Wall clock time and date at job start Tue Mar 31 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 C 1.50698 * 109.47322 * 270.02023 * 7 6 5 9 9 O 1.21280 * 120.00207 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00201 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00054 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46773 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47269 * 299.99500 * 12 11 10 14 14 C 1.52993 * 109.47151 * 60.00038 * 12 11 10 15 15 C 1.50703 * 109.46662 * 179.97438 * 12 11 10 16 16 H 1.08003 * 120.00315 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99788 * 179.97438 * 15 12 11 18 18 N 1.31510 * 119.99893 * 359.97438 * 17 15 12 19 19 Si 1.86795 * 120.00093 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.47103 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47448 * 120.00124 * 19 17 15 22 22 H 1.48504 * 109.47086 * 240.00051 * 19 17 15 23 23 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 24 24 C 1.38230 * 119.99880 * 359.95582 * 23 6 5 25 25 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 30 30 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 31 31 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 32 32 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 33 33 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 34 34 H 0.97005 * 119.99680 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.47021 * 300.00127 * 11 10 8 36 36 H 1.09001 * 109.47459 * 60.00234 * 11 10 8 37 37 H 1.09008 * 109.46720 * 60.00284 * 13 12 11 38 38 H 1.08996 * 109.47261 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.47372 * 300.00709 * 13 12 11 40 40 H 1.09002 * 109.47192 * 60.00228 * 14 12 11 41 41 H 1.09004 * 109.46862 * 179.97438 * 14 12 11 42 42 H 1.09000 * 109.47250 * 299.99602 * 14 12 11 43 43 H 0.97002 * 120.00222 * 180.02562 * 18 17 15 44 44 H 1.08008 * 119.99983 * 179.97438 * 23 6 5 45 45 H 1.08007 * 119.99843 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 6 4.9637 5.4480 0.0001 9 8 5.5701 4.3977 -0.0004 10 7 5.6376 6.6152 -0.0004 11 6 7.1025 6.6152 -0.0009 12 6 7.6125 8.0578 -0.0007 13 6 7.1021 8.7793 -1.2496 14 6 7.1029 8.7787 1.2488 15 6 9.1195 8.0578 -0.0006 16 1 9.6595 7.1224 -0.0011 17 6 9.8089 9.2518 -0.0010 18 7 9.1513 10.3907 -0.0019 19 14 11.6768 9.2519 -0.0016 20 1 12.1719 7.8518 -0.0022 21 1 12.1715 9.9518 -1.2143 22 1 12.1722 9.9521 1.2107 23 6 2.7240 3.3755 1.1972 24 6 2.2628 2.0724 1.1971 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.0927 1.5598 -2.1325 31 1 2.9047 3.8844 -2.1324 32 1 3.0933 5.9619 -0.8899 33 1 3.0934 5.9618 0.8901 34 1 5.1525 7.4553 -0.0003 35 1 7.4662 6.1015 0.8891 36 1 7.4656 6.1013 -0.8909 37 1 6.0120 8.7793 -1.2492 38 1 7.4658 9.8068 -1.2497 39 1 7.4651 8.2657 -2.1398 40 1 7.4667 8.2647 2.1386 41 1 7.4666 9.8062 1.2492 42 1 6.0129 8.7787 1.2492 43 1 9.6363 11.2308 -0.0026 44 1 2.9041 3.8846 2.1326 45 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457991348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:59 Heat of formation + Delta-G solvation = -39.771727 kcal Electronic energy + Delta-G solvation = -22405.602749 eV Core-core repulsion = 19193.866730 eV Total energy + Delta-G solvation = -3211.736019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.89528 -38.78676 -36.37684 -34.64845 -33.24755 -31.48654 -30.90575 -30.65684 -27.48238 -25.73246 -25.51964 -24.73921 -23.18825 -22.73239 -20.82090 -19.90929 -18.77714 -16.89402 -16.28418 -15.86593 -15.73382 -15.39530 -14.72668 -14.72660 -14.51553 -13.86941 -13.83591 -13.38058 -13.33955 -13.01326 -12.92084 -12.79740 -12.23241 -12.05782 -11.91416 -11.76828 -11.39154 -11.29366 -11.20343 -10.91441 -10.88359 -10.85677 -10.66253 -10.38996 -10.20739 -9.63940 -9.55202 -9.26364 -8.87000 -8.78646 -8.47050 -8.44866 -8.29495 -6.02692 -4.12515 1.33334 1.45691 3.09591 3.26743 3.35359 3.40048 3.60202 4.02431 4.40559 4.59699 4.70427 4.80145 4.95749 5.00854 5.15637 5.24136 5.30259 5.31679 5.37036 5.46193 5.54972 5.59113 5.67128 5.78620 5.92914 6.07117 6.09680 6.24888 6.33688 6.42487 6.51001 6.60062 6.64271 6.78990 6.81887 6.93491 7.01556 7.03345 7.05588 7.35444 7.55191 7.69274 8.00639 8.07395 8.16587 8.38527 8.74720 8.88761 9.53325 10.98738 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.041347 B = 0.002648 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.025981 B =10569.882778 C =10750.601800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.061 4.061 7 C -0.106 4.106 8 C 0.504 3.496 9 O -0.544 6.544 10 N -0.719 5.719 11 C 0.133 3.867 12 C 0.055 3.945 13 C -0.131 4.131 14 C -0.131 4.131 15 C -0.504 4.504 16 H 0.058 0.942 17 C 0.065 3.935 18 N -0.886 5.886 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.103 4.103 24 C -0.118 4.118 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.397 0.603 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.006 0.994 38 H 0.085 0.915 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.085 0.915 42 H 0.006 0.994 43 H 0.259 0.741 44 H 0.119 0.881 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.437 -12.129 0.005 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.062 4.062 7 C -0.146 4.146 8 C 0.289 3.711 9 O -0.422 6.422 10 N -0.370 5.370 11 C 0.010 3.990 12 C 0.054 3.946 13 C -0.188 4.188 14 C -0.188 4.188 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.136 4.136 18 N -0.525 5.525 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.121 4.121 24 C -0.136 4.136 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.232 0.768 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.025 0.975 38 H 0.104 0.896 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.104 0.896 42 H 0.025 0.975 43 H 0.069 0.931 44 H 0.137 0.863 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.931 -12.679 0.004 21.152 hybrid contribution 0.910 0.566 -0.001 1.071 sum -16.022 -12.113 0.004 20.085 Atomic orbital electron populations 1.21745 0.94891 1.01478 1.02180 1.20523 0.96002 0.92906 1.02733 1.19832 0.99697 0.96050 0.93294 1.20925 1.00498 0.94769 0.97372 1.20960 0.98805 0.94862 0.97449 1.19304 0.98426 0.94916 0.93506 1.20720 0.93676 0.95251 1.04973 1.20413 0.89211 0.84334 0.77094 1.90692 1.70265 1.31396 1.49872 1.46326 1.09163 1.07749 1.73735 1.21691 0.76428 1.00474 1.00387 1.18367 0.95436 0.87943 0.92840 1.21828 0.95190 1.04248 0.97569 1.21827 0.95192 1.04238 0.97572 1.21030 0.89999 0.92651 1.50609 0.92419 1.24886 0.98336 0.95541 0.94838 1.69811 1.34757 0.97173 1.50745 0.86519 0.85717 0.78151 0.77522 1.19767 1.21065 1.21059 1.20963 0.98782 0.94883 0.97448 1.20924 1.00489 0.94788 0.97371 0.92600 0.92593 0.92584 0.91174 0.91174 0.86368 0.86270 0.88260 0.88264 0.76757 0.92849 0.92846 0.97467 0.89596 0.95477 0.95473 0.89609 0.97466 0.93073 0.86268 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.68 16 2 C -0.08 -0.71 6.06 -27.89 -0.17 -0.88 16 3 C -0.09 -0.99 5.13 -104.63 -0.54 -1.52 16 4 C -0.12 -1.36 9.70 -39.58 -0.38 -1.75 16 5 C -0.10 -1.30 9.70 -39.59 -0.38 -1.69 16 6 C -0.06 -0.81 4.37 -104.62 -0.46 -1.27 16 7 C -0.11 -1.32 5.83 -29.04 -0.17 -1.49 16 8 C 0.50 8.64 7.82 -10.99 -0.09 8.56 16 9 O -0.54 -11.59 16.03 5.56 0.09 -11.50 16 10 N -0.72 -12.62 4.96 -60.29 -0.30 -12.92 16 11 C 0.13 2.84 4.50 -4.04 -0.02 2.82 16 12 C 0.05 1.27 0.50 -155.66 -0.08 1.19 16 13 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 14 C -0.13 -2.93 8.08 37.15 0.30 -2.63 16 15 C -0.50 -13.25 8.01 -34.44 -0.28 -13.52 16 16 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 17 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 18 N -0.89 -23.58 9.35 55.43 0.52 -23.06 16 19 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.10 -1.30 9.70 -39.58 -0.38 -1.69 16 24 C -0.12 -1.36 9.70 -39.59 -0.38 -1.75 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 33 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 34 H 0.40 6.19 6.16 -40.82 -0.25 5.94 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.01 0.12 6.86 -51.92 -0.36 -0.23 16 38 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 42 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 43 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 44 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 45 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -29.70 363.10 -9.16 -38.86 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.47 Total: 4.68 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -2.45 Total: -17.29 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.22 Total: -35.99 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.70 -9.16 -38.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457991348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.911 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds