Wall clock time and date at job start Tue Mar 31 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47430 * 2 1 4 4 C 1.52998 * 109.61839 * 305.44214 * 3 2 1 5 5 N 1.46497 * 109.47018 * 302.77023 * 4 3 2 6 6 C 1.39681 * 120.00150 * 183.99480 * 5 4 3 7 7 C 1.39335 * 119.95152 * 0.02562 * 6 5 4 8 8 C 1.38485 * 120.42758 * 179.97438 * 7 6 5 9 9 C 1.37687 * 120.31944 * 359.97438 * 8 7 6 10 10 C 1.40746 * 119.89679 * 0.02562 * 9 8 7 11 11 C 1.41404 * 120.21005 * 179.97438 * 10 9 8 12 12 H 1.08008 * 119.99797 * 25.82377 * 11 10 9 13 13 C 1.39929 * 120.00388 * 205.82452 * 11 10 9 14 14 N 1.30829 * 119.99924 * 14.29226 * 13 11 10 15 15 Si 1.86801 * 120.00030 * 194.29392 * 13 11 10 16 16 H 1.48501 * 109.46968 * 94.97022 * 15 13 11 17 17 H 1.48505 * 109.47260 * 214.96596 * 15 13 11 18 18 H 1.48498 * 109.47375 * 334.96695 * 15 13 11 19 19 C 1.38277 * 119.95489 * 179.72810 * 6 5 4 20 20 C 1.53204 * 109.53739 * 65.65737 * 3 2 1 21 21 C 1.53090 * 109.15131 * 62.89177 * 20 3 2 22 22 O 1.42905 * 109.42108 * 57.60592 * 21 20 3 23 23 C 1.42901 * 114.10015 * 298.83234 * 22 21 20 24 24 C 1.53090 * 109.41158 * 61.16013 * 23 22 21 25 25 H 1.09000 * 109.47285 * 184.02246 * 1 2 3 26 26 H 1.09005 * 109.46654 * 304.02222 * 1 2 3 27 27 H 1.09001 * 109.47256 * 64.01447 * 1 2 3 28 28 H 1.09000 * 109.46591 * 240.00547 * 2 1 3 29 29 H 1.08998 * 109.47508 * 120.00925 * 2 1 3 30 30 H 1.08997 * 109.47253 * 62.77464 * 4 3 2 31 31 H 1.09005 * 109.47180 * 182.77113 * 4 3 2 32 32 H 0.96998 * 119.99766 * 4.00167 * 5 4 3 33 33 H 1.08005 * 119.78590 * 0.02562 * 7 6 5 34 34 H 1.07993 * 119.83811 * 179.97438 * 8 7 6 35 35 H 1.08002 * 120.04685 * 180.02562 * 9 8 7 36 36 H 0.97004 * 120.00015 * 179.97438 * 14 13 11 37 37 H 1.08006 * 120.15786 * 359.97438 * 19 6 5 38 38 H 1.08999 * 109.53964 * 302.98693 * 20 3 2 39 39 H 1.09001 * 109.52333 * 182.79243 * 20 3 2 40 40 H 1.08994 * 109.48714 * 297.61671 * 21 20 3 41 41 H 1.08999 * 109.48297 * 177.58956 * 21 20 3 42 42 H 1.08997 * 109.48458 * 181.14213 * 23 22 21 43 43 H 1.08996 * 109.48115 * 301.17321 * 23 22 21 44 44 H 1.08997 * 109.52597 * 62.29933 * 24 23 22 45 45 H 1.09003 * 109.52547 * 182.48893 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4234 2.2054 -1.1741 5 7 1.7467 1.5180 -2.4268 6 6 1.3611 2.0746 -3.6485 7 6 0.6695 3.2840 -3.6746 8 6 0.2830 3.8450 -4.8803 9 6 0.5787 3.2132 -6.0674 10 6 1.2767 1.9911 -6.0568 11 6 1.5834 1.3364 -7.2721 12 1 1.6772 1.9071 -8.1843 13 6 1.7655 -0.0509 -7.2929 14 7 1.3851 -0.7759 -6.2725 15 14 2.5516 -0.8676 -8.7776 16 1 4.0073 -1.0357 -8.5371 17 1 1.9295 -2.1978 -8.9982 18 1 2.3431 -0.0185 -9.9779 19 6 1.6716 1.4279 -4.8306 20 6 1.6498 2.1239 1.3155 21 6 2.3349 1.4010 2.4781 22 8 3.7499 1.4143 2.2782 23 6 4.1772 0.7497 1.0875 24 6 3.5662 1.4463 -0.1312 25 1 -0.3634 -1.0251 0.0721 26 1 -0.3633 0.5750 0.8518 27 1 -0.3634 0.4503 -0.9238 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 0.3412 2.2477 -1.0517 31 1 1.8259 3.2180 -1.2010 32 1 2.2284 0.6763 -2.4078 33 1 0.4341 3.7875 -2.7486 34 1 -0.2530 4.7825 -4.8894 35 1 0.2755 3.6549 -7.0052 36 1 1.5109 -1.7377 -6.2871 37 1 2.2122 0.4930 -4.8118 38 1 0.5684 2.0765 1.4437 39 1 1.9697 3.1657 1.2950 40 1 1.9838 0.3702 2.5229 41 1 2.0952 1.9076 3.4130 42 1 5.2645 0.7872 1.0205 43 1 3.8502 -0.2897 1.1140 44 1 3.9249 2.4744 -0.1810 45 1 3.8552 0.9144 -1.0377 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449700694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:58 Heat of formation + Delta-G solvation = -57.821481 kcal Electronic energy + Delta-G solvation = -23574.706715 eV Core-core repulsion = 20362.187999 eV Total energy + Delta-G solvation = -3212.518715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30774 -39.50356 -37.59394 -35.72375 -34.56014 -32.27081 -31.51603 -31.31230 -30.14090 -27.23082 -27.04817 -25.24182 -24.17531 -23.44482 -22.70513 -21.60618 -19.26370 -18.99259 -17.93028 -17.07176 -16.91352 -16.55169 -16.43339 -16.25393 -15.91785 -15.76421 -15.26647 -14.74589 -14.56652 -14.23776 -14.11941 -13.94788 -13.55479 -13.35553 -13.16962 -13.04187 -12.80481 -12.72976 -12.62591 -12.47807 -12.22416 -12.10404 -11.76259 -11.68979 -11.53388 -11.38483 -11.19048 -11.07783 -11.02483 -10.46351 -10.31133 -9.22371 -8.58695 -7.86892 -6.32687 1.08960 1.34272 1.38392 1.51399 1.58252 2.23469 2.80705 2.86101 3.00551 3.61335 3.65366 3.76162 3.87921 4.09146 4.16571 4.25499 4.28627 4.49391 4.52119 4.57594 4.61270 4.69675 4.74044 4.76468 4.80389 4.82910 4.87417 4.98213 5.00875 5.05452 5.11205 5.19952 5.21024 5.31598 5.33002 5.37459 5.46284 5.50451 5.62886 5.97311 6.11448 6.23067 6.27199 6.28534 6.59907 6.95926 7.06552 7.08380 7.26666 8.40880 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020155 B = 0.004003 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.930975 B = 6993.296525 C = 7633.619591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.059 4.059 4 C 0.149 3.851 5 N -0.746 5.746 6 C 0.221 3.779 7 C -0.301 4.301 8 C -0.064 4.064 9 C -0.285 4.285 10 C 0.108 3.892 11 C -0.504 4.504 12 H 0.070 0.930 13 C 0.037 3.963 14 N -0.826 5.826 15 Si 0.980 3.020 16 H -0.263 1.263 17 H -0.268 1.268 18 H -0.261 1.261 19 C -0.256 4.256 20 C -0.140 4.140 21 C 0.059 3.941 22 O -0.401 6.401 23 C 0.063 3.937 24 C -0.142 4.142 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.390 0.610 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.284 0.716 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.067 -0.598 16.517 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.060 4.060 4 C 0.024 3.976 5 N -0.378 5.378 6 C 0.120 3.880 7 C -0.324 4.324 8 C -0.083 4.083 9 C -0.305 4.305 10 C 0.105 3.895 11 C -0.534 4.534 12 H 0.088 0.912 13 C -0.177 4.177 14 N -0.452 5.452 15 Si 0.801 3.199 16 H -0.188 1.188 17 H -0.192 1.192 18 H -0.185 1.185 19 C -0.280 4.280 20 C -0.178 4.178 21 C -0.017 4.017 22 O -0.320 6.320 23 C -0.014 4.014 24 C -0.180 4.180 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.225 0.775 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.127 0.873 42 H 0.117 0.883 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.093 -0.610 16.882 17.023 hybrid contribution 0.133 -0.718 -1.344 1.530 sum 2.226 -1.328 15.538 15.753 Atomic orbital electron populations 1.21824 0.95469 1.01850 1.01742 1.21599 0.96480 0.94953 1.01866 1.20744 0.94809 0.95942 0.94471 1.21227 0.98687 0.94923 0.82746 1.44481 1.65123 1.26140 1.02106 1.17755 0.92572 0.91974 0.85718 1.20216 1.15440 0.99481 0.97224 1.20638 0.97405 0.98020 0.92227 1.21028 1.11496 1.01245 0.96780 1.17715 0.87403 0.90999 0.93378 1.19814 1.45101 0.93187 0.95338 0.91226 1.26674 0.92979 0.97742 1.00336 1.69916 1.35500 1.07588 1.32199 0.85235 0.78928 0.77704 0.78040 1.18790 1.19230 1.18471 1.20681 1.12612 1.03675 0.91024 1.22204 1.02147 1.00068 0.93413 1.22740 0.80161 1.00556 0.98283 1.87897 1.23406 1.78201 1.42463 1.22634 0.99968 0.95382 0.83407 1.22193 0.94920 1.01781 0.99087 0.92538 0.90978 0.94321 0.93211 0.90251 0.93137 0.93854 0.77480 0.87226 0.86548 0.89338 0.90596 0.88119 0.89139 0.91258 0.91975 0.87343 0.88251 0.92107 0.91941 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.13 71.98 0.66 -2.65 16 2 C -0.11 -2.38 4.13 30.59 0.13 -2.25 16 3 C -0.06 -1.30 0.30 -52.05 -0.02 -1.32 16 4 C 0.15 4.30 3.25 86.38 0.28 4.58 16 5 N -0.75 -27.38 5.19 -339.59 -1.76 -29.14 16 6 C 0.22 10.31 6.64 38.16 0.25 10.56 16 7 C -0.30 -13.46 9.30 22.59 0.21 -13.25 16 8 C -0.06 -2.96 10.02 22.20 0.22 -2.74 16 9 C -0.28 -14.87 9.79 22.75 0.22 -14.65 16 10 C 0.11 6.13 5.57 -21.31 -0.12 6.01 16 11 C -0.50 -28.52 9.06 23.46 0.21 -28.30 16 12 H 0.07 3.84 7.89 -2.91 -0.02 3.81 16 13 C 0.04 1.91 5.20 85.25 0.44 2.36 16 14 N -0.83 -44.24 10.85 21.82 0.24 -44.00 16 15 Si 0.98 39.56 29.58 68.60 2.03 41.58 16 16 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 17 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 18 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 19 C -0.26 -13.79 8.52 22.86 0.19 -13.60 16 20 C -0.14 -2.51 4.76 30.69 0.15 -2.36 16 21 C 0.06 0.95 6.57 72.01 0.47 1.43 16 22 O -0.40 -8.44 10.77 -148.98 -1.60 -10.04 16 23 C 0.06 1.21 6.57 72.01 0.47 1.68 16 24 C -0.14 -3.21 4.73 30.68 0.15 -3.06 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.27 6.36 -2.38 -0.02 1.26 16 27 H 0.04 1.06 6.66 -2.39 -0.02 1.05 16 28 H 0.05 1.24 6.81 -2.39 -0.02 1.22 16 29 H 0.08 1.41 5.03 -2.39 -0.01 1.40 16 30 H 0.05 1.49 6.57 -2.39 -0.02 1.48 16 31 H 0.04 1.32 7.73 -2.38 -0.02 1.30 16 32 H 0.39 14.01 6.29 -92.71 -0.58 13.43 16 33 H 0.11 4.30 6.70 -2.91 -0.02 4.28 16 34 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.28 13.74 8.30 -92.71 -0.77 12.97 16 37 H 0.10 5.67 6.15 -2.91 -0.02 5.66 16 38 H 0.09 1.40 6.39 -2.39 -0.02 1.39 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.06 0.90 6.48 -2.39 -0.02 0.88 16 41 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.06 1.06 6.73 -2.39 -0.02 1.04 16 44 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.07 1.63 7.24 -2.39 -0.02 1.61 16 Total: -1.00 -62.40 339.39 3.23 -59.16 By element: Atomic # 1 Polarization: 39.60 SS G_CDS: 0.41 Total: 40.01 kcal Atomic # 6 Polarization: -61.50 SS G_CDS: 3.93 Total: -57.57 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -1.52 Total: -73.14 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -1.60 Total: -10.04 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.58 kcal Total: -62.40 3.23 -59.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449700694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.343 kcal (2) G-P(sol) polarization free energy of solvation -62.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds