Wall clock time and date at job start Tue Mar 31 2020 06:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46765 * 2 1 4 4 C 1.53004 * 109.46765 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46947 * 60.00455 * 4 3 2 6 6 C 1.52997 * 109.47103 * 300.00320 * 4 3 2 7 7 C 1.52996 * 109.46972 * 299.99795 * 6 4 3 8 8 C 1.50704 * 109.46635 * 180.02562 * 4 3 2 9 9 O 1.21286 * 120.00008 * 0.02562 * 8 4 3 10 10 N 1.34777 * 119.99707 * 180.02562 * 8 4 3 11 11 C 1.39934 * 119.99991 * 174.89368 * 10 8 4 12 12 C 1.39291 * 119.94781 * 325.54947 * 11 10 8 13 13 C 1.38484 * 120.43147 * 179.76536 * 12 11 10 14 14 C 1.37687 * 120.31915 * 0.51011 * 13 12 11 15 15 C 1.40740 * 119.88522 * 359.74409 * 14 13 12 16 16 C 1.41403 * 120.21196 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00105 * 25.12899 * 16 15 14 18 18 C 1.39934 * 120.00010 * 205.12897 * 16 15 14 19 19 N 1.30825 * 120.00104 * 16.79918 * 18 16 15 20 20 Si 1.86801 * 119.99884 * 196.79659 * 18 16 15 21 21 H 1.48503 * 109.47181 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47340 * 119.99999 * 20 18 16 23 23 H 1.48499 * 109.47168 * 240.00024 * 20 18 16 24 24 C 1.38238 * 119.94839 * 145.82071 * 11 10 8 25 25 H 1.08996 * 109.47556 * 60.00060 * 1 2 3 26 26 H 1.09003 * 109.46801 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47358 * 299.99047 * 1 2 3 28 28 H 1.09005 * 109.46886 * 240.00797 * 2 1 3 29 29 H 1.08992 * 109.47205 * 120.00318 * 2 1 3 30 30 H 1.09001 * 109.46404 * 60.00369 * 3 2 1 31 31 H 1.08996 * 109.47035 * 300.00259 * 3 2 1 32 32 H 1.09005 * 109.47315 * 59.99547 * 5 4 3 33 33 H 1.08993 * 109.47096 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.47395 * 299.99666 * 5 4 3 35 35 H 1.08995 * 109.47472 * 60.00517 * 6 4 3 36 36 H 1.09001 * 109.46697 * 180.02562 * 6 4 3 37 37 H 1.09000 * 109.47585 * 60.00593 * 7 6 4 38 38 H 1.09005 * 109.46958 * 180.02562 * 7 6 4 39 39 H 1.09003 * 109.47660 * 300.00281 * 7 6 4 40 40 H 0.97000 * 119.99784 * 354.89251 * 10 8 4 41 41 H 1.08003 * 119.78655 * 0.02562 * 12 11 10 42 42 H 1.07996 * 119.84467 * 180.23953 * 13 12 11 43 43 H 1.08003 * 120.05612 * 179.77334 * 14 13 12 44 44 H 0.97004 * 120.00093 * 180.02562 * 19 18 16 45 45 H 1.08000 * 120.16128 * 359.95958 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0794 0.7216 -1.2503 6 6 4.0805 0.7211 1.2482 7 6 3.5711 1.4421 2.4978 8 6 4.0722 2.8635 0.0000 9 8 3.2840 3.7853 0.0013 10 7 5.3973 3.1098 -0.0009 11 6 5.8645 4.4245 -0.1082 12 6 5.1691 5.3483 -0.8849 13 6 5.6198 6.6532 -0.9941 14 6 6.7671 7.0491 -0.3439 15 6 7.4831 6.1253 0.4401 16 6 8.6619 6.5245 1.1113 17 1 8.8092 7.5619 1.3733 18 6 9.6377 5.5755 1.4360 19 7 9.6329 4.4056 0.8505 20 14 10.9472 5.9792 2.7056 21 1 10.7331 7.3570 3.2166 22 1 10.8590 5.0150 3.8315 23 1 12.2900 5.8864 2.0784 24 6 7.0184 4.8028 0.5522 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.7156 1.2356 -2.1400 33 1 5.1694 0.7220 -1.2510 34 1 3.7161 -0.3061 -1.2503 35 1 3.7173 -0.3066 1.2482 36 1 5.1705 0.7215 1.2479 37 1 2.4811 1.4421 2.4983 38 1 3.9352 0.9283 3.3875 39 1 3.9344 2.4698 2.4978 40 1 6.0271 2.3757 0.0728 41 1 4.2703 5.0461 -1.4019 42 1 5.0712 7.3627 -1.5958 43 1 7.1168 8.0669 -0.4351 44 1 10.3091 3.7477 1.0759 45 1 7.5604 4.0863 1.1517 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456750223.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:47 Heat of formation + Delta-G solvation = -62.960335 kcal Electronic energy + Delta-G solvation = -23480.543590 eV Core-core repulsion = 20267.802037 eV Total energy + Delta-G solvation = -3212.741553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.75009 -39.43181 -37.83032 -36.01206 -35.13864 -33.77686 -31.54664 -31.42132 -30.07329 -27.50649 -27.19638 -25.30853 -24.13604 -23.14262 -22.74500 -21.46708 -19.81570 -19.24060 -18.02896 -17.33911 -16.86282 -16.64276 -16.44889 -16.11921 -15.79065 -15.06586 -14.92934 -14.62124 -14.46577 -14.19313 -14.05830 -13.88915 -13.48252 -13.34840 -13.05315 -13.00459 -12.82241 -12.74889 -12.62997 -12.59096 -12.33018 -12.12784 -11.83183 -11.78623 -11.73655 -11.58574 -11.40073 -11.21027 -11.13415 -10.89509 -10.44117 -9.34516 -8.85759 -8.54982 -6.36359 0.82301 1.02778 1.39918 1.48920 1.54415 1.81752 2.22156 2.26999 2.74884 3.58039 3.64039 3.71063 3.85136 4.08312 4.23615 4.32654 4.37842 4.44674 4.53805 4.66888 4.68713 4.70306 4.79334 4.84064 4.87899 4.91203 4.99969 5.09950 5.11338 5.13143 5.15390 5.17996 5.21232 5.23021 5.28151 5.35367 5.41107 5.46827 5.59005 5.79364 5.85996 6.01732 6.07707 6.33145 6.57921 6.75660 6.93097 6.97444 7.31978 8.33972 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022364 B = 0.004037 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.686218 B = 6934.128403 C = 7646.339091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.069 4.069 5 C -0.141 4.141 6 C -0.110 4.110 7 C -0.158 4.158 8 C 0.515 3.485 9 O -0.568 6.568 10 N -0.660 5.660 11 C 0.152 3.848 12 C -0.242 4.242 13 C -0.085 4.085 14 C -0.251 4.251 15 C 0.093 3.907 16 C -0.498 4.498 17 H 0.075 0.925 18 C 0.038 3.962 19 N -0.820 5.820 20 Si 0.981 3.019 21 H -0.262 1.262 22 H -0.263 1.263 23 H -0.264 1.264 24 C -0.203 4.203 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.018 0.982 40 H 0.412 0.588 41 H 0.099 0.901 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.289 0.711 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.833 -14.278 0.400 16.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.131 4.131 4 C -0.072 4.072 5 C -0.199 4.199 6 C -0.147 4.147 7 C -0.215 4.215 8 C 0.304 3.696 9 O -0.447 6.447 10 N -0.304 5.304 11 C 0.059 3.941 12 C -0.263 4.263 13 C -0.103 4.103 14 C -0.271 4.271 15 C 0.090 3.910 16 C -0.527 4.527 17 H 0.093 0.907 18 C -0.177 4.177 19 N -0.446 5.446 20 Si 0.802 3.198 21 H -0.186 1.186 22 H -0.188 1.188 23 H -0.189 1.189 24 C -0.224 4.224 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.037 0.963 40 H 0.249 0.751 41 H 0.117 0.883 42 H 0.136 0.864 43 H 0.119 0.881 44 H 0.100 0.900 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.292 -13.893 0.356 16.718 hybrid contribution 0.953 0.539 0.366 1.154 sum -8.339 -13.355 0.722 15.761 Atomic orbital electron populations 1.21773 0.95637 1.02180 1.01446 1.21653 0.96021 0.94566 1.03456 1.21443 0.91369 0.98487 1.01787 1.20923 0.97839 0.89175 0.99291 1.21951 1.01606 1.01844 0.94462 1.21695 1.01013 1.00730 0.91278 1.21868 1.01893 0.99053 0.98679 1.21505 0.81270 0.92784 0.74000 1.90656 1.55988 1.48007 1.50022 1.43532 1.07874 1.06953 1.72068 1.17706 0.94819 0.84801 0.96781 1.20443 1.03248 0.94696 1.07917 1.20718 0.95712 0.95248 0.98649 1.21207 1.00286 0.99856 1.05720 1.17774 0.92219 0.91618 0.89391 1.19802 1.02147 0.96053 1.34724 0.90704 1.26695 1.00459 0.94000 0.96518 1.69851 1.33025 1.06704 1.35009 0.85174 0.77045 0.79627 0.77944 1.18576 1.18781 1.18915 1.21014 0.97803 0.98297 1.05336 0.93352 0.91259 0.93324 0.90311 0.90269 0.92681 0.93257 0.93097 0.91791 0.87915 0.87107 0.91277 0.91674 0.90812 0.96314 0.75108 0.88258 0.86420 0.88104 0.90033 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 71.98 0.71 -1.57 16 2 C -0.12 -1.85 5.23 30.60 0.16 -1.69 16 3 C -0.09 -2.18 3.21 30.60 0.10 -2.08 16 4 C -0.07 -1.69 0.43 -52.93 -0.02 -1.71 16 5 C -0.14 -2.78 8.02 71.98 0.58 -2.20 16 6 C -0.11 -2.20 4.54 30.59 0.14 -2.07 16 7 C -0.16 -3.75 9.31 71.98 0.67 -3.08 16 8 C 0.51 18.75 4.94 87.66 0.43 19.18 16 9 O -0.57 -25.57 13.73 -3.05 -0.04 -25.61 16 10 N -0.66 -25.70 5.11 -303.65 -1.55 -27.25 16 11 C 0.15 7.43 6.25 38.10 0.24 7.67 16 12 C -0.24 -12.03 8.66 22.58 0.20 -11.83 16 13 C -0.08 -4.11 10.02 22.20 0.22 -3.89 16 14 C -0.25 -13.04 9.79 22.75 0.22 -12.82 16 15 C 0.09 5.16 5.57 -21.31 -0.12 5.04 16 16 C -0.50 -27.11 9.05 23.46 0.21 -26.90 16 17 H 0.07 3.97 7.90 -2.91 -0.02 3.95 16 18 C 0.04 1.92 5.16 85.25 0.44 2.36 16 19 N -0.82 -41.42 10.94 21.82 0.24 -41.18 16 20 Si 0.98 37.77 29.59 68.60 2.03 39.80 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 23 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 24 C -0.20 -10.77 8.60 22.85 0.20 -10.58 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 1.02 6.43 -2.38 -0.02 1.00 16 29 H 0.08 1.02 6.43 -2.39 -0.02 1.01 16 30 H 0.05 1.48 6.39 -2.39 -0.02 1.46 16 31 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 32 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.06 1.24 7.69 -2.39 -0.02 1.22 16 34 H 0.10 1.36 6.43 -2.39 -0.02 1.34 16 35 H 0.11 1.51 6.43 -2.39 -0.02 1.49 16 36 H 0.07 1.38 7.46 -2.39 -0.02 1.36 16 37 H 0.06 1.46 6.43 -2.39 -0.02 1.44 16 38 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.02 0.57 7.22 -2.39 -0.02 0.56 16 40 H 0.41 13.74 7.68 -92.71 -0.71 13.03 16 41 H 0.10 4.90 6.48 -2.91 -0.02 4.88 16 42 H 0.12 4.94 8.06 -2.91 -0.02 4.91 16 43 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 44 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 45 H 0.11 6.09 6.17 -2.91 -0.02 6.08 16 Total: -1.00 -66.04 351.71 5.32 -60.72 By element: Atomic # 1 Polarization: 39.44 SS G_CDS: 0.27 Total: 39.71 kcal Atomic # 6 Polarization: -50.56 SS G_CDS: 4.38 Total: -46.18 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -1.31 Total: -68.43 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.04 Total: -25.61 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -66.04 5.32 -60.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456750223.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.241 kcal (2) G-P(sol) polarization free energy of solvation -66.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds