Wall clock time and date at job start Tue Mar 31 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47430 * 2 1 4 4 C 1.52998 * 109.61839 * 305.44214 * 3 2 1 5 5 N 1.46497 * 109.47018 * 302.77023 * 4 3 2 6 6 C 1.39681 * 120.00150 * 183.99480 * 5 4 3 7 7 C 1.39335 * 119.95152 * 0.02562 * 6 5 4 8 8 C 1.38485 * 120.42758 * 179.97438 * 7 6 5 9 9 C 1.37687 * 120.31944 * 359.97438 * 8 7 6 10 10 C 1.40746 * 119.89679 * 0.02562 * 9 8 7 11 11 C 1.41404 * 120.21005 * 179.97438 * 10 9 8 12 12 H 1.08008 * 119.99797 * 25.82377 * 11 10 9 13 13 C 1.39929 * 120.00388 * 205.82452 * 11 10 9 14 14 N 1.30829 * 119.99924 * 14.29226 * 13 11 10 15 15 Si 1.86801 * 120.00030 * 194.29392 * 13 11 10 16 16 H 1.48501 * 109.46968 * 94.97022 * 15 13 11 17 17 H 1.48505 * 109.47260 * 214.96596 * 15 13 11 18 18 H 1.48498 * 109.47375 * 334.96695 * 15 13 11 19 19 C 1.38277 * 119.95489 * 179.72810 * 6 5 4 20 20 C 1.53204 * 109.53739 * 65.65737 * 3 2 1 21 21 C 1.53090 * 109.15131 * 62.89177 * 20 3 2 22 22 O 1.42905 * 109.42108 * 57.60592 * 21 20 3 23 23 C 1.42901 * 114.10015 * 298.83234 * 22 21 20 24 24 C 1.53090 * 109.41158 * 61.16013 * 23 22 21 25 25 H 1.09000 * 109.47285 * 184.02246 * 1 2 3 26 26 H 1.09005 * 109.46654 * 304.02222 * 1 2 3 27 27 H 1.09001 * 109.47256 * 64.01447 * 1 2 3 28 28 H 1.09000 * 109.46591 * 240.00547 * 2 1 3 29 29 H 1.08998 * 109.47508 * 120.00925 * 2 1 3 30 30 H 1.08997 * 109.47253 * 62.77464 * 4 3 2 31 31 H 1.09005 * 109.47180 * 182.77113 * 4 3 2 32 32 H 0.96998 * 119.99766 * 4.00167 * 5 4 3 33 33 H 1.08005 * 119.78590 * 0.02562 * 7 6 5 34 34 H 1.07993 * 119.83811 * 179.97438 * 8 7 6 35 35 H 1.08002 * 120.04685 * 180.02562 * 9 8 7 36 36 H 0.97004 * 120.00015 * 179.97438 * 14 13 11 37 37 H 1.08006 * 120.15786 * 359.97438 * 19 6 5 38 38 H 1.08999 * 109.53964 * 302.98693 * 20 3 2 39 39 H 1.09001 * 109.52333 * 182.79243 * 20 3 2 40 40 H 1.08994 * 109.48714 * 297.61671 * 21 20 3 41 41 H 1.08999 * 109.48297 * 177.58956 * 21 20 3 42 42 H 1.08997 * 109.48458 * 181.14213 * 23 22 21 43 43 H 1.08996 * 109.48115 * 301.17321 * 23 22 21 44 44 H 1.08997 * 109.52597 * 62.29933 * 24 23 22 45 45 H 1.09003 * 109.52547 * 182.48893 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4234 2.2054 -1.1741 5 7 1.7467 1.5180 -2.4268 6 6 1.3611 2.0746 -3.6485 7 6 0.6695 3.2840 -3.6746 8 6 0.2830 3.8450 -4.8803 9 6 0.5787 3.2132 -6.0674 10 6 1.2767 1.9911 -6.0568 11 6 1.5834 1.3364 -7.2721 12 1 1.6772 1.9071 -8.1843 13 6 1.7655 -0.0509 -7.2929 14 7 1.3851 -0.7759 -6.2725 15 14 2.5516 -0.8676 -8.7776 16 1 4.0073 -1.0357 -8.5371 17 1 1.9295 -2.1978 -8.9982 18 1 2.3431 -0.0185 -9.9779 19 6 1.6716 1.4279 -4.8306 20 6 1.6498 2.1239 1.3155 21 6 2.3349 1.4010 2.4781 22 8 3.7499 1.4143 2.2782 23 6 4.1772 0.7497 1.0875 24 6 3.5662 1.4463 -0.1312 25 1 -0.3634 -1.0251 0.0721 26 1 -0.3633 0.5750 0.8518 27 1 -0.3634 0.4503 -0.9238 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 0.3412 2.2477 -1.0517 31 1 1.8259 3.2180 -1.2010 32 1 2.2284 0.6763 -2.4078 33 1 0.4341 3.7875 -2.7486 34 1 -0.2530 4.7825 -4.8894 35 1 0.2755 3.6549 -7.0052 36 1 1.5109 -1.7377 -6.2871 37 1 2.2122 0.4930 -4.8118 38 1 0.5684 2.0765 1.4437 39 1 1.9697 3.1657 1.2950 40 1 1.9838 0.3702 2.5229 41 1 2.0952 1.9076 3.4130 42 1 5.2645 0.7872 1.0205 43 1 3.8502 -0.2897 1.1140 44 1 3.9249 2.4744 -0.1810 45 1 3.8552 0.9144 -1.0377 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449700694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:59 Heat of formation + Delta-G solvation = -42.912207 kcal Electronic energy + Delta-G solvation = -23574.060200 eV Core-core repulsion = 20362.187999 eV Total energy + Delta-G solvation = -3211.872201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.33607 -37.79722 -36.38789 -34.01918 -32.88683 -31.36589 -30.61147 -29.38818 -28.56992 -25.83073 -25.19311 -24.26783 -23.20246 -22.35326 -20.89302 -19.83386 -18.21923 -17.18011 -16.60524 -16.10664 -15.64195 -15.32501 -15.02194 -14.77888 -14.62126 -14.44518 -14.05562 -13.46385 -12.98932 -12.74222 -12.67999 -12.57896 -12.22670 -12.17022 -11.96107 -11.71307 -11.54345 -11.38073 -11.11836 -11.01717 -10.82080 -10.72933 -10.52654 -10.41315 -10.29151 -10.15163 -9.60858 -9.41620 -9.40826 -9.22296 -8.71705 -7.25909 -6.67615 -6.11232 -4.29586 2.88782 3.11246 3.15386 3.25688 3.36464 3.77569 4.00052 4.26062 4.59030 4.66789 4.72653 4.77339 4.95725 5.06075 5.12704 5.16060 5.38601 5.44342 5.48486 5.60951 5.69018 5.74372 5.76784 5.83806 5.90503 5.91576 6.05315 6.09045 6.15825 6.28836 6.31418 6.35459 6.46516 6.61450 6.90950 7.08569 7.14382 7.17119 7.42084 7.48095 7.84635 7.99240 8.13884 8.21348 8.52940 8.74672 8.87942 9.04672 9.15213 10.30540 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020155 B = 0.004003 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.930975 B = 6993.296525 C = 7633.619591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.068 4.068 4 C 0.149 3.851 5 N -0.756 5.756 6 C 0.216 3.784 7 C -0.297 4.297 8 C -0.068 4.068 9 C -0.256 4.256 10 C 0.138 3.862 11 C -0.465 4.465 12 H 0.075 0.925 13 C 0.077 3.923 14 N -0.798 5.798 15 Si 0.905 3.095 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.263 1.263 19 C -0.228 4.228 20 C -0.145 4.145 21 C 0.061 3.939 22 O -0.385 6.385 23 C 0.060 3.940 24 C -0.143 4.143 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.388 0.612 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.276 0.724 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 -0.288 14.718 14.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.068 4.068 4 C 0.024 3.976 5 N -0.391 5.391 6 C 0.117 3.883 7 C -0.320 4.320 8 C -0.087 4.087 9 C -0.277 4.277 10 C 0.135 3.865 11 C -0.495 4.495 12 H 0.093 0.907 13 C -0.140 4.140 14 N -0.424 5.424 15 Si 0.730 3.270 16 H -0.196 1.196 17 H -0.204 1.204 18 H -0.187 1.187 19 C -0.252 4.252 20 C -0.183 4.183 21 C -0.016 4.016 22 O -0.304 6.304 23 C -0.017 4.017 24 C -0.181 4.181 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.222 0.778 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.136 0.864 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.039 -0.304 15.038 15.179 hybrid contribution 0.194 -0.871 -0.913 1.277 sum 2.233 -1.175 14.125 14.349 Atomic orbital electron populations 1.21858 0.95481 1.01390 1.02460 1.21626 0.96582 0.95311 1.01750 1.20819 0.95075 0.95964 0.94943 1.21060 0.98426 0.94954 0.83194 1.44415 1.66197 1.26169 1.02280 1.17647 0.93690 0.92089 0.84883 1.19892 1.16120 0.99678 0.96283 1.20283 0.98302 0.97202 0.92890 1.20877 1.10185 1.00976 0.95650 1.17326 0.86643 0.89905 0.92639 1.19570 1.42755 0.91882 0.95302 0.90692 1.25850 0.93169 0.97796 0.97163 1.69856 1.35197 1.06970 1.30371 0.86356 0.79867 0.78670 0.82099 1.19550 1.20437 1.18684 1.20762 1.10934 1.03536 0.89993 1.22216 1.01252 1.00413 0.94375 1.22580 0.81237 0.99797 0.97945 1.87906 1.22158 1.77992 1.42361 1.22622 0.99427 0.95249 0.84387 1.22227 0.94823 1.02356 0.98699 0.93093 0.92939 0.91443 0.91506 0.92213 0.93197 0.93398 0.77778 0.89767 0.89732 0.89466 0.91359 0.86431 0.90414 0.90903 0.93003 0.89195 0.89122 0.93087 0.90904 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.13 37.16 0.34 -1.49 16 2 C -0.12 -1.33 4.13 -26.73 -0.11 -1.44 16 3 C -0.07 -0.80 0.30 -154.31 -0.05 -0.85 16 4 C 0.15 2.24 3.25 -4.04 -0.01 2.23 16 5 N -0.76 -13.86 5.19 -58.69 -0.30 -14.16 16 6 C 0.22 4.97 6.64 -83.86 -0.56 4.41 16 7 C -0.30 -6.76 9.30 -39.08 -0.36 -7.12 16 8 C -0.07 -1.58 10.02 -39.69 -0.40 -1.98 16 9 C -0.26 -6.53 9.79 -38.84 -0.38 -6.91 16 10 C 0.14 3.77 5.57 -106.85 -0.59 3.17 16 11 C -0.46 -12.63 9.06 -37.74 -0.34 -12.97 16 12 H 0.07 1.97 7.89 -52.48 -0.41 1.56 16 13 C 0.08 1.96 5.20 -17.35 -0.09 1.87 16 14 N -0.80 -20.82 10.85 55.55 0.60 -20.22 16 15 Si 0.91 19.03 29.58 -169.99 -5.03 14.00 16 16 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 19 C -0.23 -5.94 8.52 -38.68 -0.33 -6.27 16 20 C -0.14 -1.49 4.76 -26.58 -0.13 -1.61 16 21 C 0.06 0.59 6.57 37.20 0.24 0.84 16 22 O -0.39 -4.55 10.77 -35.23 -0.38 -4.93 16 23 C 0.06 0.64 6.57 37.20 0.24 0.88 16 24 C -0.14 -1.70 4.73 -26.59 -0.13 -1.82 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.54 6.36 -51.93 -0.33 0.21 16 27 H 0.07 0.96 6.66 -51.93 -0.35 0.62 16 28 H 0.07 0.86 6.81 -51.93 -0.35 0.50 16 29 H 0.06 0.62 5.03 -51.93 -0.26 0.36 16 30 H 0.05 0.78 6.57 -51.93 -0.34 0.44 16 31 H 0.05 0.76 7.73 -51.93 -0.40 0.36 16 32 H 0.39 6.85 6.29 -40.82 -0.26 6.60 16 33 H 0.08 1.74 6.70 -52.48 -0.35 1.39 16 34 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 35 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 37 H 0.12 3.16 6.15 -52.48 -0.32 2.84 16 38 H 0.08 0.73 6.39 -51.93 -0.33 0.40 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.47 6.48 -51.93 -0.34 0.14 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.51 6.73 -51.93 -0.35 0.16 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.08 0.97 7.24 -51.93 -0.38 0.59 16 LS Contribution 339.39 15.07 5.11 5.11 Total: -1.00 -28.25 339.39 -9.51 -37.76 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.87 Total: 11.51 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: -2.65 Total: -29.06 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.30 Total: -34.39 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.38 Total: -4.93 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.25 -9.51 -37.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449700694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.156 kcal (2) G-P(sol) polarization free energy of solvation -28.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds