Wall clock time and date at job start Tue Mar 31 2020 06:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46765 * 2 1 4 4 C 1.53004 * 109.46765 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46947 * 60.00455 * 4 3 2 6 6 C 1.52997 * 109.47103 * 300.00320 * 4 3 2 7 7 C 1.52996 * 109.46972 * 299.99795 * 6 4 3 8 8 C 1.50704 * 109.46635 * 180.02562 * 4 3 2 9 9 O 1.21286 * 120.00008 * 0.02562 * 8 4 3 10 10 N 1.34777 * 119.99707 * 180.02562 * 8 4 3 11 11 C 1.39934 * 119.99991 * 174.89368 * 10 8 4 12 12 C 1.39291 * 119.94781 * 325.54947 * 11 10 8 13 13 C 1.38484 * 120.43147 * 179.76536 * 12 11 10 14 14 C 1.37687 * 120.31915 * 0.51011 * 13 12 11 15 15 C 1.40740 * 119.88522 * 359.74409 * 14 13 12 16 16 C 1.41403 * 120.21196 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00105 * 25.12899 * 16 15 14 18 18 C 1.39934 * 120.00010 * 205.12897 * 16 15 14 19 19 N 1.30825 * 120.00104 * 16.79918 * 18 16 15 20 20 Si 1.86801 * 119.99884 * 196.79659 * 18 16 15 21 21 H 1.48503 * 109.47181 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47340 * 119.99999 * 20 18 16 23 23 H 1.48499 * 109.47168 * 240.00024 * 20 18 16 24 24 C 1.38238 * 119.94839 * 145.82071 * 11 10 8 25 25 H 1.08996 * 109.47556 * 60.00060 * 1 2 3 26 26 H 1.09003 * 109.46801 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47358 * 299.99047 * 1 2 3 28 28 H 1.09005 * 109.46886 * 240.00797 * 2 1 3 29 29 H 1.08992 * 109.47205 * 120.00318 * 2 1 3 30 30 H 1.09001 * 109.46404 * 60.00369 * 3 2 1 31 31 H 1.08996 * 109.47035 * 300.00259 * 3 2 1 32 32 H 1.09005 * 109.47315 * 59.99547 * 5 4 3 33 33 H 1.08993 * 109.47096 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.47395 * 299.99666 * 5 4 3 35 35 H 1.08995 * 109.47472 * 60.00517 * 6 4 3 36 36 H 1.09001 * 109.46697 * 180.02562 * 6 4 3 37 37 H 1.09000 * 109.47585 * 60.00593 * 7 6 4 38 38 H 1.09005 * 109.46958 * 180.02562 * 7 6 4 39 39 H 1.09003 * 109.47660 * 300.00281 * 7 6 4 40 40 H 0.97000 * 119.99784 * 354.89251 * 10 8 4 41 41 H 1.08003 * 119.78655 * 0.02562 * 12 11 10 42 42 H 1.07996 * 119.84467 * 180.23953 * 13 12 11 43 43 H 1.08003 * 120.05612 * 179.77334 * 14 13 12 44 44 H 0.97004 * 120.00093 * 180.02562 * 19 18 16 45 45 H 1.08000 * 120.16128 * 359.95958 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0794 0.7216 -1.2503 6 6 4.0805 0.7211 1.2482 7 6 3.5711 1.4421 2.4978 8 6 4.0722 2.8635 0.0000 9 8 3.2840 3.7853 0.0013 10 7 5.3973 3.1098 -0.0009 11 6 5.8645 4.4245 -0.1082 12 6 5.1691 5.3483 -0.8849 13 6 5.6198 6.6532 -0.9941 14 6 6.7671 7.0491 -0.3439 15 6 7.4831 6.1253 0.4401 16 6 8.6619 6.5245 1.1113 17 1 8.8092 7.5619 1.3733 18 6 9.6377 5.5755 1.4360 19 7 9.6329 4.4056 0.8505 20 14 10.9472 5.9792 2.7056 21 1 10.7331 7.3570 3.2166 22 1 10.8590 5.0150 3.8315 23 1 12.2900 5.8864 2.0784 24 6 7.0184 4.8028 0.5522 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.7156 1.2356 -2.1400 33 1 5.1694 0.7220 -1.2510 34 1 3.7161 -0.3061 -1.2503 35 1 3.7173 -0.3066 1.2482 36 1 5.1705 0.7215 1.2479 37 1 2.4811 1.4421 2.4983 38 1 3.9352 0.9283 3.3875 39 1 3.9344 2.4698 2.4978 40 1 6.0271 2.3757 0.0728 41 1 4.2703 5.0461 -1.4019 42 1 5.0712 7.3627 -1.5958 43 1 7.1168 8.0669 -0.4351 44 1 10.3091 3.7477 1.0759 45 1 7.5604 4.0863 1.1517 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456750223.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:48 Heat of formation + Delta-G solvation = -47.921269 kcal Electronic energy + Delta-G solvation = -23479.891447 eV Core-core repulsion = 20267.802037 eV Total energy + Delta-G solvation = -3212.089410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.33976 -37.78332 -36.43686 -34.27342 -33.41765 -32.78341 -30.49822 -29.52204 -28.31862 -26.61026 -25.24349 -24.16234 -23.10345 -21.56270 -21.11126 -19.89559 -18.50206 -17.40442 -16.59997 -15.77465 -15.54707 -15.15826 -14.96990 -14.64563 -14.34375 -13.84384 -13.59019 -13.28231 -13.06948 -12.93562 -12.66136 -12.41767 -12.24308 -12.13098 -11.84045 -11.74545 -11.61633 -11.25624 -11.22850 -11.11436 -10.90277 -10.87533 -10.69526 -10.58617 -10.43588 -10.32777 -9.97070 -9.70561 -9.34571 -9.13498 -8.81579 -7.36197 -6.98459 -6.67551 -4.35875 2.62507 2.85577 3.07420 3.13101 3.21432 3.41115 3.72350 3.93993 4.60072 4.64907 4.74532 4.82579 5.02594 5.05381 5.19859 5.30459 5.40009 5.56458 5.58430 5.63216 5.70115 5.72473 5.77744 5.85299 5.93376 5.97758 6.03589 6.09388 6.16245 6.26867 6.30894 6.31626 6.49838 6.66039 6.73569 6.94114 7.07187 7.10536 7.27479 7.65343 7.73259 7.95355 8.04964 8.20005 8.36606 8.59760 8.82275 8.90473 8.98840 10.19844 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022364 B = 0.004037 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.686218 B = 6934.128403 C = 7646.339091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.096 4.096 4 C -0.079 4.079 5 C -0.143 4.143 6 C -0.113 4.113 7 C -0.158 4.158 8 C 0.518 3.482 9 O -0.527 6.527 10 N -0.664 5.664 11 C 0.147 3.853 12 C -0.226 4.226 13 C -0.086 4.086 14 C -0.229 4.229 15 C 0.120 3.880 16 C -0.463 4.463 17 H 0.078 0.922 18 C 0.077 3.923 19 N -0.799 5.799 20 Si 0.906 3.094 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.275 1.275 24 C -0.182 4.182 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.400 0.600 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.278 0.722 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.063 -11.792 -0.070 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.134 4.134 4 C -0.082 4.082 5 C -0.200 4.200 6 C -0.150 4.150 7 C -0.216 4.216 8 C 0.305 3.695 9 O -0.403 6.403 10 N -0.307 5.307 11 C 0.055 3.945 12 C -0.247 4.247 13 C -0.105 4.105 14 C -0.249 4.249 15 C 0.117 3.883 16 C -0.493 4.493 17 H 0.096 0.904 18 C -0.140 4.140 19 N -0.426 5.426 20 Si 0.731 3.269 21 H -0.184 1.184 22 H -0.198 1.198 23 H -0.201 1.201 24 C -0.204 4.204 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.235 0.765 41 H 0.118 0.882 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.512 -11.372 -0.099 14.826 hybrid contribution 1.088 -0.232 0.545 1.239 sum -8.424 -11.604 0.446 14.347 Atomic orbital electron populations 1.21762 0.96020 1.01202 1.01923 1.21676 0.95690 0.97011 1.02093 1.21461 0.91977 0.96400 1.03515 1.20876 0.97475 0.92727 0.97159 1.21907 1.01395 1.00450 0.96267 1.21629 1.00785 0.99430 0.93187 1.21871 1.01542 1.01124 0.97026 1.20439 0.82376 0.90732 0.75987 1.90684 1.55187 1.45985 1.48397 1.43518 1.06843 1.08268 1.72063 1.17620 0.95734 0.82914 0.98245 1.20287 1.03031 0.94132 1.07292 1.20415 0.96162 0.94792 0.99166 1.21035 0.99468 0.99463 1.04933 1.17366 0.91467 0.90654 0.88800 1.19562 1.01174 0.95514 1.33061 0.90382 1.25866 0.98599 0.94410 0.95122 1.69825 1.32137 1.05991 1.34604 0.86298 0.79915 0.79948 0.80764 1.18440 1.19814 1.20066 1.21069 0.96727 0.98512 1.04061 0.92787 0.93023 0.92783 0.91796 0.91726 0.90892 0.91396 0.92056 0.92039 0.91305 0.90721 0.91542 0.92178 0.92593 0.92287 0.76538 0.88221 0.89116 0.88915 0.91156 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.13 -1.18 5.23 -26.73 -0.14 -1.32 16 3 C -0.10 -1.17 3.21 -26.73 -0.09 -1.26 16 4 C -0.08 -1.02 0.43 -155.66 -0.07 -1.09 16 5 C -0.14 -1.58 8.02 37.16 0.30 -1.28 16 6 C -0.11 -1.27 4.54 -26.73 -0.12 -1.39 16 7 C -0.16 -1.97 9.31 37.16 0.35 -1.62 16 8 C 0.52 9.32 4.94 -10.98 -0.05 9.27 16 9 O -0.53 -11.47 13.73 5.55 0.08 -11.39 16 10 N -0.66 -12.72 5.11 -9.91 -0.05 -12.77 16 11 C 0.15 3.48 6.25 -83.77 -0.52 2.96 16 12 C -0.23 -5.49 8.66 -39.10 -0.34 -5.83 16 13 C -0.09 -2.07 10.02 -39.69 -0.40 -2.46 16 14 C -0.23 -5.79 9.79 -38.84 -0.38 -6.17 16 15 C 0.12 3.23 5.57 -106.85 -0.59 2.63 16 16 C -0.46 -12.29 9.05 -37.74 -0.34 -12.63 16 17 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 18 C 0.08 1.90 5.16 -17.35 -0.09 1.82 16 19 N -0.80 -20.11 10.94 55.55 0.61 -19.51 16 20 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 24 C -0.18 -4.68 8.60 -38.68 -0.33 -5.01 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.55 6.43 -51.93 -0.33 0.21 16 29 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 30 H 0.07 0.98 6.39 -51.93 -0.33 0.65 16 31 H 0.07 0.92 8.10 -51.93 -0.42 0.49 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.67 7.69 -51.93 -0.40 0.27 16 34 H 0.07 0.60 6.43 -51.93 -0.33 0.27 16 35 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 36 H 0.07 0.74 7.46 -51.93 -0.39 0.36 16 37 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.92 7.22 -51.93 -0.37 0.54 16 40 H 0.40 6.67 7.68 -40.82 -0.31 6.36 16 41 H 0.10 2.40 6.48 -52.48 -0.34 2.06 16 42 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 43 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 44 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 45 H 0.12 3.16 6.17 -52.49 -0.32 2.83 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -29.35 351.71 -8.62 -37.97 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -7.07 Total: 11.21 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -2.45 Total: -24.34 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.56 Total: -32.28 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.35 -8.62 -37.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456750223.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.949 kcal (2) G-P(sol) polarization free energy of solvation -29.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds