Wall clock time and date at job start Tue Mar 31 2020 06:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47348 * 2 1 4 4 C 1.52999 * 109.47348 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47007 * 300.00314 * 4 3 2 6 6 C 1.53000 * 109.47067 * 60.00121 * 4 3 2 7 7 C 1.52995 * 109.47126 * 59.99983 * 6 4 3 8 8 C 1.50701 * 109.47364 * 180.02562 * 4 3 2 9 9 O 1.21280 * 120.00111 * 359.97438 * 8 4 3 10 10 N 1.34779 * 119.99777 * 180.02562 * 8 4 3 11 11 C 1.39933 * 119.99745 * 174.87609 * 10 8 4 12 12 C 1.39289 * 119.95025 * 146.37958 * 11 10 8 13 13 C 1.38486 * 120.42975 * 179.97438 * 12 11 10 14 14 C 1.37681 * 120.32074 * 0.02562 * 13 12 11 15 15 C 1.40740 * 119.88889 * 359.97438 * 14 13 12 16 16 C 1.41410 * 120.21010 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99421 * 151.74416 * 16 15 14 18 18 C 1.39926 * 120.00385 * 331.74706 * 16 15 14 19 19 N 1.30828 * 119.99815 * 349.00469 * 18 16 15 20 20 Si 1.86797 * 120.00029 * 169.00490 * 18 16 15 21 21 H 1.48501 * 109.47171 * 94.99009 * 20 18 16 22 22 H 1.48499 * 109.46973 * 214.98928 * 20 18 16 23 23 H 1.48497 * 109.47136 * 334.99104 * 20 18 16 24 24 C 1.38240 * 119.94638 * 326.10190 * 11 10 8 25 25 H 1.08996 * 109.47730 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47186 * 300.00142 * 1 2 3 27 27 H 1.09000 * 109.47059 * 59.99562 * 1 2 3 28 28 H 1.08998 * 109.46722 * 239.99954 * 2 1 3 29 29 H 1.09000 * 109.47059 * 120.00438 * 2 1 3 30 30 H 1.09008 * 109.47299 * 60.00311 * 3 2 1 31 31 H 1.09000 * 109.47398 * 300.00230 * 3 2 1 32 32 H 1.09000 * 109.46957 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47507 * 299.99748 * 5 4 3 34 34 H 1.09000 * 109.46946 * 59.99689 * 5 4 3 35 35 H 1.09009 * 109.46948 * 300.00245 * 6 4 3 36 36 H 1.08998 * 109.47228 * 180.02562 * 6 4 3 37 37 H 1.08998 * 109.47569 * 300.00406 * 7 6 4 38 38 H 1.08999 * 109.47584 * 180.02562 * 7 6 4 39 39 H 1.09005 * 109.47351 * 59.99927 * 7 6 4 40 40 H 0.97001 * 120.00355 * 354.86543 * 10 8 4 41 41 H 1.08002 * 119.78260 * 0.02562 * 12 11 10 42 42 H 1.08006 * 119.83807 * 180.02562 * 13 12 11 43 43 H 1.08011 * 120.05437 * 179.97438 * 14 13 12 44 44 H 0.97005 * 120.00053 * 180.02562 * 19 18 16 45 45 H 1.08005 * 120.16404 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0805 0.7209 1.2483 6 6 4.0795 0.7214 -1.2502 7 6 3.5690 1.4428 -2.4991 8 6 4.0724 2.8632 0.0000 9 8 3.2844 3.7851 0.0004 10 7 5.3975 3.1094 -0.0009 11 6 5.8648 4.4240 -0.1086 12 6 7.0339 4.8024 0.5474 13 6 7.5056 6.1006 0.4472 14 6 6.8230 7.0322 -0.3022 15 6 5.6403 6.6645 -0.9706 16 6 4.9335 7.6161 -1.7417 17 1 4.3390 7.2943 -2.5840 18 6 5.0044 8.9745 -1.4136 19 7 5.5406 9.3464 -0.2796 20 14 4.3336 10.2569 -2.5946 21 1 2.9404 10.6009 -2.2126 22 1 5.1790 11.4762 -2.5337 23 1 4.3480 9.7130 -3.9763 24 6 5.1685 5.3437 -0.8705 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 5.1705 0.7205 1.2476 33 1 3.7176 1.2345 2.1385 34 1 3.7171 -0.3067 1.2482 35 1 3.7161 -0.3063 -1.2502 36 1 5.1695 0.7210 -1.2505 37 1 2.4790 1.4429 -2.4986 38 1 3.9315 0.9289 -3.3893 39 1 3.9323 2.4705 -2.4991 40 1 6.0273 2.3754 0.0732 41 1 7.5764 4.0784 1.1372 42 1 8.4134 6.3835 0.9595 43 1 7.1946 8.0437 -0.3770 44 1 5.5894 10.2881 -0.0520 45 1 4.2646 5.0500 -1.3835 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456750224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:50 Heat of formation + Delta-G solvation = -63.376878 kcal Electronic energy + Delta-G solvation = -23468.896685 eV Core-core repulsion = 20256.137070 eV Total energy + Delta-G solvation = -3212.759615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76375 -39.42100 -37.82970 -36.21521 -34.89753 -33.73596 -31.76971 -31.48861 -29.83765 -27.51664 -27.27279 -25.30923 -24.13975 -23.12451 -22.69496 -21.52683 -19.80524 -19.43236 -17.79593 -17.27827 -17.03294 -16.65402 -16.46036 -16.10984 -15.71878 -15.19226 -14.82383 -14.70021 -14.44218 -14.18594 -14.00991 -13.88694 -13.57556 -13.28024 -13.12601 -12.99092 -12.84986 -12.74889 -12.61715 -12.57623 -12.23651 -12.13281 -11.96055 -11.77797 -11.75326 -11.57730 -11.39516 -11.22466 -11.19399 -10.83790 -10.42675 -9.37744 -8.72005 -8.59033 -6.40731 0.87080 0.98212 1.33795 1.45190 1.49501 1.85000 2.18963 2.26704 2.74133 3.59863 3.64886 3.71724 3.85277 4.09412 4.23722 4.33163 4.38290 4.44842 4.53731 4.60280 4.67657 4.70047 4.79280 4.88243 4.92031 5.00129 5.04321 5.07883 5.10359 5.12504 5.13469 5.17870 5.22473 5.25326 5.29587 5.32928 5.40690 5.46563 5.58512 5.76174 5.85169 6.06027 6.10572 6.34664 6.66526 6.68739 6.92709 6.99534 7.37671 8.35712 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019246 B = 0.004164 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.495410 B = 6722.783309 C = 7553.122047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.097 4.097 4 C -0.068 4.068 5 C -0.141 4.141 6 C -0.106 4.106 7 C -0.160 4.160 8 C 0.510 3.490 9 O -0.572 6.572 10 N -0.657 5.657 11 C 0.157 3.843 12 C -0.248 4.248 13 C -0.093 4.093 14 C -0.194 4.194 15 C 0.088 3.912 16 C -0.503 4.503 17 H 0.063 0.937 18 C 0.033 3.967 19 N -0.832 5.832 20 Si 0.985 3.015 21 H -0.267 1.267 22 H -0.258 1.258 23 H -0.260 1.260 24 C -0.233 4.233 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.015 0.985 40 H 0.418 0.582 41 H 0.132 0.868 42 H 0.124 0.876 43 H 0.106 0.894 44 H 0.287 0.713 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.950 -19.557 0.602 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.135 4.135 4 C -0.071 4.071 5 C -0.198 4.198 6 C -0.143 4.143 7 C -0.217 4.217 8 C 0.299 3.701 9 O -0.450 6.450 10 N -0.303 5.303 11 C 0.064 3.936 12 C -0.269 4.269 13 C -0.112 4.112 14 C -0.214 4.214 15 C 0.085 3.915 16 C -0.534 4.534 17 H 0.081 0.919 18 C -0.181 4.181 19 N -0.459 5.459 20 Si 0.805 3.195 21 H -0.191 1.191 22 H -0.182 1.182 23 H -0.184 1.184 24 C -0.255 4.255 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.035 0.965 40 H 0.256 0.744 41 H 0.150 0.850 42 H 0.142 0.858 43 H 0.124 0.876 44 H 0.098 0.902 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.483 -18.753 0.739 18.931 hybrid contribution -0.219 1.148 -0.367 1.225 sum -2.701 -17.605 0.372 17.815 Atomic orbital electron populations 1.21787 0.95923 1.02213 1.01271 1.21640 0.95819 0.94347 1.03638 1.21461 0.92063 0.98548 1.01390 1.20926 0.97416 0.89010 0.99785 1.21970 1.02075 1.01757 0.94045 1.21680 1.01436 1.00460 0.90701 1.21879 1.01636 0.99080 0.99114 1.21625 0.81627 0.92777 0.74086 1.90737 1.56364 1.48306 1.49565 1.43415 1.07722 1.06735 1.72379 1.17554 0.95067 0.84577 0.96445 1.20508 1.00288 0.97312 1.08840 1.20861 0.99139 0.93007 0.98161 1.21361 0.96379 0.99464 1.04217 1.17847 0.91091 0.91611 0.90944 1.19754 1.27602 0.92532 1.13466 0.91860 1.26726 0.93709 1.01115 0.96509 1.69857 1.35822 1.19185 1.21015 0.85165 0.78752 0.76881 0.78693 1.19149 1.18190 1.18370 1.20910 1.01821 0.95521 1.07238 0.91018 0.93540 0.93625 0.90067 0.89953 0.93712 0.93305 0.90733 0.93331 0.87908 0.87023 0.90356 0.92319 0.90595 0.96540 0.74383 0.84968 0.85834 0.87603 0.90208 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.91 71.98 0.71 -1.78 16 2 C -0.12 -1.86 5.23 30.59 0.16 -1.70 16 3 C -0.10 -2.39 3.21 30.59 0.10 -2.29 16 4 C -0.07 -1.61 0.43 -52.93 -0.02 -1.64 16 5 C -0.14 -2.40 8.01 71.98 0.58 -1.83 16 6 C -0.11 -1.94 4.55 30.59 0.14 -1.80 16 7 C -0.16 -3.84 9.31 71.98 0.67 -3.17 16 8 C 0.51 18.60 4.95 87.66 0.43 19.04 16 9 O -0.57 -27.94 13.69 -3.03 -0.04 -27.98 16 10 N -0.66 -23.21 5.12 -303.66 -1.55 -24.77 16 11 C 0.16 7.25 6.26 38.10 0.24 7.49 16 12 C -0.25 -10.65 9.97 22.58 0.23 -10.43 16 13 C -0.09 -4.34 10.02 22.20 0.22 -4.12 16 14 C -0.19 -10.74 8.66 22.75 0.20 -10.54 16 15 C 0.09 5.20 5.55 -21.31 -0.12 5.08 16 16 C -0.50 -30.08 9.06 23.46 0.21 -29.86 16 17 H 0.06 3.75 7.87 -2.91 -0.02 3.72 16 18 C 0.03 1.79 5.25 85.25 0.45 2.23 16 19 N -0.83 -46.44 10.82 21.82 0.24 -46.20 16 20 Si 0.98 41.43 29.57 68.60 2.03 43.45 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 22 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 C -0.23 -12.99 8.39 22.85 0.19 -12.80 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 1.04 6.43 -2.39 -0.02 1.03 16 29 H 0.08 1.03 6.43 -2.39 -0.02 1.01 16 30 H 0.04 1.30 8.10 -2.38 -0.02 1.28 16 31 H 0.05 1.44 6.38 -2.39 -0.02 1.42 16 32 H 0.07 1.05 7.46 -2.39 -0.02 1.04 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 1.11 6.43 -2.39 -0.02 1.09 16 35 H 0.11 1.32 6.43 -2.38 -0.02 1.31 16 36 H 0.08 1.27 7.69 -2.39 -0.02 1.25 16 37 H 0.06 1.40 6.43 -2.39 -0.02 1.39 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.02 0.52 7.22 -2.38 -0.02 0.50 16 40 H 0.42 10.76 7.68 -92.71 -0.71 10.05 16 41 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 42 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 43 H 0.11 6.07 6.18 -2.90 -0.02 6.05 16 44 H 0.29 14.40 8.30 -92.70 -0.77 13.63 16 45 H 0.08 4.82 6.44 -2.91 -0.02 4.80 16 Total: -1.00 -74.71 351.58 5.33 -69.39 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: 0.27 Total: 34.22 kcal Atomic # 6 Polarization: -52.50 SS G_CDS: 4.39 Total: -48.11 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -1.32 Total: -70.97 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.04 Total: -27.98 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -74.71 5.33 -69.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456750224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.011 kcal (2) G-P(sol) polarization free energy of solvation -74.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds