Wall clock time and date at job start Tue Mar 31 2020 06:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 120.00061 * 2 1 4 4 C 1.50704 * 119.99719 * 179.97438 * 2 1 3 5 5 C 1.53006 * 109.46894 * 95.00419 * 4 2 1 6 6 N 1.46900 * 109.47078 * 179.97438 * 5 4 2 7 7 C 1.46896 * 111.00195 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47382 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.97205 * 270.02476 * 8 7 6 10 10 C 1.38250 * 120.10833 * 180.02562 * 9 8 7 11 11 C 1.38159 * 120.05742 * 359.68104 * 10 9 8 12 12 C 1.38710 * 119.94311 * 0.57011 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.72143 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 6 25 25 H 1.07998 * 120.00337 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.00090 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47396 * 269.99883 * 3 2 1 28 28 H 1.09000 * 109.47392 * 29.99944 * 3 2 1 29 29 H 1.09002 * 109.47393 * 150.00017 * 3 2 1 30 30 H 1.08997 * 109.47520 * 335.00715 * 4 2 1 31 31 H 1.08996 * 109.47045 * 214.99784 * 4 2 1 32 32 H 1.08996 * 109.47046 * 59.99370 * 5 4 2 33 33 H 1.09006 * 109.46798 * 299.99638 * 5 4 2 34 34 H 1.00901 * 111.00271 * 303.95429 * 6 5 4 35 35 H 1.09005 * 109.46944 * 59.99947 * 7 6 5 36 36 H 1.09002 * 109.47398 * 300.00389 * 7 6 5 37 37 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 38 38 H 1.08006 * 119.97154 * 179.97438 * 10 9 8 39 39 H 1.08006 * 120.03137 * 180.29323 * 11 10 9 40 40 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 41 41 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 42 42 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 43 43 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 44 44 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 45 45 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3052 0.0006 5 6 2.4274 -1.6846 -1.4363 6 7 3.1624 -2.9565 -1.4357 7 6 3.5287 -3.3535 -2.8018 8 6 4.2799 -4.6592 -2.7611 9 6 5.6573 -4.6602 -2.6386 10 6 6.3493 -5.8565 -2.6015 11 6 5.6654 -7.0543 -2.6802 12 6 4.2843 -7.0559 -2.8084 13 8 3.6098 -8.2327 -2.8916 14 6 4.3873 -9.4308 -2.8466 15 6 3.4613 -10.6441 -2.9522 16 6 4.2813 -11.9076 -2.9042 17 1 5.3555 -11.8509 -2.8074 18 6 3.6601 -13.1360 -2.9825 19 7 2.3520 -13.2051 -3.0998 20 14 4.6766 -14.7022 -2.9236 21 1 5.4240 -14.7592 -1.6417 22 1 3.7777 -15.8798 -3.0248 23 1 5.6362 -14.7124 -4.0568 24 6 3.5920 -5.8540 -2.8457 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 2.2452 1.6197 -1.0276 28 1 1.4745 2.0647 0.5138 29 1 3.0159 1.1747 0.5138 30 1 1.4385 -2.0853 0.4351 31 1 2.9742 -1.1987 0.5899 32 1 3.0523 -0.9044 -1.8709 33 1 1.5167 -1.7910 -2.0257 34 1 3.9776 -2.9028 -0.8436 35 1 4.1608 -2.5848 -3.2464 36 1 2.6254 -3.4720 -3.4003 37 1 6.1933 -3.7250 -2.5718 38 1 7.4252 -5.8547 -2.5062 39 1 6.2061 -7.9887 -2.6464 40 1 5.0924 -9.4378 -3.6779 41 1 4.9352 -9.4732 -1.9052 42 1 2.7566 -10.6369 -2.1207 43 1 2.9131 -10.6020 -3.8934 44 1 1.9150 -14.0693 -3.1545 45 1 2.5163 -5.8526 -2.9414 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449479745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:50 Heat of formation + Delta-G solvation = -36.367086 kcal Electronic energy + Delta-G solvation = -21256.246579 eV Core-core repulsion = 18044.658196 eV Total energy + Delta-G solvation = -3211.588383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07989 -39.02529 -37.98323 -36.04297 -35.44310 -32.64512 -32.53396 -30.68510 -29.58841 -28.06753 -27.08339 -25.90323 -23.56725 -23.39036 -23.14535 -21.55839 -19.34491 -19.01764 -18.13871 -17.20243 -16.94607 -16.89417 -16.66503 -16.40638 -16.15387 -15.62705 -15.16696 -14.86983 -14.54981 -14.32778 -14.28266 -14.18423 -14.10338 -13.62788 -13.34766 -13.02036 -12.89974 -12.69098 -12.59240 -12.54774 -12.50842 -12.40708 -11.95761 -11.83747 -11.71614 -11.58392 -11.57090 -11.38569 -10.62003 -9.94014 -9.82485 -9.37211 -9.08402 -8.26867 -6.41033 0.34427 0.53730 1.32896 1.40529 1.44810 1.52853 2.27218 2.51410 2.75859 3.07214 3.36332 3.82518 3.92398 4.00112 4.07768 4.14136 4.22464 4.25454 4.25905 4.35553 4.40573 4.43818 4.55670 4.65440 4.67920 4.72499 4.73097 4.84558 4.86204 5.04320 5.09533 5.10956 5.13925 5.17451 5.30709 5.44562 5.45562 5.52465 5.60906 5.68111 5.77038 5.89226 5.99172 6.03695 6.07605 6.45370 6.57872 6.73468 7.29046 8.86065 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026496 B = 0.002166 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.510440 B =12925.491063 C =13688.008820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.119 4.119 4 C -0.082 4.082 5 C 0.072 3.928 6 N -0.698 5.698 7 C 0.108 3.892 8 C -0.046 4.046 9 C -0.152 4.152 10 C -0.077 4.077 11 C -0.223 4.223 12 C 0.105 3.895 13 O -0.344 6.344 14 C 0.085 3.915 15 C 0.028 3.972 16 C -0.548 4.548 17 H 0.071 0.929 18 C 0.001 3.999 19 N -0.931 5.931 20 Si 0.978 3.022 21 H -0.264 1.264 22 H -0.282 1.282 23 H -0.263 1.263 24 C -0.153 4.153 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.348 0.652 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.126 0.874 40 H 0.060 0.940 41 H 0.059 0.941 42 H -0.003 1.003 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.304 28.968 3.943 29.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.132 4.132 3 C -0.176 4.176 4 C -0.120 4.120 5 C -0.057 4.057 6 N -0.330 5.330 7 C -0.021 4.021 8 C -0.047 4.047 9 C -0.170 4.170 10 C -0.095 4.095 11 C -0.242 4.242 12 C 0.060 3.940 13 O -0.258 6.258 14 C 0.011 3.989 15 C -0.010 4.010 16 C -0.585 4.585 17 H 0.089 0.911 18 C -0.198 4.198 19 N -0.570 5.570 20 Si 0.801 3.199 21 H -0.188 1.188 22 H -0.207 1.207 23 H -0.188 1.188 24 C -0.173 4.173 25 H 0.124 0.876 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.167 0.833 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.170 0.830 38 H 0.170 0.830 39 H 0.144 0.856 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.076 0.924 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.372 28.438 3.913 29.037 hybrid contribution 0.611 -0.818 -0.204 1.041 sum 4.983 27.620 3.709 28.310 Atomic orbital electron populations 1.23847 0.95548 1.02210 1.02386 1.21846 0.95545 0.96021 0.99738 1.20892 1.00266 0.93842 1.02564 1.20629 1.00489 0.94309 0.96543 1.21865 0.98104 0.89037 0.96712 1.60399 1.29704 1.32585 1.10315 1.20798 0.98662 0.91972 0.90637 1.19684 0.93926 0.93657 0.97396 1.21217 0.93131 0.98946 1.03712 1.21231 1.01002 0.90967 0.96301 1.21511 0.92854 1.00841 1.08986 1.19533 0.91880 0.86180 0.96455 1.86085 1.38335 1.13501 1.87895 1.22847 0.94342 0.81301 1.00403 1.18968 0.94986 0.91079 0.95924 1.21368 0.94237 0.91069 1.51862 0.91057 1.26072 0.96233 1.03376 0.94117 1.70124 1.10318 1.26450 1.50097 0.85312 0.78158 0.77017 0.79427 1.18826 1.20746 1.18776 1.20405 1.00089 0.89770 1.06999 0.87594 0.88938 0.90977 0.91365 0.91345 0.91755 0.90576 0.93926 0.91712 0.83313 0.91940 0.90515 0.82999 0.83005 0.85573 0.92184 0.92281 0.98441 0.98367 0.92430 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.76 13.89 67.78 0.94 -1.82 16 2 C -0.13 -1.71 5.31 -16.49 -0.09 -1.80 16 3 C -0.12 -1.13 10.03 71.23 0.71 -0.42 16 4 C -0.08 -1.15 5.64 29.85 0.17 -0.98 16 5 C 0.07 1.04 5.67 86.31 0.49 1.53 16 6 N -0.70 -12.27 6.49 -517.93 -3.36 -15.63 16 7 C 0.11 1.94 5.81 85.56 0.50 2.44 16 8 C -0.05 -1.09 5.39 -19.88 -0.11 -1.20 16 9 C -0.15 -3.09 9.70 22.28 0.22 -2.88 16 10 C -0.08 -1.79 10.04 22.25 0.22 -1.57 16 11 C -0.22 -6.91 9.04 22.36 0.20 -6.71 16 12 C 0.10 3.83 6.69 22.50 0.15 3.98 16 13 O -0.34 -15.29 10.14 -92.43 -0.94 -16.22 16 14 C 0.09 3.87 4.68 71.98 0.34 4.20 16 15 C 0.03 1.55 5.34 29.85 0.16 1.71 16 16 C -0.55 -31.40 9.11 25.60 0.23 -31.17 16 17 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 18 C 0.00 0.03 5.46 84.65 0.46 0.50 16 19 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 20 Si 0.98 43.86 29.54 68.60 2.03 45.89 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 C -0.15 -4.85 9.64 22.37 0.22 -4.63 16 25 H 0.11 1.19 8.04 -2.91 -0.02 1.17 16 26 H 0.09 1.35 7.99 -2.91 -0.02 1.33 16 27 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.57 8.06 -2.39 -0.02 0.55 16 29 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 30 H 0.06 1.10 7.99 -2.39 -0.02 1.08 16 31 H 0.08 0.94 8.10 -2.39 -0.02 0.92 16 32 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.35 5.40 8.72 -89.69 -0.78 4.61 16 35 H 0.06 0.86 8.08 -2.38 -0.02 0.84 16 36 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 37 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 39 H 0.13 3.89 6.30 -2.91 -0.02 3.87 16 40 H 0.06 2.55 7.67 -2.39 -0.02 2.53 16 41 H 0.06 2.52 7.65 -2.39 -0.02 2.50 16 42 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 45 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -67.73 377.90 2.99 -64.74 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.16 Total: 17.12 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 4.82 Total: -38.81 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -3.08 Total: -72.72 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.94 Total: -16.22 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -67.73 2.99 -64.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449479745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.377 kcal (2) G-P(sol) polarization free energy of solvation -67.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds