Wall clock time and date at job start Tue Mar 31 2020 06:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46849 * 2 1 4 4 C 1.30999 * 120.00274 * 127.04649 * 3 2 1 5 5 C 1.50701 * 119.99737 * 7.64627 * 4 3 2 6 6 N 1.46902 * 109.46983 * 127.23619 * 5 4 3 7 7 C 1.46903 * 111.00076 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.47199 * 179.97438 * 7 6 5 9 9 C 1.38282 * 119.97174 * 270.02167 * 8 7 6 10 10 C 1.38254 * 120.11298 * 179.97438 * 9 8 7 11 11 C 1.38166 * 120.05317 * 359.77040 * 10 9 8 12 12 C 1.38711 * 119.94160 * 0.48177 * 11 10 9 13 13 O 1.35905 * 120.05362 * 179.76802 * 12 11 10 14 14 C 1.42903 * 117.00086 * 359.72769 * 13 12 11 15 15 C 1.52994 * 109.47018 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.46989 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99523 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00180 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99542 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00148 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47268 * 59.99414 * 20 18 16 22 22 H 1.48501 * 109.47155 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46983 * 299.99471 * 20 18 16 24 24 C 1.38124 * 119.97528 * 89.99917 * 8 7 6 25 25 H 1.08993 * 109.47212 * 60.00105 * 1 2 3 26 26 H 1.08996 * 109.46846 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46845 * 299.99964 * 1 2 3 28 28 H 1.09000 * 109.46961 * 239.99536 * 2 1 3 29 29 H 1.08999 * 109.46933 * 119.99583 * 2 1 3 30 30 H 1.07999 * 119.99645 * 307.03463 * 3 2 1 31 31 H 1.08000 * 120.00318 * 187.65526 * 4 3 2 32 32 H 1.08999 * 109.47185 * 7.23355 * 5 4 3 33 33 H 1.08999 * 109.47462 * 247.23249 * 5 4 3 34 34 H 1.00900 * 111.00047 * 56.04435 * 6 5 4 35 35 H 1.08994 * 109.47154 * 59.99613 * 7 6 5 36 36 H 1.09002 * 109.47056 * 299.99971 * 7 6 5 37 37 H 1.07995 * 119.94781 * 0.02562 * 9 8 7 38 38 H 1.07997 * 119.97331 * 180.02562 * 10 9 8 39 39 H 1.07996 * 120.02962 * 180.25060 * 11 10 9 40 40 H 1.09004 * 109.46675 * 300.00090 * 14 13 12 41 41 H 1.08997 * 109.46715 * 60.00033 * 14 13 12 42 42 H 1.09004 * 109.47435 * 299.99580 * 15 14 13 43 43 H 1.08997 * 109.47387 * 60.00400 * 15 14 13 44 44 H 0.97004 * 119.99400 * 180.02562 * 19 18 16 45 45 H 1.08006 * 120.02724 * 0.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8950 1.8106 0.9055 5 6 3.5160 0.8026 1.8379 6 7 4.9787 0.9305 1.7934 7 6 5.6195 -0.0393 2.6917 8 6 7.1161 0.1211 2.6188 9 6 7.8443 -0.6034 1.6930 10 6 9.2174 -0.4580 1.6232 11 6 9.8650 0.4155 2.4756 12 6 9.1374 1.1395 3.4087 13 8 9.7725 1.9958 4.2514 14 6 11.1924 2.0966 4.1251 15 6 11.7255 3.1004 5.1493 16 6 13.2229 3.2071 5.0157 17 1 13.7422 2.6176 4.2746 18 6 13.9298 4.0565 5.8401 19 7 13.2973 4.7740 6.7428 20 14 15.7858 4.1883 5.6750 21 1 16.1294 4.6489 4.3057 22 1 16.3033 5.1626 6.6690 23 1 16.4000 2.8584 5.9186 24 6 7.7594 0.9921 3.4763 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6811 2.1177 -0.7466 31 1 3.1612 2.8544 0.9839 32 1 3.2295 -0.2027 1.5290 33 1 3.1662 0.9840 2.8542 34 1 5.2662 1.8723 2.0132 35 1 5.3477 -1.0503 2.3883 36 1 5.2843 0.1358 3.7140 37 1 7.3395 -1.2833 1.0228 38 1 9.7839 -1.0247 0.8991 39 1 10.9371 0.5317 2.4181 40 1 11.6433 1.1206 4.3047 41 1 11.4446 2.4340 3.1198 42 1 11.2747 4.0765 4.9701 43 1 11.4733 2.7626 6.1544 44 1 13.7946 5.3719 7.3226 45 1 7.1902 1.5578 4.1993 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449458783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:47 Heat of formation + Delta-G solvation = -30.675395 kcal Electronic energy + Delta-G solvation = -21221.729231 eV Core-core repulsion = 18010.387659 eV Total energy + Delta-G solvation = -3211.341573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.08537 -39.02512 -37.97811 -35.84783 -35.43104 -32.69077 -32.56590 -31.07514 -30.48938 -27.43086 -26.82227 -24.73498 -24.06260 -23.42095 -23.31213 -21.56366 -19.57654 -18.96911 -18.11536 -17.15954 -16.96115 -16.87496 -16.80529 -16.54516 -16.12038 -15.65455 -15.31574 -14.79461 -14.67651 -14.35584 -14.32952 -14.24033 -14.16581 -13.30680 -13.12416 -13.02407 -12.97506 -12.83511 -12.66819 -12.56553 -12.50843 -12.32933 -11.86179 -11.79160 -11.59471 -11.58248 -11.39630 -11.26357 -10.62244 -10.12018 -9.78777 -9.28890 -9.09436 -8.27347 -6.41382 0.32911 0.54247 1.30856 1.40524 1.44587 1.52606 2.26499 2.50664 2.78065 3.06905 3.51257 3.78747 3.88915 3.91450 4.13428 4.19856 4.22226 4.25558 4.30818 4.37249 4.42168 4.47565 4.52760 4.57057 4.67360 4.68907 4.72702 4.79306 4.81646 4.97387 5.11431 5.14903 5.24781 5.30391 5.38977 5.42610 5.45277 5.52606 5.64095 5.67592 5.76738 5.89022 5.94414 6.04950 6.07562 6.34360 6.56577 6.73000 7.28774 8.85475 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033832 B = 0.002086 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.419169 B =13420.835845 C =13903.252524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.148 4.148 4 C -0.170 4.170 5 C 0.080 3.920 6 N -0.687 5.687 7 C 0.106 3.894 8 C -0.046 4.046 9 C -0.140 4.140 10 C -0.079 4.079 11 C -0.222 4.222 12 C 0.106 3.894 13 O -0.342 6.342 14 C 0.085 3.915 15 C 0.028 3.972 16 C -0.549 4.549 17 H 0.071 0.929 18 C 0.002 3.998 19 N -0.930 5.930 20 Si 0.977 3.023 21 H -0.264 1.264 22 H -0.282 1.282 23 H -0.263 1.263 24 C -0.164 4.164 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.038 0.962 34 H 0.341 0.659 35 H 0.099 0.901 36 H 0.044 0.956 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.126 0.874 40 H 0.059 0.941 41 H 0.059 0.941 42 H -0.002 1.002 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.081 -12.732 -14.101 29.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.167 4.167 4 C -0.188 4.188 5 C -0.048 4.048 6 N -0.318 5.318 7 C -0.022 4.022 8 C -0.046 4.046 9 C -0.159 4.159 10 C -0.097 4.097 11 C -0.241 4.241 12 C 0.061 3.939 13 O -0.257 6.257 14 C 0.011 3.989 15 C -0.009 4.009 16 C -0.586 4.586 17 H 0.089 0.911 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.800 3.200 21 H -0.189 1.189 22 H -0.207 1.207 23 H -0.188 1.188 24 C -0.184 4.184 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.133 0.867 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.056 0.944 34 H 0.159 0.841 35 H 0.117 0.883 36 H 0.062 0.938 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.144 0.856 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.016 0.984 43 H 0.017 0.983 44 H 0.076 0.924 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.086 -12.888 -14.351 29.323 hybrid contribution 1.039 1.115 1.188 1.932 sum -21.047 -11.772 -13.163 27.474 Atomic orbital electron populations 1.21693 0.94477 1.02172 1.01934 1.20840 0.96540 0.94111 1.02948 1.22954 0.98103 0.98133 0.97494 1.22707 0.98779 0.99134 0.98182 1.21219 0.86487 0.99788 0.97285 1.60560 1.06812 1.09145 1.55237 1.20860 0.88155 0.98103 0.95128 1.19672 0.95882 0.94780 0.94287 1.21176 0.93536 1.01668 0.99481 1.21252 0.95064 0.96084 0.97299 1.21506 1.00834 1.02006 0.99794 1.19485 0.93078 0.90749 0.90635 1.86078 1.23562 1.59692 1.56354 1.22847 0.76052 0.99882 1.00132 1.18966 0.95402 0.93178 0.93371 1.21378 0.92067 1.25515 1.19684 0.91109 1.26051 1.04630 0.94641 0.94355 1.70121 1.38297 1.26896 1.21617 0.85324 0.77838 0.78445 0.78379 1.18856 1.20727 1.18812 1.20438 0.91005 1.03331 1.03585 0.92429 0.91797 0.92971 0.90910 0.90611 0.86703 0.87547 0.88785 0.94423 0.84126 0.88297 0.93808 0.83417 0.83185 0.85581 0.92246 0.92293 0.98361 0.98329 0.92438 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.90 71.98 0.71 -0.63 16 2 C -0.11 -1.19 6.02 29.85 0.18 -1.01 16 3 C -0.15 -1.98 9.51 25.65 0.24 -1.74 16 4 C -0.17 -2.58 9.77 25.65 0.25 -2.33 16 5 C 0.08 1.20 5.77 85.56 0.49 1.69 16 6 N -0.69 -12.51 6.48 -521.99 -3.38 -15.89 16 7 C 0.11 1.91 5.81 85.55 0.50 2.41 16 8 C -0.05 -1.09 5.39 -19.88 -0.11 -1.20 16 9 C -0.14 -3.10 9.70 22.28 0.22 -2.89 16 10 C -0.08 -1.92 10.04 22.26 0.22 -1.70 16 11 C -0.22 -6.94 9.04 22.37 0.20 -6.74 16 12 C 0.11 3.79 6.69 22.50 0.15 3.94 16 13 O -0.34 -14.90 10.14 -92.48 -0.94 -15.84 16 14 C 0.09 3.82 4.68 71.98 0.34 4.16 16 15 C 0.03 1.56 5.34 29.85 0.16 1.72 16 16 C -0.55 -31.31 9.11 25.60 0.23 -31.07 16 17 H 0.07 3.76 7.74 -2.91 -0.02 3.73 16 18 C 0.00 0.11 5.46 84.65 0.46 0.57 16 19 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 20 Si 0.98 43.67 29.54 68.60 2.03 45.70 16 21 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 24 C -0.16 -4.97 9.64 22.36 0.22 -4.75 16 25 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.81 5.30 -2.39 -0.01 0.80 16 30 H 0.12 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.11 1.64 8.06 -2.91 -0.02 1.61 16 32 H 0.09 1.25 5.30 -2.39 -0.01 1.23 16 33 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.34 6.67 8.72 -89.69 -0.78 5.89 16 35 H 0.10 1.45 8.08 -2.39 -0.02 1.43 16 36 H 0.04 0.77 8.09 -2.39 -0.02 0.75 16 37 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 38 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 39 H 0.13 3.91 6.30 -2.91 -0.02 3.89 16 40 H 0.06 2.51 7.67 -2.38 -0.02 2.49 16 41 H 0.06 2.50 7.65 -2.39 -0.02 2.48 16 42 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 43 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 45 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -66.24 373.07 2.64 -63.60 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.17 Total: 18.66 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 4.47 Total: -39.57 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -3.10 Total: -72.55 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.94 Total: -15.84 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -66.24 2.64 -63.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449458783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.924 kcal (2) G-P(sol) polarization free energy of solvation -66.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds