Wall clock time and date at job start Tue Mar 31 2020 06:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47348 * 2 1 4 4 C 1.52999 * 109.47348 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47007 * 300.00314 * 4 3 2 6 6 C 1.53000 * 109.47067 * 60.00121 * 4 3 2 7 7 C 1.52995 * 109.47126 * 59.99983 * 6 4 3 8 8 C 1.50701 * 109.47364 * 180.02562 * 4 3 2 9 9 O 1.21280 * 120.00111 * 359.97438 * 8 4 3 10 10 N 1.34779 * 119.99777 * 180.02562 * 8 4 3 11 11 C 1.39933 * 119.99745 * 174.87609 * 10 8 4 12 12 C 1.39289 * 119.95025 * 146.37958 * 11 10 8 13 13 C 1.38486 * 120.42975 * 179.97438 * 12 11 10 14 14 C 1.37681 * 120.32074 * 0.02562 * 13 12 11 15 15 C 1.40740 * 119.88889 * 359.97438 * 14 13 12 16 16 C 1.41410 * 120.21010 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99421 * 151.74416 * 16 15 14 18 18 C 1.39926 * 120.00385 * 331.74706 * 16 15 14 19 19 N 1.30828 * 119.99815 * 349.00469 * 18 16 15 20 20 Si 1.86797 * 120.00029 * 169.00490 * 18 16 15 21 21 H 1.48501 * 109.47171 * 94.99009 * 20 18 16 22 22 H 1.48499 * 109.46973 * 214.98928 * 20 18 16 23 23 H 1.48497 * 109.47136 * 334.99104 * 20 18 16 24 24 C 1.38240 * 119.94638 * 326.10190 * 11 10 8 25 25 H 1.08996 * 109.47730 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47186 * 300.00142 * 1 2 3 27 27 H 1.09000 * 109.47059 * 59.99562 * 1 2 3 28 28 H 1.08998 * 109.46722 * 239.99954 * 2 1 3 29 29 H 1.09000 * 109.47059 * 120.00438 * 2 1 3 30 30 H 1.09008 * 109.47299 * 60.00311 * 3 2 1 31 31 H 1.09000 * 109.47398 * 300.00230 * 3 2 1 32 32 H 1.09000 * 109.46957 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47507 * 299.99748 * 5 4 3 34 34 H 1.09000 * 109.46946 * 59.99689 * 5 4 3 35 35 H 1.09009 * 109.46948 * 300.00245 * 6 4 3 36 36 H 1.08998 * 109.47228 * 180.02562 * 6 4 3 37 37 H 1.08998 * 109.47569 * 300.00406 * 7 6 4 38 38 H 1.08999 * 109.47584 * 180.02562 * 7 6 4 39 39 H 1.09005 * 109.47351 * 59.99927 * 7 6 4 40 40 H 0.97001 * 120.00355 * 354.86543 * 10 8 4 41 41 H 1.08002 * 119.78260 * 0.02562 * 12 11 10 42 42 H 1.08006 * 119.83807 * 180.02562 * 13 12 11 43 43 H 1.08011 * 120.05437 * 179.97438 * 14 13 12 44 44 H 0.97005 * 120.00053 * 180.02562 * 19 18 16 45 45 H 1.08005 * 120.16404 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0805 0.7209 1.2483 6 6 4.0795 0.7214 -1.2502 7 6 3.5690 1.4428 -2.4991 8 6 4.0724 2.8632 0.0000 9 8 3.2844 3.7851 0.0004 10 7 5.3975 3.1094 -0.0009 11 6 5.8648 4.4240 -0.1086 12 6 7.0339 4.8024 0.5474 13 6 7.5056 6.1006 0.4472 14 6 6.8230 7.0322 -0.3022 15 6 5.6403 6.6645 -0.9706 16 6 4.9335 7.6161 -1.7417 17 1 4.3390 7.2943 -2.5840 18 6 5.0044 8.9745 -1.4136 19 7 5.5406 9.3464 -0.2796 20 14 4.3336 10.2569 -2.5946 21 1 2.9404 10.6009 -2.2126 22 1 5.1790 11.4762 -2.5337 23 1 4.3480 9.7130 -3.9763 24 6 5.1685 5.3437 -0.8705 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 5.1705 0.7205 1.2476 33 1 3.7176 1.2345 2.1385 34 1 3.7171 -0.3067 1.2482 35 1 3.7161 -0.3063 -1.2502 36 1 5.1695 0.7210 -1.2505 37 1 2.4790 1.4429 -2.4986 38 1 3.9315 0.9289 -3.3893 39 1 3.9323 2.4705 -2.4991 40 1 6.0273 2.3754 0.0732 41 1 7.5764 4.0784 1.1372 42 1 8.4134 6.3835 0.9595 43 1 7.1946 8.0437 -0.3770 44 1 5.5894 10.2881 -0.0520 45 1 4.2646 5.0500 -1.3835 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456750224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:51 Heat of formation + Delta-G solvation = -45.830239 kcal Electronic energy + Delta-G solvation = -23468.135806 eV Core-core repulsion = 20256.137070 eV Total energy + Delta-G solvation = -3211.998736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.35842 -37.77096 -36.41285 -34.42295 -33.26972 -32.62824 -30.52411 -29.77123 -28.06792 -26.61658 -25.26463 -24.15978 -23.10866 -21.66998 -20.84350 -20.02421 -18.43814 -17.66428 -16.35925 -15.64583 -15.55770 -15.36812 -14.86393 -14.55030 -14.36367 -13.85963 -13.57655 -13.28842 -13.08230 -12.88971 -12.77040 -12.41518 -12.15622 -12.04005 -11.84547 -11.75130 -11.62926 -11.27775 -11.22051 -11.06520 -10.89679 -10.86565 -10.60714 -10.47193 -10.44035 -10.32776 -10.03828 -9.68576 -9.35469 -9.04911 -8.75450 -7.37636 -6.83687 -6.62422 -4.30859 2.67562 2.88070 3.12297 3.17406 3.22868 3.44503 3.68382 4.01320 4.58176 4.69560 4.74378 4.81450 5.02425 5.05073 5.19602 5.29230 5.37511 5.54542 5.56493 5.62881 5.72778 5.75594 5.76161 5.85156 5.92914 5.95926 6.04367 6.07511 6.15922 6.27473 6.29251 6.31442 6.42129 6.51397 6.84696 7.06327 7.10422 7.12206 7.31453 7.61641 7.77826 8.02055 8.13447 8.24411 8.33140 8.69246 8.82278 8.99388 9.03221 10.30827 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019246 B = 0.004164 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.495410 B = 6722.783309 C = 7553.122047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.097 4.097 4 C -0.079 4.079 5 C -0.143 4.143 6 C -0.110 4.110 7 C -0.159 4.159 8 C 0.515 3.485 9 O -0.514 6.514 10 N -0.668 5.668 11 C 0.151 3.849 12 C -0.260 4.260 13 C -0.094 4.094 14 C -0.168 4.168 15 C 0.119 3.881 16 C -0.458 4.458 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.802 5.802 20 Si 0.910 3.090 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.207 4.207 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.396 0.604 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.121 0.879 44 H 0.278 0.722 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.919 -16.568 -0.007 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.135 4.135 4 C -0.082 4.082 5 C -0.200 4.200 6 C -0.148 4.148 7 C -0.217 4.217 8 C 0.301 3.699 9 O -0.388 6.388 10 N -0.312 5.312 11 C 0.059 3.941 12 C -0.281 4.281 13 C -0.114 4.114 14 C -0.188 4.188 15 C 0.116 3.884 16 C -0.488 4.488 17 H 0.094 0.906 18 C -0.143 4.143 19 N -0.428 5.428 20 Si 0.735 3.265 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.229 4.229 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.229 0.771 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.139 0.861 44 H 0.089 0.911 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.484 -15.705 0.116 16.087 hybrid contribution 0.080 0.331 -0.239 0.416 sum -3.403 -15.374 -0.123 15.747 Atomic orbital electron populations 1.21765 0.95983 1.01183 1.02029 1.21665 0.95752 0.96971 1.01986 1.21476 0.91900 0.96421 1.03728 1.20877 0.97598 0.92666 0.97059 1.21915 1.01034 1.00603 0.96483 1.21606 1.00589 0.99346 0.93232 1.21877 1.01685 1.01209 0.96891 1.20453 0.82384 0.90781 0.76282 1.90756 1.55004 1.45796 1.47261 1.43490 1.06898 1.07957 1.72857 1.17449 0.95418 0.82979 0.98215 1.20061 1.01005 0.97023 1.10030 1.20478 0.98544 0.92968 0.99361 1.21399 0.95899 0.99216 1.02308 1.17506 0.90167 0.90745 0.89995 1.19540 1.25876 0.90777 1.12640 0.90631 1.25868 0.93774 0.99704 0.94914 1.69809 1.35098 1.18189 1.19703 0.86271 0.79267 0.79600 0.81388 1.19624 1.20136 1.18544 1.20966 1.01703 0.94755 1.05449 0.93038 0.92750 0.92716 0.91760 0.91867 0.91303 0.90761 0.92312 0.91989 0.91279 0.90794 0.91702 0.92113 0.92640 0.92129 0.77053 0.89402 0.89098 0.86121 0.91089 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.99 16 2 C -0.13 -1.18 5.23 -26.73 -0.14 -1.32 16 3 C -0.10 -1.22 3.21 -26.73 -0.09 -1.31 16 4 C -0.08 -0.99 0.43 -155.66 -0.07 -1.06 16 5 C -0.14 -1.48 8.01 37.16 0.30 -1.18 16 6 C -0.11 -1.18 4.55 -26.73 -0.12 -1.30 16 7 C -0.16 -1.96 9.31 37.15 0.35 -1.61 16 8 C 0.51 9.27 4.95 -10.98 -0.05 9.22 16 9 O -0.51 -11.80 13.69 5.56 0.08 -11.72 16 10 N -0.67 -12.08 5.12 -9.91 -0.05 -12.13 16 11 C 0.15 3.47 6.26 -83.77 -0.52 2.95 16 12 C -0.26 -5.82 9.97 -39.10 -0.39 -6.21 16 13 C -0.09 -2.24 10.02 -39.69 -0.40 -2.64 16 14 C -0.17 -4.50 8.66 -38.84 -0.34 -4.83 16 15 C 0.12 3.32 5.55 -106.85 -0.59 2.73 16 16 C -0.46 -12.80 9.06 -37.74 -0.34 -13.14 16 17 H 0.08 2.05 7.87 -52.48 -0.41 1.64 16 18 C 0.07 1.93 5.25 -17.35 -0.09 1.84 16 19 N -0.80 -21.57 10.82 55.55 0.60 -20.97 16 20 Si 0.91 19.53 29.57 -169.99 -5.03 14.50 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.21 -5.45 8.39 -38.68 -0.32 -5.77 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 29 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 30 H 0.07 0.96 8.10 -51.92 -0.42 0.54 16 31 H 0.07 1.04 6.38 -51.93 -0.33 0.71 16 32 H 0.06 0.55 7.46 -51.93 -0.39 0.16 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 35 H 0.07 0.64 6.43 -51.92 -0.33 0.30 16 36 H 0.06 0.66 7.69 -51.93 -0.40 0.26 16 37 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.94 7.22 -51.93 -0.37 0.57 16 40 H 0.40 5.66 7.68 -40.82 -0.31 5.35 16 41 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 43 H 0.12 3.31 6.18 -52.48 -0.32 2.98 16 44 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 45 H 0.11 2.85 6.44 -52.48 -0.34 2.52 16 LS Contribution 351.58 15.07 5.30 5.30 Total: -1.00 -31.02 351.58 -8.62 -39.64 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.07 Total: 10.01 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -2.46 Total: -24.63 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.55 Total: -33.10 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.72 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.02 -8.62 -39.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456750224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.189 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds