Wall clock time and date at job start Tue Mar 31 2020 06:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46851 * 2 1 4 4 C 1.52994 * 109.47097 * 120.00420 * 2 1 3 5 5 C 1.52993 * 109.47460 * 63.60957 * 4 2 1 6 6 C 1.52998 * 109.47285 * 163.27023 * 5 4 2 7 7 C 1.53007 * 109.46890 * 43.27062 * 5 4 2 8 8 C 1.50705 * 109.47400 * 283.27163 * 5 4 2 9 9 O 1.21280 * 119.99585 * 349.89047 * 8 5 4 10 10 N 1.34772 * 119.99903 * 169.89301 * 8 5 4 11 11 C 1.39941 * 119.99575 * 175.45336 * 10 8 5 12 12 C 1.39293 * 119.94353 * 145.89177 * 11 10 8 13 13 C 1.38489 * 120.42759 * 179.97438 * 12 11 10 14 14 C 1.37687 * 120.32145 * 0.26695 * 13 12 11 15 15 C 1.40748 * 119.88135 * 359.46331 * 14 13 12 16 16 C 1.41407 * 120.21086 * 180.27641 * 15 14 13 17 17 H 1.07994 * 119.99948 * 213.56649 * 16 15 14 18 18 C 1.39936 * 119.99898 * 33.55388 * 16 15 14 19 19 N 1.30822 * 120.00100 * 6.19770 * 18 16 15 20 20 Si 1.86803 * 119.99954 * 186.19194 * 18 16 15 21 21 H 1.48500 * 109.46874 * 60.00365 * 20 18 16 22 22 H 1.48490 * 109.46995 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47072 * 300.00427 * 20 18 16 24 24 C 1.38234 * 119.94971 * 325.86590 * 11 10 8 25 25 H 1.09000 * 109.47099 * 293.59741 * 1 2 3 26 26 H 1.09004 * 109.47142 * 53.59990 * 1 2 3 27 27 H 1.08998 * 109.46862 * 173.59612 * 1 2 3 28 28 H 1.08999 * 109.47060 * 240.00316 * 2 1 3 29 29 H 1.08998 * 109.47130 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47727 * 300.00361 * 3 2 1 31 31 H 1.08999 * 109.47031 * 60.00298 * 3 2 1 32 32 H 1.09000 * 109.47338 * 303.61012 * 4 2 1 33 33 H 1.09004 * 109.47263 * 183.61181 * 4 2 1 34 34 H 1.09003 * 109.47325 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.47187 * 300.00334 * 6 5 4 36 36 H 1.08995 * 109.47114 * 60.00176 * 6 5 4 37 37 H 1.08997 * 109.47043 * 302.59196 * 7 5 4 38 38 H 1.09000 * 109.47106 * 62.60057 * 7 5 4 39 39 H 1.09002 * 109.47113 * 182.59410 * 7 5 4 40 40 H 0.96994 * 120.00304 * 355.45160 * 10 8 5 41 41 H 1.08001 * 119.79056 * 359.97438 * 12 11 10 42 42 H 1.08001 * 119.83933 * 179.97438 * 13 12 11 43 43 H 1.07991 * 120.05789 * 179.70231 * 14 13 12 44 44 H 0.96999 * 120.00286 * 179.97438 * 19 18 16 45 45 H 1.07999 * 120.16048 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6056 -2.1876 1.2045 6 6 2.4385 -2.9969 2.2006 7 6 1.8190 -2.7400 -0.2063 8 6 0.1469 -2.2907 1.5690 9 8 -0.4367 -1.3250 2.0137 10 7 -0.5089 -3.4560 1.4009 11 6 -1.8361 -3.5798 1.8271 12 6 -2.7243 -4.3797 1.1120 13 6 -4.0397 -4.5097 1.5252 14 6 -4.4855 -3.8446 2.6453 15 6 -3.5979 -3.0374 3.3811 16 6 -4.0468 -2.3559 4.5360 17 1 -3.6349 -1.3896 4.7870 18 6 -5.0248 -2.9334 5.3533 19 7 -5.4363 -4.1529 5.1192 20 14 -5.7428 -1.9629 6.7789 21 1 -6.3893 -0.7298 6.2624 22 1 -6.7518 -2.7931 7.4844 23 1 -4.6576 -1.5946 7.7233 24 6 -2.2633 -2.9085 2.9575 25 1 -0.3633 0.4114 0.9417 26 1 -0.3633 0.6099 -0.8272 27 1 -0.3633 -1.0213 -0.1146 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6248 -0.2463 2.1380 33 1 3.1281 -0.6656 1.2821 34 1 2.1293 -4.0416 2.1684 35 1 3.4936 -2.9223 1.9370 36 1 2.2865 -2.6033 3.2055 37 1 1.2619 -2.1350 -0.9215 38 1 2.8804 -2.7081 -0.4522 39 1 1.4668 -3.7706 -0.2501 40 1 -0.0611 -4.2089 0.9844 41 1 -2.3851 -4.9019 0.2296 42 1 -4.7204 -5.1321 0.9633 43 1 -5.5133 -3.9453 2.9609 44 1 -6.1140 -4.5534 5.6860 45 1 -1.5751 -2.2887 3.5131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456748014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:45 Heat of formation + Delta-G solvation = -51.336559 kcal Electronic energy + Delta-G solvation = -23755.024567 eV Core-core repulsion = 20542.787059 eV Total energy + Delta-G solvation = -3212.237508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.86464 -39.45963 -37.64335 -36.17901 -35.16580 -34.24635 -31.73694 -29.94235 -28.58252 -27.65350 -27.46058 -27.23093 -24.69123 -22.89315 -22.36434 -21.14593 -19.83695 -19.41869 -17.85009 -17.36362 -17.03529 -16.55898 -16.37959 -16.18375 -15.41983 -15.00515 -14.96054 -14.61877 -14.38794 -13.94800 -13.78166 -13.57775 -13.46987 -13.37616 -13.05146 -12.99144 -12.88266 -12.82654 -12.77398 -12.49345 -12.38020 -12.19990 -12.00873 -11.88950 -11.59616 -11.47206 -11.33247 -11.17029 -11.06358 -10.78539 -10.30828 -9.32884 -8.71831 -8.52501 -6.40819 0.89101 0.99934 1.34571 1.46576 1.47186 1.90274 2.21082 2.30719 2.78288 3.58601 3.69241 3.79714 3.87649 4.11937 4.16566 4.29111 4.43916 4.47157 4.60030 4.71617 4.74345 4.79717 4.86060 4.90504 4.95907 4.98736 5.04170 5.07082 5.08413 5.11569 5.14369 5.21071 5.21560 5.29711 5.33269 5.38020 5.41208 5.46355 5.64818 5.81066 5.85911 6.05677 6.12412 6.36889 6.68708 6.71988 6.94814 7.00797 7.43615 8.40209 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019450 B = 0.004320 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.208006 B = 6480.009094 C = 7076.354700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.143 4.143 4 C -0.095 4.095 5 C -0.072 4.072 6 C -0.138 4.138 7 C -0.146 4.146 8 C 0.507 3.493 9 O -0.552 6.552 10 N -0.661 5.661 11 C 0.157 3.843 12 C -0.243 4.243 13 C -0.095 4.095 14 C -0.186 4.186 15 C 0.089 3.911 16 C -0.508 4.508 17 H 0.060 0.940 18 C 0.035 3.965 19 N -0.837 5.837 20 Si 0.982 3.018 21 H -0.262 1.262 22 H -0.261 1.261 23 H -0.265 1.265 24 C -0.226 4.226 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.033 0.967 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.041 0.959 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.416 0.584 41 H 0.132 0.868 42 H 0.123 0.877 43 H 0.101 0.899 44 H 0.286 0.714 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.912 1.170 -10.043 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.200 4.200 4 C -0.132 4.132 5 C -0.075 4.075 6 C -0.195 4.195 7 C -0.203 4.203 8 C 0.296 3.704 9 O -0.429 6.429 10 N -0.308 5.308 11 C 0.064 3.936 12 C -0.264 4.264 13 C -0.114 4.114 14 C -0.206 4.206 15 C 0.087 3.913 16 C -0.539 4.539 17 H 0.078 0.922 18 C -0.178 4.178 19 N -0.464 5.464 20 Si 0.803 3.197 21 H -0.187 1.187 22 H -0.185 1.185 23 H -0.190 1.190 24 C -0.248 4.248 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.254 0.746 41 H 0.149 0.851 42 H 0.141 0.859 43 H 0.119 0.881 44 H 0.097 0.903 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 15.404 1.682 -9.638 18.248 hybrid contribution -0.795 0.079 0.900 1.203 sum 14.609 1.761 -8.738 17.114 Atomic orbital electron populations 1.22090 0.97074 1.00158 1.00293 1.21236 0.94133 0.97021 0.98732 1.21800 1.01631 0.95272 1.01302 1.21600 1.01511 0.91887 0.98231 1.20857 0.88576 0.98877 0.99216 1.21879 1.01018 0.99373 0.97269 1.22085 1.04618 1.01035 0.92606 1.21427 0.90365 0.81482 0.77136 1.90740 1.69839 1.37429 1.44902 1.43476 1.11115 1.15256 1.60913 1.17540 0.84506 0.98458 0.93100 1.20535 0.93672 1.09044 1.03170 1.20859 0.95586 0.98726 0.96237 1.21295 0.99383 1.03495 0.96437 1.17829 0.90622 0.91085 0.91798 1.19652 1.20910 1.04883 1.08456 0.92210 1.26632 0.94542 0.95480 1.01108 1.69821 1.25300 1.13612 1.37700 0.85261 0.78463 0.78828 0.77130 1.18695 1.18488 1.18957 1.21015 0.95922 1.08232 0.99589 0.94132 0.93861 0.94761 0.88872 0.90816 0.92388 0.94244 0.93614 0.88400 0.91533 0.88159 0.93998 0.91901 0.88387 0.91391 0.74637 0.85056 0.85910 0.88125 0.90325 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 7.26 71.98 0.52 -3.76 16 2 C -0.09 -2.05 2.40 -10.79 -0.03 -2.08 16 3 C -0.14 -2.74 9.19 71.98 0.66 -2.08 16 4 C -0.09 -2.13 4.01 30.59 0.12 -2.01 16 5 C -0.07 -1.63 0.68 -52.93 -0.04 -1.67 16 6 C -0.14 -2.62 8.39 71.98 0.60 -2.02 16 7 C -0.15 -2.32 7.44 71.98 0.54 -1.79 16 8 C 0.51 17.44 4.17 87.66 0.37 17.81 16 9 O -0.55 -24.56 9.82 -3.03 -0.03 -24.59 16 10 N -0.66 -22.82 5.21 -303.66 -1.58 -24.40 16 11 C 0.16 7.13 6.26 38.10 0.24 7.37 16 12 C -0.24 -10.30 9.97 22.58 0.23 -10.08 16 13 C -0.10 -4.42 10.02 22.20 0.22 -4.20 16 14 C -0.19 -10.23 8.63 22.75 0.20 -10.03 16 15 C 0.09 5.24 5.51 -21.31 -0.12 5.12 16 16 C -0.51 -30.24 9.05 23.46 0.21 -30.03 16 17 H 0.06 3.58 7.85 -2.91 -0.02 3.55 16 18 C 0.04 1.90 5.30 85.25 0.45 2.36 16 19 N -0.84 -46.09 10.94 21.82 0.24 -45.85 16 20 Si 0.98 41.47 29.56 68.60 2.03 43.50 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 C -0.23 -12.36 8.39 22.85 0.19 -12.17 16 25 H 0.04 1.54 6.59 -2.39 -0.02 1.52 16 26 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.03 1.15 4.91 -2.39 -0.01 1.14 16 28 H 0.09 1.64 6.04 -2.39 -0.01 1.63 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 1.35 7.33 -2.39 -0.02 1.33 16 33 H 0.10 1.57 8.03 -2.38 -0.02 1.55 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 1.12 5.28 -2.39 -0.01 1.11 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 39 H 0.07 0.94 6.91 -2.39 -0.02 0.93 16 40 H 0.42 10.73 7.51 -92.71 -0.70 10.04 16 41 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 42 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 43 H 0.10 5.77 6.43 -2.92 -0.02 5.75 16 44 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 45 H 0.08 4.88 6.44 -2.91 -0.02 4.86 16 Total: -1.00 -71.25 346.38 5.31 -65.94 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 0.29 Total: 34.66 kcal Atomic # 6 Polarization: -53.63 SS G_CDS: 4.37 Total: -49.26 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -1.34 Total: -70.25 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.03 Total: -24.59 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -71.25 5.31 -65.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456748014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.601 kcal (2) G-P(sol) polarization free energy of solvation -71.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds