Wall clock time and date at job start Tue Mar 31 2020 06:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46923 * 2 1 4 4 C 1.52999 * 109.46938 * 240.00457 * 2 1 3 5 5 C 1.52996 * 109.46900 * 120.00386 * 2 1 3 6 6 C 1.53000 * 109.47218 * 59.99768 * 5 2 1 7 7 C 1.53005 * 109.46937 * 179.97438 * 6 5 2 8 8 C 1.50704 * 109.46887 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99917 * 0.02562 * 8 7 6 10 10 N 1.34769 * 119.99630 * 180.02562 * 8 7 6 11 11 C 1.39941 * 119.99795 * 174.89203 * 10 8 7 12 12 C 1.39292 * 119.94690 * 145.78387 * 11 10 8 13 13 C 1.38484 * 120.43010 * 179.97438 * 12 11 10 14 14 C 1.37694 * 120.31840 * 359.97438 * 13 12 11 15 15 C 1.40738 * 119.88391 * 0.02562 * 14 13 12 16 16 C 1.41409 * 120.20349 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99538 * 205.17748 * 16 15 14 18 18 C 1.39928 * 120.00795 * 25.17607 * 16 15 14 19 19 N 1.30837 * 119.99653 * 16.78957 * 18 16 15 20 20 Si 1.86796 * 120.00405 * 196.79614 * 18 16 15 21 21 H 1.48495 * 109.47309 * 89.99690 * 20 18 16 22 22 H 1.48500 * 109.47271 * 209.99627 * 20 18 16 23 23 H 1.48498 * 109.46980 * 329.99690 * 20 18 16 24 24 C 1.38236 * 119.94544 * 325.51040 * 11 10 8 25 25 H 1.08993 * 109.47474 * 299.99906 * 1 2 3 26 26 H 1.09000 * 109.46918 * 60.00028 * 1 2 3 27 27 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46747 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47692 * 300.00107 * 3 2 1 30 30 H 1.09005 * 109.47004 * 60.00145 * 3 2 1 31 31 H 1.09006 * 109.47350 * 299.99652 * 4 2 1 32 32 H 1.09000 * 109.47712 * 60.00001 * 4 2 1 33 33 H 1.09001 * 109.46752 * 180.02562 * 4 2 1 34 34 H 1.09005 * 109.47095 * 299.99896 * 5 2 1 35 35 H 1.08997 * 109.46772 * 179.97438 * 5 2 1 36 36 H 1.09005 * 109.46983 * 60.00059 * 6 5 2 37 37 H 1.08997 * 109.47403 * 299.99803 * 6 5 2 38 38 H 1.08997 * 109.47149 * 300.00248 * 7 6 5 39 39 H 1.09002 * 109.46517 * 60.00396 * 7 6 5 40 40 H 0.97002 * 120.00209 * 354.88726 * 10 8 7 41 41 H 1.08004 * 119.78598 * 359.97438 * 12 11 10 42 42 H 1.07997 * 119.84624 * 179.97438 * 13 12 11 43 43 H 1.07998 * 120.05402 * 179.97438 * 14 13 12 44 44 H 0.97000 * 119.99997 * 180.02562 * 19 18 16 45 45 H 1.07999 * 120.16765 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5299 -2.1638 1.2491 7 6 2.0405 -2.8853 2.4981 8 6 1.5386 -4.3063 2.4977 9 8 0.8416 -4.7030 1.5878 10 7 1.8642 -5.1362 3.5084 11 6 1.3126 -6.4211 3.5641 12 6 2.0645 -7.4793 4.0690 13 6 1.5284 -8.7547 4.1292 14 6 0.2447 -8.9905 3.6906 15 6 -0.5269 -7.9310 3.1779 16 6 -1.8458 -8.1657 2.7251 17 1 -2.2880 -7.5117 1.9880 18 6 -2.5781 -9.2450 3.2319 19 7 -2.1960 -9.8340 4.3359 20 14 -4.1011 -9.8452 2.3321 21 1 -3.7159 -10.8890 1.3487 22 1 -5.0609 -10.4169 3.3104 23 1 -4.7372 -8.7067 1.6219 24 6 0.0203 -6.6369 3.1232 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2494 32 1 1.6767 -0.2073 -2.1393 33 1 3.1300 -0.7215 -1.2490 34 1 1.6766 -0.2075 2.1392 35 1 3.1300 -0.7217 1.2489 36 1 1.8933 -2.6776 0.3591 37 1 0.4400 -2.1638 1.2491 38 1 3.1304 -2.8853 2.4976 39 1 1.6774 -2.3716 3.3882 40 1 2.4810 -4.8429 4.1972 41 1 3.0722 -7.3040 4.4158 42 1 2.1199 -9.5684 4.5221 43 1 -0.1691 -9.9870 3.7391 44 1 -2.7033 -10.5824 4.6870 45 1 -0.5652 -5.8162 2.7360 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456727466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:42 Heat of formation + Delta-G solvation = -52.512092 kcal Electronic energy + Delta-G solvation = -22386.321914 eV Core-core repulsion = 19174.033431 eV Total energy + Delta-G solvation = -3212.288483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.72085 -38.22787 -37.09723 -34.41663 -33.12589 -32.87111 -29.79435 -28.66038 -27.46851 -27.39052 -26.75074 -25.26404 -22.68506 -21.11203 -20.68548 -19.46510 -18.74109 -17.66217 -16.51848 -15.79641 -15.53938 -15.16598 -14.78019 -14.65633 -14.49263 -14.19619 -13.81150 -13.52655 -13.03977 -12.88930 -12.65424 -12.38561 -12.11049 -11.85442 -11.81120 -11.72051 -11.69408 -11.60836 -11.14572 -11.11796 -10.93221 -10.88095 -10.59122 -10.53332 -10.43811 -10.42215 -10.11339 -9.61672 -9.34887 -9.04152 -8.89563 -7.42496 -6.88216 -6.68556 -4.31306 2.65037 2.86804 3.11039 3.16006 3.22737 3.43003 3.70840 3.98797 4.57253 4.66207 4.67231 4.67765 5.01830 5.07355 5.15050 5.39109 5.41958 5.44071 5.60629 5.63411 5.64741 5.64822 5.73690 5.75936 5.78450 5.87044 5.95570 6.07012 6.15002 6.19485 6.27335 6.35871 6.41835 6.45365 6.82320 7.05545 7.08824 7.10891 7.28387 7.60426 7.76616 8.00648 8.12425 8.22559 8.30717 8.66709 8.80075 8.97214 9.01825 10.24293 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.003203 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.693473 B = 8740.140393 C = 9901.027691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.146 4.146 5 C -0.108 4.108 6 C -0.108 4.108 7 C -0.139 4.139 8 C 0.501 3.499 9 O -0.519 6.519 10 N -0.672 5.672 11 C 0.151 3.849 12 C -0.263 4.263 13 C -0.093 4.093 14 C -0.173 4.173 15 C 0.119 3.881 16 C -0.459 4.459 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.796 5.796 20 Si 0.909 3.091 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.210 4.210 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.397 0.603 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.279 0.721 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.757 16.043 -3.546 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.070 4.070 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.146 4.146 6 C -0.146 4.146 7 C -0.179 4.179 8 C 0.288 3.712 9 O -0.394 6.394 10 N -0.316 5.316 11 C 0.060 3.940 12 C -0.284 4.284 13 C -0.112 4.112 14 C -0.192 4.192 15 C 0.116 3.884 16 C -0.488 4.488 17 H 0.096 0.904 18 C -0.142 4.142 19 N -0.422 5.422 20 Si 0.733 3.267 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.231 4.231 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.231 0.769 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.137 0.863 44 H 0.090 0.910 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.161 15.626 -4.047 17.659 hybrid contribution -0.281 -0.201 0.199 0.398 sum 6.880 15.425 -3.848 17.323 Atomic orbital electron populations 1.21957 0.94559 1.02485 1.01345 1.20533 0.95840 0.95078 0.95545 1.21873 1.00757 0.95629 1.01519 1.21952 1.00737 1.00946 0.96656 1.21662 1.00340 0.95368 0.97213 1.21484 1.02002 0.94102 0.97023 1.21692 1.02206 0.92909 1.01108 1.20726 0.81096 0.87536 0.81855 1.90742 1.36889 1.76772 1.34961 1.43541 1.47197 1.14138 1.26712 1.17453 0.92642 0.82403 1.01530 1.20048 0.98791 0.93018 1.16556 1.20465 0.95835 0.94732 1.00156 1.21347 0.92918 0.99698 1.05283 1.17496 0.92657 0.89782 0.88421 1.19589 0.97981 1.10002 1.21255 0.90378 1.25902 0.99242 0.95288 0.93740 1.69834 1.37943 1.18548 1.15851 0.86302 0.80586 0.79775 0.80001 1.19281 1.20372 1.18596 1.20962 0.93846 0.97290 1.11017 0.92806 0.93013 0.91775 0.92846 0.92857 0.92815 0.91818 0.93007 0.92869 0.92009 0.92070 0.90862 0.90755 0.89409 0.89219 0.76905 0.89369 0.89088 0.86332 0.90978 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.12 37.16 0.30 -1.07 16 2 C -0.07 -0.62 0.80 -154.51 -0.12 -0.74 16 3 C -0.14 -1.06 8.47 37.16 0.31 -0.75 16 4 C -0.15 -1.33 8.12 37.16 0.30 -1.03 16 5 C -0.11 -0.98 4.27 -26.73 -0.11 -1.09 16 6 C -0.11 -1.27 3.80 -26.73 -0.10 -1.37 16 7 C -0.14 -1.63 5.70 -27.88 -0.16 -1.79 16 8 C 0.50 8.84 7.56 -10.99 -0.08 8.75 16 9 O -0.52 -11.58 13.74 5.55 0.08 -11.50 16 10 N -0.67 -12.08 5.34 -9.91 -0.05 -12.13 16 11 C 0.15 3.50 6.25 -83.76 -0.52 2.97 16 12 C -0.26 -5.90 9.97 -39.10 -0.39 -6.29 16 13 C -0.09 -2.21 10.02 -39.69 -0.40 -2.61 16 14 C -0.17 -4.62 8.69 -38.84 -0.34 -4.96 16 15 C 0.12 3.35 5.57 -106.85 -0.59 2.75 16 16 C -0.46 -12.79 9.05 -37.74 -0.34 -13.13 16 17 H 0.08 2.15 7.90 -52.48 -0.41 1.74 16 18 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 19 N -0.80 -21.00 10.94 55.55 0.61 -20.39 16 20 Si 0.91 19.35 29.59 -169.99 -5.03 14.32 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 24 C -0.21 -5.54 8.39 -38.69 -0.32 -5.87 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.95 6.39 -51.93 -0.33 0.62 16 37 H 0.07 0.99 6.39 -51.93 -0.33 0.65 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.40 5.48 8.82 -40.82 -0.36 5.12 16 41 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 42 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 43 H 0.12 3.24 6.17 -52.49 -0.32 2.92 16 44 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 45 H 0.10 2.85 6.48 -52.49 -0.34 2.51 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -30.89 359.83 -9.04 -39.93 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.40 Total: 8.72 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: -2.66 Total: -24.36 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.55 Total: -32.53 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.89 -9.04 -39.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456727466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.582 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds