Wall clock time and date at job start Tue Mar 31 2020 06:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46923 * 2 1 4 4 C 1.52999 * 109.46938 * 240.00457 * 2 1 3 5 5 C 1.52996 * 109.46900 * 120.00386 * 2 1 3 6 6 C 1.53000 * 109.47218 * 59.99768 * 5 2 1 7 7 C 1.53005 * 109.46937 * 179.97438 * 6 5 2 8 8 C 1.50704 * 109.46887 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99917 * 0.02562 * 8 7 6 10 10 N 1.34769 * 119.99630 * 180.02562 * 8 7 6 11 11 C 1.39941 * 119.99795 * 174.89203 * 10 8 7 12 12 C 1.39292 * 119.94690 * 145.78387 * 11 10 8 13 13 C 1.38484 * 120.43010 * 179.97438 * 12 11 10 14 14 C 1.37694 * 120.31840 * 359.97438 * 13 12 11 15 15 C 1.40738 * 119.88391 * 0.02562 * 14 13 12 16 16 C 1.41409 * 120.20349 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99538 * 205.17748 * 16 15 14 18 18 C 1.39928 * 120.00795 * 25.17607 * 16 15 14 19 19 N 1.30837 * 119.99653 * 16.78957 * 18 16 15 20 20 Si 1.86796 * 120.00405 * 196.79614 * 18 16 15 21 21 H 1.48495 * 109.47309 * 89.99690 * 20 18 16 22 22 H 1.48500 * 109.47271 * 209.99627 * 20 18 16 23 23 H 1.48498 * 109.46980 * 329.99690 * 20 18 16 24 24 C 1.38236 * 119.94544 * 325.51040 * 11 10 8 25 25 H 1.08993 * 109.47474 * 299.99906 * 1 2 3 26 26 H 1.09000 * 109.46918 * 60.00028 * 1 2 3 27 27 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46747 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47692 * 300.00107 * 3 2 1 30 30 H 1.09005 * 109.47004 * 60.00145 * 3 2 1 31 31 H 1.09006 * 109.47350 * 299.99652 * 4 2 1 32 32 H 1.09000 * 109.47712 * 60.00001 * 4 2 1 33 33 H 1.09001 * 109.46752 * 180.02562 * 4 2 1 34 34 H 1.09005 * 109.47095 * 299.99896 * 5 2 1 35 35 H 1.08997 * 109.46772 * 179.97438 * 5 2 1 36 36 H 1.09005 * 109.46983 * 60.00059 * 6 5 2 37 37 H 1.08997 * 109.47403 * 299.99803 * 6 5 2 38 38 H 1.08997 * 109.47149 * 300.00248 * 7 6 5 39 39 H 1.09002 * 109.46517 * 60.00396 * 7 6 5 40 40 H 0.97002 * 120.00209 * 354.88726 * 10 8 7 41 41 H 1.08004 * 119.78598 * 359.97438 * 12 11 10 42 42 H 1.07997 * 119.84624 * 179.97438 * 13 12 11 43 43 H 1.07998 * 120.05402 * 179.97438 * 14 13 12 44 44 H 0.97000 * 119.99997 * 180.02562 * 19 18 16 45 45 H 1.07999 * 120.16765 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5299 -2.1638 1.2491 7 6 2.0405 -2.8853 2.4981 8 6 1.5386 -4.3063 2.4977 9 8 0.8416 -4.7030 1.5878 10 7 1.8642 -5.1362 3.5084 11 6 1.3126 -6.4211 3.5641 12 6 2.0645 -7.4793 4.0690 13 6 1.5284 -8.7547 4.1292 14 6 0.2447 -8.9905 3.6906 15 6 -0.5269 -7.9310 3.1779 16 6 -1.8458 -8.1657 2.7251 17 1 -2.2880 -7.5117 1.9880 18 6 -2.5781 -9.2450 3.2319 19 7 -2.1960 -9.8340 4.3359 20 14 -4.1011 -9.8452 2.3321 21 1 -3.7159 -10.8890 1.3487 22 1 -5.0609 -10.4169 3.3104 23 1 -4.7372 -8.7067 1.6219 24 6 0.0203 -6.6369 3.1232 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2494 32 1 1.6767 -0.2073 -2.1393 33 1 3.1300 -0.7215 -1.2490 34 1 1.6766 -0.2075 2.1392 35 1 3.1300 -0.7217 1.2489 36 1 1.8933 -2.6776 0.3591 37 1 0.4400 -2.1638 1.2491 38 1 3.1304 -2.8853 2.4976 39 1 1.6774 -2.3716 3.3882 40 1 2.4810 -4.8429 4.1972 41 1 3.0722 -7.3040 4.4158 42 1 2.1199 -9.5684 4.5221 43 1 -0.1691 -9.9870 3.7391 44 1 -2.7033 -10.5824 4.6870 45 1 -0.5652 -5.8162 2.7360 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456727466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:42 Heat of formation + Delta-G solvation = -69.341672 kcal Electronic energy + Delta-G solvation = -22387.051699 eV Core-core repulsion = 19174.033431 eV Total energy + Delta-G solvation = -3213.018268 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23525 -39.26697 -38.68377 -36.20146 -34.82646 -33.99981 -31.76654 -30.26707 -28.16108 -28.13928 -27.87620 -27.24407 -23.95384 -22.84524 -22.31339 -20.98048 -19.54132 -19.47565 -17.95420 -17.40207 -16.95066 -16.73440 -16.44925 -15.79419 -15.62644 -15.13295 -14.94422 -14.91776 -14.62580 -14.52217 -13.99079 -13.55401 -13.37120 -13.23689 -12.99019 -12.91863 -12.79104 -12.67188 -12.54060 -12.50624 -12.44895 -12.19594 -11.96367 -11.71996 -11.53658 -11.35645 -11.29230 -11.24178 -11.15040 -10.86218 -10.57566 -9.41436 -8.75879 -8.61516 -6.39087 0.87123 0.98928 1.34607 1.47386 1.48264 1.85503 2.19411 2.31890 2.72132 3.68975 3.78798 3.81199 3.95324 4.04089 4.20841 4.28942 4.45570 4.62074 4.64376 4.68253 4.69069 4.80291 4.85628 4.88473 4.96648 4.99359 5.04864 5.08407 5.11052 5.12338 5.13084 5.24107 5.25859 5.26448 5.32128 5.38699 5.49913 5.57749 5.62560 5.76587 5.86171 6.06489 6.10082 6.33933 6.66676 6.69861 6.92230 6.99937 7.39668 8.31725 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.003203 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.693473 B = 8740.140393 C = 9901.027691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 C -0.136 4.136 4 C -0.145 4.145 5 C -0.100 4.100 6 C -0.106 4.106 7 C -0.124 4.124 8 C 0.494 3.506 9 O -0.573 6.573 10 N -0.662 5.662 11 C 0.158 3.842 12 C -0.253 4.253 13 C -0.092 4.092 14 C -0.200 4.200 15 C 0.088 3.912 16 C -0.504 4.504 17 H 0.061 0.939 18 C 0.038 3.962 19 N -0.822 5.822 20 Si 0.982 3.018 21 H -0.260 1.260 22 H -0.260 1.260 23 H -0.265 1.265 24 C -0.238 4.238 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.125 0.875 39 H 0.118 0.882 40 H 0.422 0.578 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.290 0.710 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.781 17.437 -2.606 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.193 4.193 4 C -0.203 4.203 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.164 4.164 8 C 0.284 3.716 9 O -0.451 6.451 10 N -0.308 5.308 11 C 0.064 3.936 12 C -0.274 4.274 13 C -0.110 4.110 14 C -0.220 4.220 15 C 0.086 3.914 16 C -0.533 4.533 17 H 0.079 0.921 18 C -0.177 4.177 19 N -0.448 5.448 20 Si 0.803 3.197 21 H -0.184 1.184 22 H -0.184 1.184 23 H -0.189 1.189 24 C -0.260 4.260 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.143 0.857 39 H 0.136 0.864 40 H 0.260 0.740 41 H 0.150 0.850 42 H 0.141 0.859 43 H 0.122 0.878 44 H 0.100 0.900 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.233 17.054 -3.068 19.635 hybrid contribution -0.795 -0.567 -0.078 0.980 sum 8.438 16.488 -3.146 18.787 Atomic orbital electron populations 1.21958 0.95428 1.01157 1.01849 1.20563 0.95166 0.96142 0.95305 1.21827 1.01269 0.94275 1.01974 1.21945 1.01263 0.99808 0.97242 1.21617 1.01249 0.93146 0.97743 1.21439 1.00547 0.96000 0.96437 1.21750 1.04210 0.88293 1.02115 1.21907 0.79720 0.89436 0.80537 1.90735 1.39220 1.78087 1.37098 1.43499 1.47252 1.12380 1.27681 1.17560 0.91509 0.85022 0.99477 1.20500 1.00301 0.91952 1.14613 1.20856 0.94861 0.96550 0.98783 1.21313 0.94494 0.98766 1.07433 1.17842 0.93319 0.90903 0.89372 1.19736 0.99065 1.11916 1.22615 0.92066 1.26702 1.02261 0.94595 0.94157 1.69860 1.39397 1.18918 1.16606 0.85215 0.76601 0.79017 0.78907 1.18441 1.18434 1.18932 1.20923 0.95723 0.96297 1.13041 0.92238 0.92594 0.94004 0.91963 0.92654 0.92190 0.93909 0.92637 0.91951 0.90750 0.90349 0.92730 0.93253 0.85714 0.86350 0.74001 0.84963 0.85875 0.87780 0.89964 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.12 71.98 0.58 -2.14 16 2 C -0.07 -1.16 0.80 -52.18 -0.04 -1.21 16 3 C -0.14 -1.71 8.47 71.98 0.61 -1.10 16 4 C -0.15 -2.56 8.12 71.98 0.58 -1.98 16 5 C -0.10 -1.57 4.27 30.59 0.13 -1.43 16 6 C -0.11 -2.41 3.80 30.60 0.12 -2.29 16 7 C -0.12 -2.59 5.70 29.85 0.17 -2.42 16 8 C 0.49 17.11 7.56 87.66 0.66 17.77 16 9 O -0.57 -26.65 13.74 -3.04 -0.04 -26.69 16 10 N -0.66 -22.63 5.34 -303.66 -1.62 -24.25 16 11 C 0.16 7.22 6.25 38.10 0.24 7.46 16 12 C -0.25 -10.77 9.97 22.58 0.23 -10.55 16 13 C -0.09 -4.27 10.02 22.20 0.22 -4.05 16 14 C -0.20 -11.02 8.69 22.75 0.20 -10.82 16 15 C 0.09 5.21 5.57 -21.31 -0.12 5.09 16 16 C -0.50 -29.90 9.05 23.46 0.21 -29.69 16 17 H 0.06 3.67 7.90 -2.91 -0.02 3.64 16 18 C 0.04 2.02 5.16 85.25 0.44 2.46 16 19 N -0.82 -44.56 10.94 21.82 0.24 -44.33 16 20 Si 0.98 40.79 29.59 68.60 2.03 42.82 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 C -0.24 -13.17 8.39 22.85 0.19 -12.98 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.04 0.95 6.43 -2.39 -0.02 0.93 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.04 0.92 6.43 -2.38 -0.02 0.91 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.05 1.44 6.39 -2.38 -0.02 1.42 16 37 H 0.05 1.36 6.39 -2.39 -0.02 1.34 16 38 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.42 10.11 8.82 -92.71 -0.82 9.29 16 41 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 42 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 43 H 0.10 5.92 6.17 -2.91 -0.02 5.90 16 44 H 0.29 14.03 8.30 -92.71 -0.77 13.27 16 45 H 0.08 4.79 6.48 -2.91 -0.02 4.77 16 Total: -1.00 -72.65 359.83 5.18 -67.47 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: 0.15 Total: 32.86 kcal Atomic # 6 Polarization: -52.30 SS G_CDS: 4.43 Total: -47.88 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: -1.38 Total: -68.58 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.04 Total: -26.69 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -72.65 5.18 -67.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456727466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.875 kcal (2) G-P(sol) polarization free energy of solvation -72.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds