -35.52012 -34.69710 -32.73918 -32.59467 -31.35505 -30.47832 -27.13174 -26.13091 -24.76995 -23.61754 -23.32937 -23.13391 -21.53330 -20.19038 -19.16264 -18.18263 -17.09629 -16.98346 -16.92377 -16.76963 -16.59492 -16.23281 -15.36510 -15.09240 -14.59437 -14.49331 -14.40181 -14.34677 -14.17876 -13.83813 -13.55053 -13.08261 -13.03336 -13.01070 -12.62168 -12.56216 -12.46248 -12.40982 -12.17729 -11.88370 -11.83150 -11.61274 -11.58869 -11.40615 -11.34769 -10.86677 -10.63788 -9.88732 -9.23718 -9.09936 -8.28331 -6.42199 0.31715 0.53220 1.39966 1.42313 1.53511 2.25443 2.49331 2.65564 2.89452 3.06086 3.29012 3.75193 3.76356 3.89903 3.96540 3.98122 4.15304 4.21515 4.24774 4.35942 4.43503 4.53273 4.56777 4.59204 4.66860 4.71303 4.73747 4.77623 4.80614 4.98532 5.06715 5.10974 5.19346 5.20724 5.29721 5.32897 5.41664 5.44356 5.51655 5.56478 5.63155 5.66932 5.89123 6.05054 6.07651 6.31882 6.55570 6.72562 7.28037 8.84882 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029510 B = 0.002499 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.617432 B =11203.229406 C =11904.286481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.075 4.075 3 C 0.050 3.950 4 N -0.646 5.646 5 C 0.111 3.889 6 C -0.047 4.047 7 C -0.138 4.138 8 C -0.078 4.078 9 C -0.221 4.221 10 C 0.106 3.894 11 O -0.343 6.343 12 C 0.085 3.915 13 C 0.028 3.972 14 C -0.546 4.546 15 H 0.071 0.929 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.977 3.023 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.259 1.259 22 C -0.164 4.164 23 C -0.221 4.221 24 C -0.168 4.168 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.341 0.659 31 H 0.040 0.960 32 H 0.097 0.903 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.127 0.873 36 H 0.059 0.941 37 H 0.060 0.940 38 H -0.002 1.002 39 H -0.002 1.002 40 H 0.267 0.733 41 H 0.120 0.880 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.921 -21.539 -14.077 27.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 C -0.042 4.042 4 N -0.275 5.275 5 C -0.017 4.017 6 C -0.048 4.048 7 C -0.157 4.157 8 C -0.096 4.096 9 C -0.240 4.240 10 C 0.061 3.939 11 O -0.258 6.258 12 C 0.011 3.989 13 C -0.009 4.009 14 C -0.584 4.584 15 H 0.089 0.911 16 C -0.198 4.198 17 N -0.571 5.571 18 Si 0.800 3.200 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.183 1.183 22 C -0.184 4.184 23 C -0.261 4.261 24 C -0.205 4.205 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.159 0.841 31 H 0.058 0.942 32 H 0.116 0.884 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.144 0.856 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.076 0.924 41 H 0.139 0.861 42 H 0.100 0.900 43 H 0.122 0.878 44 H 0.129 0.871 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.204 -21.697 -14.090 27.810 hybrid contribution 1.236 1.561 0.711 2.114 sum -8.969 -20.136 -13.380 25.786 Atomic orbital electron populations 1.21554 0.94671 1.01105 1.02095 1.20990 0.96790 0.91015 1.02477 1.21855 0.95581 0.95451 0.91281 1.60345 1.61435 1.05679 1.00043 1.20784 0.97601 0.97108 0.86163 1.19679 0.94118 0.94331 0.96658 1.21170 0.96532 1.01172 0.96788 1.21257 0.99185 0.92692 0.96470 1.21509 0.95851 1.02786 1.03886 1.19476 0.90665 0.88441 0.95322 1.86077 1.47193 1.38422 1.54073 1.22850 0.98581 0.90199 0.87252 1.18963 0.93810 0.91952 0.96162 1.21392 1.06745 1.11725 1.18523 0.91102 1.26061 0.94774 0.99299 0.99636 1.70120 1.13503 1.30256 1.43174 0.85273 0.79099 0.77294 0.78331 1.19489 1.20624 1.18291 1.20414 1.02248 0.96439 0.99260 1.23653 0.92366 1.04028 1.06032 1.23225 1.01379 1.01298 0.94615 0.92287 0.92761 0.93296 0.90496 0.91468 0.84069 0.94199 0.88436 0.83344 0.83120 0.85559 0.92276 0.92213 0.98393 0.98396 0.92417 0.86148 0.89979 0.87764 0.87054 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.73 71.98 0.70 -1.03 16 2 C -0.07 -0.92 5.57 30.59 0.17 -0.75 16 3 C 0.05 0.76 1.78 3.53 0.01 0.77 16 4 N -0.65 -11.64 6.32 -474.13 -3.00 -14.64 16 5 C 0.11 2.06 5.54 85.56 0.47 2.53 16 6 C -0.05 -1.12 5.34 -19.88 -0.11 -1.23 16 7 C -0.14 -3.00 9.70 22.28 0.22 -2.78 16 8 C -0.08 -1.86 10.04 22.25 0.22 -1.64 16 9 C -0.22 -6.84 9.04 22.37 0.20 -6.63 16 10 C 0.11 3.79 6.69 22.51 0.15 3.94 16 11 O -0.34 -14.93 10.14 -92.35 -0.94 -15.87 16 12 C 0.09 3.82 4.68 71.98 0.34 4.16 16 13 C 0.03 1.57 5.34 29.85 0.16 1.73 16 14 C -0.55 -31.11 9.11 25.60 0.23 -30.88 16 15 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 16 C 0.00 0.05 5.46 84.66 0.46 0.51 16 17 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 18 Si 0.98 43.69 29.54 68.60 2.03 45.72 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 22 C -0.16 -4.97 9.64 22.36 0.22 -4.75 16 23 C -0.22 -3.31 10.10 30.62 0.31 -3.00 16 24 C -0.17 -2.38 9.99 30.62 0.31 -2.07 16 25 H 0.06 0.60 8.14 -2.38 -0.02 0.59 16 26 H 0.05 0.81 8.00 -2.39 -0.02 0.79 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.78 8.10 -2.39 -0.02 0.76 16 29 H 0.07 0.81 7.38 -2.39 -0.02 0.79 16 30 H 0.34 6.81 8.53 -89.69 -0.77 6.04 16 31 H 0.04 0.76 8.03 -2.39 -0.02 0.74 16 32 H 0.10 1.53 7.23 -2.38 -0.02 1.52 16 33 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 35 H 0.13 3.88 6.30 -2.91 -0.02 3.86 16 36 H 0.06 2.49 7.66 -2.39 -0.02 2.48 16 37 H 0.06 2.51 7.66 -2.39 -0.02 2.49 16 38 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 40 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 42 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -65.57 372.61 2.63 -62.94 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.19 Total: 19.78 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 4.06 Total: -41.13 kcal Atomic # 7 Polarization: -68.73 SS G_CDS: -2.71 Total: -71.44 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.94 Total: -15.87 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -65.57 2.63 -62.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449413427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.753 kcal (2) G-P(sol) polarization free energy of solvation -65.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds