Wall clock time and date at job start Tue Mar 31 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 C 1.50700 * 109.47054 * 85.17110 * 9 8 3 11 11 O 1.21283 * 119.99867 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00248 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00334 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47431 * 180.02562 * 13 12 10 15 15 C 1.53008 * 109.46447 * 299.99483 * 14 13 12 16 16 C 1.52998 * 109.47323 * 59.99157 * 14 13 12 17 17 C 1.50698 * 109.47223 * 180.02562 * 14 13 12 18 18 H 1.07998 * 119.99917 * 359.97438 * 17 14 13 19 19 C 1.37880 * 119.99845 * 179.97438 * 17 14 13 20 20 N 1.31512 * 119.99831 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 119.99701 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47214 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.46981 * 119.99747 * 21 19 17 24 24 H 1.48501 * 109.47105 * 239.99681 * 21 19 17 25 25 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 26 26 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 27 27 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 29 29 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 30 30 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 32 32 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47771 * 205.17511 * 9 8 3 35 35 H 1.09007 * 109.47111 * 325.17972 * 9 8 3 36 36 H 0.97005 * 120.00026 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.46938 * 299.99888 * 13 12 10 38 38 H 1.08995 * 109.47102 * 59.99828 * 13 12 10 39 39 H 1.09004 * 109.46775 * 60.00264 * 15 14 13 40 40 H 1.09006 * 109.46829 * 179.97438 * 15 14 13 41 41 H 1.08995 * 109.47352 * 300.00211 * 15 14 13 42 42 H 1.09000 * 109.46916 * 60.00681 * 16 14 13 43 43 H 1.08997 * 109.46747 * 180.02562 * 16 14 13 44 44 H 1.08993 * 109.47284 * 300.00478 * 16 14 13 45 45 H 0.97004 * 119.99677 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 6 2.9975 0.6381 2.9854 11 8 4.0263 0.6220 2.3435 12 7 2.9120 -0.0536 4.1389 13 6 4.0621 -0.8247 4.6177 14 6 3.7028 -1.5102 5.9375 15 6 3.3303 -0.4513 6.9772 16 6 2.5150 -2.4492 5.7177 17 6 4.8860 -2.3028 6.4302 18 1 5.8024 -2.3166 5.8589 19 6 4.7986 -3.0104 7.6103 20 7 3.6828 -2.9932 8.3062 21 14 6.2651 -3.9935 8.2207 22 1 7.3909 -3.8491 7.2632 23 1 6.6810 -3.4863 9.5531 24 1 5.8893 -5.4258 8.3316 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2578 1.5015 -2.1247 31 1 3.0694 3.8259 -2.1255 32 1 3.3047 5.0489 -0.0011 33 1 2.7284 3.9470 2.1240 34 1 1.5501 2.1866 3.2337 35 1 0.9680 0.7630 2.3376 36 1 2.0890 -0.0410 4.6522 37 1 4.3272 -1.5792 3.8771 38 1 4.9083 -0.1557 4.7739 39 1 2.4746 0.1224 6.6210 40 1 3.0739 -0.9397 7.9174 41 1 4.1764 0.2177 7.1337 42 1 2.7804 -3.2035 4.9770 43 1 2.2588 -2.9372 6.6581 44 1 1.6594 -1.8755 5.3616 45 1 3.6214 -3.4907 9.1367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457999065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:01 Heat of formation + Delta-G solvation = -52.106034 kcal Electronic energy + Delta-G solvation = -23120.936093 eV Core-core repulsion = 19908.665218 eV Total energy + Delta-G solvation = -3212.270875 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.23103 -39.90188 -38.05976 -35.18026 -34.96151 -33.54481 -32.61697 -30.37654 -28.89827 -27.55554 -27.38453 -26.33041 -24.67934 -23.04097 -21.84078 -21.04028 -20.57124 -18.38906 -17.64888 -17.36280 -17.07576 -16.68097 -16.35849 -15.94203 -15.77558 -14.97555 -14.76003 -14.60037 -14.56792 -14.32313 -14.03610 -13.90310 -13.78666 -13.25238 -13.10105 -12.98002 -12.81965 -12.65345 -12.63037 -12.57682 -12.24340 -12.15525 -12.12536 -11.67980 -11.53760 -11.48048 -11.26398 -10.86558 -10.67673 -10.40271 -9.90942 -9.65827 -9.44500 -8.02995 -6.18545 0.46282 0.54598 1.40351 1.44667 1.53992 1.74179 2.35022 2.50563 2.96716 3.20543 3.70241 3.88154 4.01423 4.12027 4.12982 4.32368 4.36609 4.46369 4.50456 4.52939 4.55623 4.66866 4.72715 4.74625 4.78126 5.00292 5.04901 5.06706 5.10162 5.12173 5.19238 5.20134 5.26287 5.38508 5.41110 5.61252 5.62931 5.65274 5.67135 5.67963 5.78968 6.16024 6.18025 6.22297 6.43784 6.72191 6.85902 7.38169 7.49256 8.95933 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028199 B = 0.003306 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.708584 B = 8466.286741 C = 8709.374640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.080 4.080 4 C -0.132 4.132 5 C -0.125 4.125 6 C -0.135 4.135 7 C -0.122 4.122 8 C -0.079 4.079 9 C -0.099 4.099 10 C 0.507 3.493 11 O -0.586 6.586 12 N -0.712 5.712 13 C 0.150 3.850 14 C 0.051 3.949 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.529 4.529 18 H 0.042 0.958 19 C 0.029 3.971 20 N -0.898 5.898 21 Si 0.944 3.056 22 H -0.277 1.277 23 H -0.281 1.281 24 H -0.280 1.280 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.135 0.865 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.409 0.591 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.062 0.938 44 H 0.039 0.961 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.634 11.064 -14.649 20.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 C -0.080 4.080 4 C -0.150 4.150 5 C -0.143 4.143 6 C -0.153 4.153 7 C -0.140 4.140 8 C -0.079 4.079 9 C -0.138 4.138 10 C 0.294 3.706 11 O -0.466 6.466 12 N -0.364 5.364 13 C 0.026 3.974 14 C 0.051 3.949 15 C -0.178 4.178 16 C -0.178 4.178 17 C -0.568 4.568 18 H 0.060 0.940 19 C -0.171 4.171 20 N -0.537 5.537 21 Si 0.771 3.229 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.206 1.206 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.153 0.847 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.247 0.753 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.036 0.964 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.983 10.958 -14.913 20.571 hybrid contribution 0.910 -0.782 0.863 1.478 sum -8.074 10.176 -14.050 19.135 Atomic orbital electron populations 1.21736 0.92903 1.02543 1.02630 1.20567 0.97493 0.92213 1.02333 1.19931 0.98709 0.96245 0.93103 1.21260 1.00215 0.95784 0.97695 1.21427 0.99212 0.94687 0.98960 1.21378 1.00509 1.00997 0.92382 1.21257 0.98867 0.94650 0.99178 1.19336 1.00549 0.94473 0.93574 1.20784 0.96349 1.00500 0.96198 1.21135 0.89837 0.79318 0.80279 1.90675 1.33467 1.64811 1.57659 1.46146 1.17326 1.49225 1.23692 1.21211 0.87321 0.92793 0.96101 1.18356 0.94423 0.92625 0.89531 1.21671 0.97563 0.96900 1.01692 1.21660 0.96657 0.98687 1.00767 1.21311 0.98748 1.29776 1.06937 0.94004 1.25436 0.97910 0.97111 0.96637 1.69910 1.26156 1.42333 1.15301 0.85729 0.80420 0.78732 0.78053 1.20158 1.20665 1.20632 0.92074 0.91787 0.91464 0.90838 0.92944 0.84702 0.83925 0.84182 0.85317 0.85698 0.86030 0.75331 0.94737 0.94775 0.94190 0.91891 0.96466 0.96432 0.91914 0.94179 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.72 71.98 0.70 -1.66 16 2 C -0.09 -1.98 5.38 29.85 0.16 -1.82 16 3 C -0.08 -1.97 5.13 -19.87 -0.10 -2.07 16 4 C -0.13 -2.89 9.68 22.27 0.22 -2.67 16 5 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 6 C -0.13 -2.83 10.05 22.27 0.22 -2.61 16 7 C -0.12 -2.89 9.68 22.27 0.22 -2.68 16 8 C -0.08 -2.01 4.37 -19.87 -0.09 -2.09 16 9 C -0.10 -2.31 5.16 29.10 0.15 -2.16 16 10 C 0.51 16.84 7.04 87.66 0.62 17.46 16 11 O -0.59 -24.86 16.03 -3.04 -0.05 -24.90 16 12 N -0.71 -24.07 4.96 -463.07 -2.30 -26.37 16 13 C 0.15 6.42 4.50 86.38 0.39 6.81 16 14 C 0.05 2.36 0.50 -52.93 -0.03 2.34 16 15 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 16 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 17 C -0.53 -28.18 8.01 25.60 0.21 -27.97 16 18 H 0.04 2.30 7.74 -2.91 -0.02 2.27 16 19 C 0.03 1.52 5.15 84.66 0.44 1.96 16 20 N -0.90 -47.74 9.35 21.45 0.20 -47.54 16 21 Si 0.94 42.76 29.54 68.60 2.03 44.79 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H 0.06 0.96 6.83 -2.39 -0.02 0.95 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.55 8.05 -2.38 -0.02 1.53 16 29 H 0.05 1.39 6.41 -2.39 -0.02 1.38 16 30 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 32 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 34 H 0.12 2.24 8.05 -2.39 -0.02 2.22 16 35 H 0.12 2.33 5.63 -2.38 -0.01 2.31 16 36 H 0.41 11.73 6.16 -92.70 -0.57 11.16 16 37 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.04 1.44 6.86 -2.39 -0.02 1.43 16 40 H 0.06 3.08 6.07 -2.38 -0.01 3.07 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 44 H 0.04 1.44 6.86 -2.39 -0.02 1.43 16 45 H 0.26 13.28 8.31 -92.71 -0.77 12.51 16 Total: -1.00 -64.07 355.94 4.77 -59.31 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.40 Total: 23.58 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 4.48 Total: -28.87 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -2.10 Total: -73.90 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.05 Total: -24.90 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -64.07 4.77 -59.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457999065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.201 kcal (2) G-P(sol) polarization free energy of solvation -64.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds