Wall clock time and date at job start Tue Mar 31 2020 06:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 C 1.50700 * 109.47054 * 85.17110 * 9 8 3 11 11 O 1.21283 * 119.99867 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00248 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00334 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47431 * 180.02562 * 13 12 10 15 15 C 1.53008 * 109.46447 * 299.99483 * 14 13 12 16 16 C 1.52998 * 109.47323 * 59.99157 * 14 13 12 17 17 C 1.50698 * 109.47223 * 180.02562 * 14 13 12 18 18 H 1.07998 * 119.99917 * 359.97438 * 17 14 13 19 19 C 1.37880 * 119.99845 * 179.97438 * 17 14 13 20 20 N 1.31512 * 119.99831 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 119.99701 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47214 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.46981 * 119.99747 * 21 19 17 24 24 H 1.48501 * 109.47105 * 239.99681 * 21 19 17 25 25 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 26 26 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 27 27 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 29 29 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 30 30 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 32 32 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47771 * 205.17511 * 9 8 3 35 35 H 1.09007 * 109.47111 * 325.17972 * 9 8 3 36 36 H 0.97005 * 120.00026 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.46938 * 299.99888 * 13 12 10 38 38 H 1.08995 * 109.47102 * 59.99828 * 13 12 10 39 39 H 1.09004 * 109.46775 * 60.00264 * 15 14 13 40 40 H 1.09006 * 109.46829 * 179.97438 * 15 14 13 41 41 H 1.08995 * 109.47352 * 300.00211 * 15 14 13 42 42 H 1.09000 * 109.46916 * 60.00681 * 16 14 13 43 43 H 1.08997 * 109.46747 * 180.02562 * 16 14 13 44 44 H 1.08993 * 109.47284 * 300.00478 * 16 14 13 45 45 H 0.97004 * 119.99677 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 6 2.9975 0.6381 2.9854 11 8 4.0263 0.6220 2.3435 12 7 2.9120 -0.0536 4.1389 13 6 4.0621 -0.8247 4.6177 14 6 3.7028 -1.5102 5.9375 15 6 3.3303 -0.4513 6.9772 16 6 2.5150 -2.4492 5.7177 17 6 4.8860 -2.3028 6.4302 18 1 5.8024 -2.3166 5.8589 19 6 4.7986 -3.0104 7.6103 20 7 3.6828 -2.9932 8.3062 21 14 6.2651 -3.9935 8.2207 22 1 7.3909 -3.8491 7.2632 23 1 6.6810 -3.4863 9.5531 24 1 5.8893 -5.4258 8.3316 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2578 1.5015 -2.1247 31 1 3.0694 3.8259 -2.1255 32 1 3.3047 5.0489 -0.0011 33 1 2.7284 3.9470 2.1240 34 1 1.5501 2.1866 3.2337 35 1 0.9680 0.7630 2.3376 36 1 2.0890 -0.0410 4.6522 37 1 4.3272 -1.5792 3.8771 38 1 4.9083 -0.1557 4.7739 39 1 2.4746 0.1224 6.6210 40 1 3.0739 -0.9397 7.9174 41 1 4.1764 0.2177 7.1337 42 1 2.7804 -3.2035 4.9770 43 1 2.2588 -2.9372 6.6581 44 1 1.6594 -1.8755 5.3616 45 1 3.6214 -3.4907 9.1367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457999065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:02 Heat of formation + Delta-G solvation = -37.151901 kcal Electronic energy + Delta-G solvation = -23120.287633 eV Core-core repulsion = 19908.665218 eV Total energy + Delta-G solvation = -3211.622415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09942 -38.67038 -36.33092 -34.31675 -33.24906 -32.50368 -30.84620 -29.53149 -27.78484 -25.73517 -25.51482 -24.67704 -23.82397 -22.05352 -20.75609 -19.83897 -18.77276 -16.92515 -16.42645 -16.07343 -15.74103 -15.36690 -14.74400 -14.57489 -14.52214 -13.85401 -13.61791 -13.36480 -13.13374 -12.96448 -12.87015 -12.79417 -12.18940 -12.10939 -11.85087 -11.80264 -11.36414 -11.30938 -11.20264 -10.88218 -10.81252 -10.69738 -10.65661 -10.39198 -10.20927 -9.64190 -9.55655 -9.27736 -8.80017 -8.74105 -8.52590 -8.45114 -8.29805 -6.02950 -4.12817 1.37219 1.43603 3.08777 3.26646 3.35294 3.39997 3.62189 4.01491 4.40392 4.65754 4.73781 4.90784 4.96231 5.11103 5.22828 5.23982 5.27056 5.37346 5.41814 5.50263 5.57067 5.63400 5.84337 5.89161 6.01089 6.11521 6.21271 6.25017 6.33316 6.49795 6.50739 6.51983 6.69843 6.78675 6.81566 6.93151 7.01255 7.04215 7.05099 7.35129 7.54980 7.69029 8.00315 8.06979 8.16273 8.38292 8.74250 8.88501 9.53134 10.98472 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028199 B = 0.003306 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.708584 B = 8466.286741 C = 8709.374640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.126 4.126 7 C -0.106 4.106 8 C -0.055 4.055 9 C -0.110 4.110 10 C 0.505 3.495 11 O -0.543 6.543 12 N -0.719 5.719 13 C 0.133 3.867 14 C 0.055 3.945 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.505 4.505 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.397 0.603 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.006 0.994 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.006 0.994 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.365 10.041 -13.836 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.064 4.064 4 C -0.138 4.138 5 C -0.140 4.140 6 C -0.144 4.144 7 C -0.124 4.124 8 C -0.056 4.056 9 C -0.150 4.150 10 C 0.290 3.710 11 O -0.421 6.421 12 N -0.370 5.370 13 C 0.010 3.990 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.544 4.544 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.232 0.768 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.025 0.975 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.104 0.896 44 H 0.025 0.975 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.681 9.929 -14.108 18.884 hybrid contribution 0.488 -0.497 0.676 0.970 sum -7.193 9.432 -13.433 17.920 Atomic orbital electron populations 1.21767 0.94761 1.01826 1.02009 1.20576 0.95887 0.92901 1.03342 1.19674 0.98338 0.95727 0.92617 1.20954 1.00345 0.95173 0.97280 1.21059 1.00210 0.94848 0.97907 1.21036 1.00918 0.99879 0.92584 1.20980 0.98738 0.94532 0.98128 1.19154 0.99320 0.93855 0.93242 1.20792 0.98222 1.00229 0.95778 1.20369 0.89156 0.80082 0.81363 1.90695 1.31308 1.63464 1.56585 1.46327 1.18014 1.49492 1.23148 1.21692 0.86487 0.93437 0.97362 1.18360 0.95080 0.92387 0.88692 1.21829 0.96715 0.97267 1.03009 1.21821 0.95881 0.98867 1.02222 1.21035 0.98067 1.28712 1.06554 0.92417 1.24881 0.95885 0.96315 0.96458 1.69814 1.25280 1.42136 1.15249 0.86525 0.82941 0.79784 0.78696 1.19753 1.21060 1.21052 0.92487 0.92631 0.92250 0.91077 0.90707 0.86361 0.86424 0.86337 0.86266 0.88366 0.88065 0.76783 0.92843 0.92848 0.97497 0.89603 0.95483 0.95480 0.89620 0.97483 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.72 37.16 0.36 -1.01 16 2 C -0.09 -1.05 5.38 -27.89 -0.15 -1.20 16 3 C -0.06 -0.82 5.13 -104.63 -0.54 -1.36 16 4 C -0.12 -1.41 9.68 -39.58 -0.38 -1.79 16 5 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 6 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 7 C -0.11 -1.34 9.68 -39.58 -0.38 -1.72 16 8 C -0.06 -0.74 4.37 -104.63 -0.46 -1.20 16 9 C -0.11 -1.40 5.16 -29.04 -0.15 -1.55 16 10 C 0.51 8.62 7.04 -10.99 -0.08 8.54 16 11 O -0.54 -11.44 16.03 5.55 0.09 -11.35 16 12 N -0.72 -12.56 4.96 -60.30 -0.30 -12.86 16 13 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 14 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 15 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 16 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 17 C -0.51 -13.23 8.01 -34.44 -0.28 -13.51 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 20 N -0.89 -23.52 9.35 55.43 0.52 -23.00 16 21 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H 0.06 0.52 6.83 -51.93 -0.35 0.16 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.77 8.05 -51.93 -0.42 0.36 16 29 H 0.07 1.01 6.41 -51.93 -0.33 0.68 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 33 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.10 1.03 8.05 -51.93 -0.42 0.61 16 35 H 0.10 1.10 5.63 -51.93 -0.29 0.80 16 36 H 0.40 6.18 6.16 -40.82 -0.25 5.93 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 40 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 44 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 45 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 355.94 15.07 5.36 5.36 Total: -1.00 -29.47 355.94 -8.97 -38.43 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.18 Total: 5.68 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -2.44 Total: -17.97 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.22 Total: -35.86 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.47 -8.97 -38.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457999065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.281 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds