Wall clock time and date at job start Tue Mar 31 2020 06:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46851 * 2 1 4 4 C 1.52994 * 109.47097 * 120.00420 * 2 1 3 5 5 C 1.52993 * 109.47460 * 63.60957 * 4 2 1 6 6 C 1.52998 * 109.47285 * 163.27023 * 5 4 2 7 7 C 1.53007 * 109.46890 * 43.27062 * 5 4 2 8 8 C 1.50705 * 109.47400 * 283.27163 * 5 4 2 9 9 O 1.21280 * 119.99585 * 349.89047 * 8 5 4 10 10 N 1.34772 * 119.99903 * 169.89301 * 8 5 4 11 11 C 1.39941 * 119.99575 * 175.45336 * 10 8 5 12 12 C 1.39293 * 119.94353 * 145.89177 * 11 10 8 13 13 C 1.38489 * 120.42759 * 179.97438 * 12 11 10 14 14 C 1.37687 * 120.32145 * 0.26695 * 13 12 11 15 15 C 1.40748 * 119.88135 * 359.46331 * 14 13 12 16 16 C 1.41407 * 120.21086 * 180.27641 * 15 14 13 17 17 H 1.07994 * 119.99948 * 213.56649 * 16 15 14 18 18 C 1.39936 * 119.99898 * 33.55388 * 16 15 14 19 19 N 1.30822 * 120.00100 * 6.19770 * 18 16 15 20 20 Si 1.86803 * 119.99954 * 186.19194 * 18 16 15 21 21 H 1.48500 * 109.46874 * 60.00365 * 20 18 16 22 22 H 1.48490 * 109.46995 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47072 * 300.00427 * 20 18 16 24 24 C 1.38234 * 119.94971 * 325.86590 * 11 10 8 25 25 H 1.09000 * 109.47099 * 293.59741 * 1 2 3 26 26 H 1.09004 * 109.47142 * 53.59990 * 1 2 3 27 27 H 1.08998 * 109.46862 * 173.59612 * 1 2 3 28 28 H 1.08999 * 109.47060 * 240.00316 * 2 1 3 29 29 H 1.08998 * 109.47130 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47727 * 300.00361 * 3 2 1 31 31 H 1.08999 * 109.47031 * 60.00298 * 3 2 1 32 32 H 1.09000 * 109.47338 * 303.61012 * 4 2 1 33 33 H 1.09004 * 109.47263 * 183.61181 * 4 2 1 34 34 H 1.09003 * 109.47325 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.47187 * 300.00334 * 6 5 4 36 36 H 1.08995 * 109.47114 * 60.00176 * 6 5 4 37 37 H 1.08997 * 109.47043 * 302.59196 * 7 5 4 38 38 H 1.09000 * 109.47106 * 62.60057 * 7 5 4 39 39 H 1.09002 * 109.47113 * 182.59410 * 7 5 4 40 40 H 0.96994 * 120.00304 * 355.45160 * 10 8 5 41 41 H 1.08001 * 119.79056 * 359.97438 * 12 11 10 42 42 H 1.08001 * 119.83933 * 179.97438 * 13 12 11 43 43 H 1.07991 * 120.05789 * 179.70231 * 14 13 12 44 44 H 0.96999 * 120.00286 * 179.97438 * 19 18 16 45 45 H 1.07999 * 120.16048 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6056 -2.1876 1.2045 6 6 2.4385 -2.9969 2.2006 7 6 1.8190 -2.7400 -0.2063 8 6 0.1469 -2.2907 1.5690 9 8 -0.4367 -1.3250 2.0137 10 7 -0.5089 -3.4560 1.4009 11 6 -1.8361 -3.5798 1.8271 12 6 -2.7243 -4.3797 1.1120 13 6 -4.0397 -4.5097 1.5252 14 6 -4.4855 -3.8446 2.6453 15 6 -3.5979 -3.0374 3.3811 16 6 -4.0468 -2.3559 4.5360 17 1 -3.6349 -1.3896 4.7870 18 6 -5.0248 -2.9334 5.3533 19 7 -5.4363 -4.1529 5.1192 20 14 -5.7428 -1.9629 6.7789 21 1 -6.3893 -0.7298 6.2624 22 1 -6.7518 -2.7931 7.4844 23 1 -4.6576 -1.5946 7.7233 24 6 -2.2633 -2.9085 2.9575 25 1 -0.3633 0.4114 0.9417 26 1 -0.3633 0.6099 -0.8272 27 1 -0.3633 -1.0213 -0.1146 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6248 -0.2463 2.1380 33 1 3.1281 -0.6656 1.2821 34 1 2.1293 -4.0416 2.1684 35 1 3.4936 -2.9223 1.9370 36 1 2.2865 -2.6033 3.2055 37 1 1.2619 -2.1350 -0.9215 38 1 2.8804 -2.7081 -0.4522 39 1 1.4668 -3.7706 -0.2501 40 1 -0.0611 -4.2089 0.9844 41 1 -2.3851 -4.9019 0.2296 42 1 -4.7204 -5.1321 0.9633 43 1 -5.5133 -3.9453 2.9609 44 1 -6.1140 -4.5534 5.6860 45 1 -1.5751 -2.2887 3.5131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456748014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:45 Heat of formation + Delta-G solvation = -35.089286 kcal Electronic energy + Delta-G solvation = -23754.320032 eV Core-core repulsion = 20542.787059 eV Total energy + Delta-G solvation = -3211.532973 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52690 -37.79413 -36.26797 -34.55009 -33.73900 -32.71860 -29.76774 -28.19360 -27.66791 -26.66531 -26.48728 -25.24223 -23.30564 -21.12973 -20.68552 -19.86207 -18.50758 -17.66008 -16.54889 -15.68046 -15.48863 -15.10734 -14.83431 -14.56942 -14.14135 -13.86216 -13.48902 -13.01800 -12.84482 -12.81322 -12.48147 -12.44124 -12.20161 -12.13579 -11.77679 -11.71084 -11.52394 -11.40733 -11.17022 -11.08660 -10.92403 -10.84881 -10.59590 -10.44088 -10.35095 -10.08226 -10.05630 -9.53133 -9.30078 -9.05128 -8.73829 -7.34773 -6.85577 -6.58333 -4.32090 2.65882 2.89189 3.12495 3.16781 3.22593 3.43322 3.69478 4.02932 4.59651 4.73631 4.80696 4.81684 5.07693 5.17840 5.22529 5.40761 5.49305 5.59572 5.67629 5.70799 5.73738 5.83405 5.86005 5.88303 6.02098 6.07260 6.09925 6.20392 6.25873 6.30137 6.36689 6.39331 6.49683 6.73691 6.92527 7.04690 7.09136 7.12004 7.31796 7.61162 7.76966 7.99325 8.15237 8.22541 8.32313 8.69926 8.81872 9.00161 9.02560 10.35048 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019450 B = 0.004320 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.208006 B = 6480.009094 C = 7076.354700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.095 4.095 5 C -0.081 4.081 6 C -0.139 4.139 7 C -0.148 4.148 8 C 0.514 3.486 9 O -0.508 6.508 10 N -0.669 5.669 11 C 0.148 3.852 12 C -0.254 4.254 13 C -0.097 4.097 14 C -0.160 4.160 15 C 0.120 3.880 16 C -0.464 4.464 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.811 5.811 20 Si 0.911 3.089 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.267 1.267 24 C -0.201 4.201 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.395 0.605 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.118 0.882 44 H 0.278 0.722 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.591 2.203 -8.172 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.133 4.133 5 C -0.085 4.085 6 C -0.196 4.196 7 C -0.205 4.205 8 C 0.300 3.700 9 O -0.383 6.383 10 N -0.313 5.313 11 C 0.057 3.943 12 C -0.275 4.275 13 C -0.116 4.116 14 C -0.180 4.180 15 C 0.118 3.882 16 C -0.495 4.495 17 H 0.094 0.906 18 C -0.142 4.142 19 N -0.438 5.438 20 Si 0.736 3.264 21 H -0.190 1.190 22 H -0.205 1.205 23 H -0.192 1.192 24 C -0.222 4.222 25 H 0.096 0.904 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.229 0.771 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.136 0.864 44 H 0.089 0.911 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 13.045 2.744 -7.734 15.411 hybrid contribution -0.150 -0.225 0.435 0.512 sum 12.895 2.519 -7.299 15.030 Atomic orbital electron populations 1.22202 0.94139 1.01706 1.02165 1.21227 0.96903 0.95685 0.97822 1.21816 1.00187 0.96449 1.01746 1.21572 0.99761 0.92341 0.99589 1.20807 0.92647 0.98062 0.96967 1.21834 0.99284 0.99628 0.98892 1.22050 1.02488 1.00815 0.95191 1.20327 0.88388 0.82599 0.78674 1.90728 1.68381 1.35889 1.43273 1.43514 1.12824 1.13994 1.60988 1.17458 0.82111 1.00189 0.94571 1.20097 0.94561 1.10200 1.02632 1.20490 0.94240 0.99546 0.97339 1.21364 1.00154 1.01747 0.94711 1.17504 0.89541 0.90057 0.91138 1.19488 1.18538 1.04681 1.06771 0.90622 1.25833 0.94931 0.94601 0.98801 1.69770 1.24934 1.12538 1.36533 0.86324 0.79096 0.80244 0.80724 1.18983 1.20458 1.19152 1.21081 0.96529 1.06887 0.97745 0.90369 0.94543 0.92846 0.91374 0.93199 0.93025 0.92611 0.90249 0.91766 0.92123 0.91667 0.91894 0.91188 0.91638 0.92499 0.77052 0.89359 0.89063 0.86432 0.91130 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 7.26 37.16 0.27 -1.92 16 2 C -0.10 -1.17 2.40 -90.62 -0.22 -1.38 16 3 C -0.14 -1.52 9.19 37.16 0.34 -1.18 16 4 C -0.09 -1.15 4.01 -26.74 -0.11 -1.25 16 5 C -0.08 -1.01 0.68 -155.66 -0.11 -1.11 16 6 C -0.14 -1.50 8.39 37.16 0.31 -1.19 16 7 C -0.15 -1.48 7.44 37.16 0.28 -1.21 16 8 C 0.51 8.80 4.17 -10.98 -0.05 8.75 16 9 O -0.51 -10.65 9.82 5.56 0.05 -10.60 16 10 N -0.67 -11.83 5.21 -9.91 -0.05 -11.88 16 11 C 0.15 3.35 6.26 -83.76 -0.52 2.82 16 12 C -0.25 -5.59 9.97 -39.10 -0.39 -5.98 16 13 C -0.10 -2.28 10.02 -39.69 -0.40 -2.68 16 14 C -0.16 -4.24 8.63 -38.84 -0.34 -4.57 16 15 C 0.12 3.33 5.51 -106.85 -0.59 2.74 16 16 C -0.46 -12.90 9.05 -37.74 -0.34 -13.25 16 17 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 18 C 0.07 1.92 5.30 -17.35 -0.09 1.83 16 19 N -0.81 -21.58 10.94 55.55 0.61 -20.98 16 20 Si 0.91 19.58 29.56 -169.99 -5.03 14.55 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 C -0.20 -5.20 8.39 -38.69 -0.32 -5.53 16 25 H 0.08 1.39 6.59 -51.93 -0.34 1.04 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.89 4.91 -51.93 -0.25 0.64 16 28 H 0.07 0.73 6.04 -51.93 -0.31 0.42 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.14 7.33 -51.93 -0.38 0.76 16 33 H 0.06 0.64 8.03 -51.93 -0.42 0.22 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.75 5.28 -51.93 -0.27 0.48 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.52 6.91 -51.93 -0.36 0.16 16 40 H 0.40 5.63 7.51 -40.82 -0.31 5.32 16 41 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 43 H 0.12 3.21 6.43 -52.49 -0.34 2.87 16 44 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 45 H 0.11 2.85 6.44 -52.49 -0.34 2.51 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -29.73 346.38 -8.56 -38.29 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -7.10 Total: 10.50 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -2.27 Total: -25.11 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.56 Total: -32.86 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.05 Total: -10.60 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.73 -8.56 -38.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456748014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.202 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds