Wall clock time and date at job start Tue Mar 31 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 C 1.50698 * 109.47322 * 270.02023 * 7 6 5 9 9 O 1.21280 * 120.00207 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00201 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00054 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46773 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47269 * 299.99500 * 12 11 10 14 14 C 1.52993 * 109.47151 * 60.00038 * 12 11 10 15 15 C 1.50703 * 109.46662 * 179.97438 * 12 11 10 16 16 H 1.08003 * 120.00315 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99788 * 179.97438 * 15 12 11 18 18 N 1.31510 * 119.99893 * 359.97438 * 17 15 12 19 19 Si 1.86795 * 120.00093 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.47103 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47448 * 120.00124 * 19 17 15 22 22 H 1.48504 * 109.47086 * 240.00051 * 19 17 15 23 23 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 24 24 C 1.38230 * 119.99880 * 359.95582 * 23 6 5 25 25 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 30 30 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 31 31 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 32 32 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 33 33 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 34 34 H 0.97005 * 119.99680 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.47021 * 300.00127 * 11 10 8 36 36 H 1.09001 * 109.47459 * 60.00234 * 11 10 8 37 37 H 1.09008 * 109.46720 * 60.00284 * 13 12 11 38 38 H 1.08996 * 109.47261 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.47372 * 300.00709 * 13 12 11 40 40 H 1.09002 * 109.47192 * 60.00228 * 14 12 11 41 41 H 1.09004 * 109.46862 * 179.97438 * 14 12 11 42 42 H 1.09000 * 109.47250 * 299.99602 * 14 12 11 43 43 H 0.97002 * 120.00222 * 180.02562 * 18 17 15 44 44 H 1.08008 * 119.99983 * 179.97438 * 23 6 5 45 45 H 1.08007 * 119.99843 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 6 4.9637 5.4480 0.0001 9 8 5.5701 4.3977 -0.0004 10 7 5.6376 6.6152 -0.0004 11 6 7.1025 6.6152 -0.0009 12 6 7.6125 8.0578 -0.0007 13 6 7.1021 8.7793 -1.2496 14 6 7.1029 8.7787 1.2488 15 6 9.1195 8.0578 -0.0006 16 1 9.6595 7.1224 -0.0011 17 6 9.8089 9.2518 -0.0010 18 7 9.1513 10.3907 -0.0019 19 14 11.6768 9.2519 -0.0016 20 1 12.1719 7.8518 -0.0022 21 1 12.1715 9.9518 -1.2143 22 1 12.1722 9.9521 1.2107 23 6 2.7240 3.3755 1.1972 24 6 2.2628 2.0724 1.1971 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.0927 1.5598 -2.1325 31 1 2.9047 3.8844 -2.1324 32 1 3.0933 5.9619 -0.8899 33 1 3.0934 5.9618 0.8901 34 1 5.1525 7.4553 -0.0003 35 1 7.4662 6.1015 0.8891 36 1 7.4656 6.1013 -0.8909 37 1 6.0120 8.7793 -1.2492 38 1 7.4658 9.8068 -1.2497 39 1 7.4651 8.2657 -2.1398 40 1 7.4667 8.2647 2.1386 41 1 7.4666 9.8062 1.2492 42 1 6.0129 8.7787 1.2492 43 1 9.6363 11.2308 -0.0026 44 1 2.9041 3.8846 2.1326 45 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457991348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:58 Heat of formation + Delta-G solvation = -54.647985 kcal Electronic energy + Delta-G solvation = -22406.247832 eV Core-core repulsion = 19193.866730 eV Total energy + Delta-G solvation = -3212.381102 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.05124 -39.95825 -38.09917 -35.48562 -34.96135 -32.90263 -31.95997 -31.78113 -28.53155 -27.55533 -27.37353 -26.33492 -24.04643 -23.61403 -21.87284 -21.11670 -20.58109 -18.37606 -17.63433 -17.26625 -16.84038 -16.61706 -16.33755 -15.99112 -15.80170 -14.95270 -14.73464 -14.66444 -14.55693 -14.45549 -14.13525 -13.98568 -13.70791 -13.24338 -13.09857 -12.92214 -12.90972 -12.65293 -12.57566 -12.51114 -12.24480 -12.14453 -12.03549 -11.68597 -11.63106 -11.48116 -11.26621 -10.85835 -10.67434 -10.40390 -9.90717 -9.76576 -9.38294 -8.03050 -6.18508 0.42801 0.55835 1.40092 1.44361 1.53686 1.75323 2.34935 2.50241 2.96129 3.20339 3.72980 3.91470 3.96760 4.13498 4.18032 4.22872 4.47016 4.48021 4.52853 4.53746 4.61163 4.64034 4.72818 4.76417 4.79778 5.00532 5.06812 5.07449 5.10106 5.12167 5.20188 5.20701 5.25689 5.38585 5.40434 5.54494 5.62460 5.67101 5.67868 5.72217 5.75853 6.16116 6.16888 6.22273 6.43736 6.73117 6.85878 7.39114 7.49117 8.95868 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.041347 B = 0.002648 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.025981 B =10569.882778 C =10750.601800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.118 4.118 6 C -0.083 4.083 7 C -0.094 4.094 8 C 0.504 3.496 9 O -0.589 6.589 10 N -0.712 5.712 11 C 0.150 3.850 12 C 0.050 3.950 13 C -0.121 4.121 14 C -0.121 4.121 15 C -0.528 4.528 16 H 0.042 0.958 17 C 0.027 3.973 18 N -0.898 5.898 19 Si 0.944 3.056 20 H -0.277 1.277 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.118 4.118 24 C -0.129 4.129 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.410 0.590 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.040 0.960 38 H 0.062 0.938 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.260 0.740 44 H 0.127 0.873 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.127 -12.517 0.008 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.136 4.136 6 C -0.084 4.084 7 C -0.134 4.134 8 C 0.292 3.708 9 O -0.470 6.470 10 N -0.364 5.364 11 C 0.025 3.975 12 C 0.049 3.951 13 C -0.179 4.179 14 C -0.178 4.178 15 C -0.566 4.566 16 H 0.060 0.940 17 C -0.172 4.172 18 N -0.537 5.537 19 Si 0.771 3.229 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.136 4.136 24 C -0.146 4.146 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.153 0.847 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.248 0.752 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.145 0.855 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.651 -13.045 0.007 22.760 hybrid contribution 1.413 0.620 -0.002 1.543 sum -17.237 -12.425 0.006 21.249 Atomic orbital electron populations 1.21717 0.93810 1.02417 1.01983 1.20581 0.96861 0.91317 1.03368 1.20194 0.98829 0.97249 0.93012 1.21224 1.00291 0.94690 0.98447 1.21210 0.99115 0.95555 0.97760 1.19490 0.99402 0.95547 0.93925 1.20725 0.89374 0.95687 1.07568 1.21250 0.91167 0.83104 0.75263 1.90674 1.71683 1.32947 1.51694 1.46147 1.07469 1.08865 1.73886 1.21207 0.78895 0.98806 0.98548 1.18371 0.94011 0.89073 0.93616 1.21670 0.97227 1.02314 0.96643 1.21669 0.97228 1.02303 0.96646 1.21300 0.92055 0.92163 1.51101 0.94016 1.25448 1.01615 0.95405 0.94761 1.69907 1.35729 0.97315 1.50753 0.85721 0.81837 0.77747 0.77577 1.20179 1.20664 1.20650 1.21214 0.99093 0.95578 0.97760 1.21222 1.00275 0.94704 0.98444 0.92802 0.92791 0.91091 0.90554 0.90556 0.84686 0.85536 0.85551 0.85553 0.75246 0.94775 0.94771 0.94110 0.91899 0.96441 0.96436 0.91913 0.94109 0.93015 0.85530 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 71.98 0.71 -1.04 16 2 C -0.08 -1.26 6.06 29.85 0.18 -1.08 16 3 C -0.09 -1.93 5.13 -19.87 -0.10 -2.04 16 4 C -0.13 -2.82 9.70 22.27 0.22 -2.60 16 5 C -0.12 -2.87 9.70 22.27 0.22 -2.65 16 6 C -0.08 -2.09 4.37 -19.86 -0.09 -2.18 16 7 C -0.09 -2.11 5.83 29.10 0.17 -1.94 16 8 C 0.50 16.63 7.82 87.66 0.69 17.32 16 9 O -0.59 -25.08 16.03 -3.03 -0.05 -25.13 16 10 N -0.71 -23.93 4.96 -463.06 -2.30 -26.23 16 11 C 0.15 6.41 4.50 86.38 0.39 6.80 16 12 C 0.05 2.30 0.50 -52.93 -0.03 2.28 16 13 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 14 C -0.12 -5.31 8.08 71.98 0.58 -4.72 16 15 C -0.53 -28.12 8.01 25.60 0.21 -27.91 16 16 H 0.04 2.29 7.74 -2.91 -0.02 2.27 16 17 C 0.03 1.45 5.15 84.66 0.44 1.89 16 18 N -0.90 -47.82 9.35 21.45 0.20 -47.62 16 19 Si 0.94 42.86 29.54 68.60 2.03 44.89 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 C -0.12 -2.87 9.70 22.27 0.22 -2.65 16 24 C -0.13 -2.82 9.70 22.27 0.22 -2.60 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 29 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 30 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 31 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.13 2.15 8.09 -2.39 -0.02 2.13 16 33 H 0.13 2.15 8.09 -2.39 -0.02 2.13 16 34 H 0.41 11.60 6.16 -92.70 -0.57 11.03 16 35 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.04 1.47 6.86 -2.38 -0.02 1.45 16 38 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 3.07 6.07 -2.38 -0.01 3.06 16 42 H 0.04 1.47 6.86 -2.39 -0.02 1.45 16 43 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 44 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 45 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -64.48 363.10 4.86 -59.62 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.39 Total: 22.31 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: 4.59 Total: -27.85 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -2.10 Total: -73.84 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.05 Total: -25.13 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -64.48 4.86 -59.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457991348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.972 kcal (2) G-P(sol) polarization free energy of solvation -64.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds