Wall clock time and date at job start Tue Mar 31 2020 06:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47071 * 2 1 4 4 C 1.52995 * 109.47234 * 182.48465 * 3 2 1 5 5 C 1.52998 * 109.47105 * 302.90251 * 4 3 2 6 6 C 1.53005 * 109.47147 * 282.62934 * 5 4 3 7 7 C 1.52998 * 109.47021 * 185.06233 * 6 5 4 8 8 C 1.50699 * 109.46944 * 62.90082 * 4 3 2 9 9 O 1.21276 * 120.00458 * 325.00571 * 8 4 3 10 10 N 1.34779 * 119.99778 * 145.00895 * 8 4 3 11 11 C 1.37148 * 119.99888 * 200.24189 * 10 8 4 12 12 H 1.08001 * 119.99645 * 215.34387 * 11 10 8 13 13 C 1.38885 * 119.99926 * 35.34021 * 11 10 8 14 14 N 1.31427 * 120.00176 * 24.37770 * 13 11 10 15 15 Si 1.86798 * 120.00170 * 204.37507 * 13 11 10 16 16 H 1.48500 * 109.46865 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47532 * 120.00104 * 15 13 11 18 18 H 1.48502 * 109.47111 * 240.00355 * 15 13 11 19 19 C 1.39787 * 120.00176 * 20.24101 * 10 8 4 20 20 C 1.38959 * 120.07952 * 63.34908 * 19 10 8 21 21 C 1.38082 * 119.92462 * 179.97438 * 20 19 10 22 22 C 1.38306 * 120.07598 * 359.97438 * 21 20 19 23 23 C 1.38305 * 120.15682 * 0.02562 * 22 21 20 24 24 C 1.38081 * 120.07869 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.46991 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46911 * 299.99718 * 1 2 3 27 27 H 1.08999 * 109.47151 * 59.99956 * 1 2 3 28 28 H 1.08995 * 109.46911 * 240.00282 * 2 1 3 29 29 H 1.08999 * 109.47151 * 120.00044 * 2 1 3 30 30 H 1.09003 * 109.46700 * 62.48277 * 3 2 1 31 31 H 1.09006 * 109.47217 * 302.48817 * 3 2 1 32 32 H 1.08997 * 109.47226 * 182.90267 * 4 3 2 33 33 H 1.08998 * 109.47584 * 42.62598 * 5 4 3 34 34 H 1.09001 * 109.47299 * 162.62741 * 5 4 3 35 35 H 1.09001 * 109.46875 * 305.05837 * 6 5 4 36 36 H 1.08994 * 109.47177 * 65.06033 * 6 5 4 37 37 H 1.09003 * 109.47161 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.47442 * 299.99653 * 7 6 5 39 39 H 1.09001 * 109.47568 * 60.00156 * 7 6 5 40 40 H 0.96992 * 120.00255 * 184.94169 * 14 13 11 41 41 H 1.08009 * 120.03884 * 359.70044 * 20 19 10 42 42 H 1.07999 * 119.95654 * 179.97438 * 21 20 19 43 43 H 1.08003 * 119.92073 * 179.97438 * 22 21 20 44 44 H 1.08006 * 119.95948 * 180.02562 * 23 22 21 45 45 H 1.08009 * 120.03977 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5687 1.4430 -0.0625 5 6 4.1276 0.6422 1.1153 6 6 4.0519 1.4874 2.3884 7 6 4.7247 0.7370 3.5395 8 6 4.0187 0.8143 -1.3561 9 8 3.3899 -0.1060 -1.8340 10 7 5.1201 1.2747 -1.9818 11 6 5.3079 1.0194 -3.3161 12 1 6.3031 0.8449 -3.6976 13 6 4.2183 0.9853 -4.1767 14 7 3.1189 1.6373 -3.8711 15 14 4.3154 0.0127 -5.7685 16 1 5.6518 -0.6257 -5.8777 17 1 3.2637 -1.0356 -5.7732 18 1 4.1085 0.9267 -6.9205 19 6 6.0709 2.0125 -1.2707 20 6 6.7673 1.4240 -0.2221 21 6 7.7062 2.1556 0.4778 22 6 7.9543 3.4725 0.1358 23 6 7.2631 4.0615 -0.9074 24 6 6.3228 3.3359 -1.6116 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7135 1.9433 0.9115 31 1 1.6407 1.9691 -0.8669 32 1 3.9341 2.4686 -0.0106 33 1 3.5410 -0.2670 1.2475 34 1 5.1662 0.3786 0.9153 35 1 4.5630 2.4363 2.2254 36 1 3.0078 1.6753 2.6382 37 1 4.6712 1.3393 4.4464 38 1 4.2137 -0.2119 3.7025 39 1 5.7689 0.5491 3.2897 40 1 2.3341 1.5559 -4.4352 41 1 6.5712 0.3968 0.0482 42 1 8.2474 1.6988 1.2932 43 1 8.6890 4.0426 0.6852 44 1 7.4597 5.0901 -1.1720 45 1 5.7831 3.7966 -2.4258 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000460063255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:16 Heat of formation + Delta-G solvation = -30.704259 kcal Electronic energy + Delta-G solvation = -24618.202279 eV Core-core repulsion = 21406.859455 eV Total energy + Delta-G solvation = -3211.342824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.40579 -39.39438 -37.54335 -35.95259 -34.51371 -33.98100 -31.73417 -31.44411 -30.16110 -27.26455 -27.05593 -24.75338 -23.43390 -23.02627 -22.81515 -21.58852 -20.23132 -19.08659 -18.09104 -17.07757 -16.95024 -16.70575 -15.97659 -15.81442 -15.65737 -15.21836 -14.84736 -14.46489 -14.45142 -14.25304 -13.94176 -13.88771 -13.60953 -13.32051 -13.11157 -12.94309 -12.80389 -12.76894 -12.60316 -12.38605 -12.30860 -12.10406 -12.00654 -11.84931 -11.56262 -11.50796 -11.32068 -11.06477 -10.92739 -9.96168 -9.82398 -9.69320 -8.92237 -8.37828 -6.00358 0.56283 0.63149 1.30900 1.39127 1.47646 2.15787 2.37850 2.94976 3.11814 3.23596 3.83540 3.91267 4.07239 4.19414 4.25702 4.26732 4.32594 4.38733 4.42132 4.47480 4.62684 4.72293 4.76030 4.80162 4.83549 4.85921 4.89943 4.98320 5.06291 5.11253 5.16786 5.22025 5.26419 5.28698 5.37449 5.39747 5.47291 5.51480 5.59600 5.64947 5.74249 5.78910 5.87300 6.06998 6.26633 6.90746 7.17141 7.62735 8.22284 8.72004 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.008700 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.312640 B = 3217.535739 C = 5163.369383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.145 4.145 3 C -0.085 4.085 4 C -0.088 4.088 5 C -0.111 4.111 6 C -0.113 4.113 7 C -0.145 4.145 8 C 0.506 3.494 9 O -0.569 6.569 10 N -0.446 5.446 11 C -0.357 4.357 12 H 0.072 0.928 13 C 0.028 3.972 14 N -0.869 5.869 15 Si 0.966 3.034 16 H -0.262 1.262 17 H -0.289 1.289 18 H -0.273 1.273 19 C 0.136 3.864 20 C -0.150 4.150 21 C -0.097 4.097 22 C -0.135 4.135 23 C -0.106 4.106 24 C -0.149 4.149 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.033 0.967 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.027 0.973 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.263 0.737 41 H 0.114 0.886 42 H 0.153 0.847 43 H 0.156 0.844 44 H 0.142 0.858 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.724 3.105 13.984 15.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C -0.122 4.122 4 C -0.110 4.110 5 C -0.149 4.149 6 C -0.150 4.150 7 C -0.203 4.203 8 C 0.298 3.702 9 O -0.449 6.449 10 N -0.163 5.163 11 C -0.483 4.483 12 H 0.090 0.910 13 C -0.178 4.178 14 N -0.504 5.504 15 Si 0.790 3.210 16 H -0.186 1.186 17 H -0.216 1.216 18 H -0.198 1.198 19 C 0.043 3.957 20 C -0.170 4.170 21 C -0.116 4.116 22 C -0.153 4.153 23 C -0.124 4.124 24 C -0.169 4.169 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.132 0.868 42 H 0.171 0.829 43 H 0.174 0.826 44 H 0.160 0.840 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.207 2.708 13.601 14.492 hybrid contribution -0.481 -0.362 -1.716 1.818 sum 3.726 2.346 11.885 12.675 Atomic orbital electron populations 1.21684 0.95524 1.01392 1.01098 1.21978 0.95998 0.96839 1.03352 1.21251 0.92645 0.97829 1.00521 1.21159 0.97478 0.99282 0.93068 1.21839 1.01089 0.98698 0.93232 1.21464 1.01358 0.98497 0.93694 1.21724 1.00601 1.00311 0.97635 1.20720 0.81288 0.82599 0.85584 1.90274 1.55866 1.30356 1.68425 1.41308 1.19845 1.47264 1.07875 1.19220 0.94714 1.51448 0.82879 0.90969 1.25843 0.95659 0.95182 1.01163 1.69982 1.03725 1.35569 1.41141 0.85331 0.78408 0.78657 0.78573 1.18564 1.21555 1.19819 1.18437 0.93030 0.90910 0.93278 1.21325 0.97952 0.99918 0.97828 1.21249 0.96385 0.94558 0.99367 1.21401 1.00829 0.95355 0.97727 1.21260 0.95091 1.00337 0.95749 1.21320 1.00739 0.93526 1.01308 0.92497 0.91486 0.94762 0.91021 0.91530 0.89926 0.95362 0.91624 0.91540 0.91696 0.92255 0.91587 0.91374 0.92764 0.92539 0.92743 0.86837 0.82949 0.82626 0.84040 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 9.91 71.98 0.71 -3.75 16 2 C -0.14 -5.50 5.23 30.60 0.16 -5.34 16 3 C -0.08 -3.28 4.80 30.59 0.15 -3.13 16 4 C -0.09 -3.58 1.79 -11.54 -0.02 -3.60 16 5 C -0.11 -3.61 4.32 30.60 0.13 -3.47 16 6 C -0.11 -2.78 5.75 30.60 0.18 -2.61 16 7 C -0.15 -2.85 9.91 71.98 0.71 -2.13 16 8 C 0.51 26.12 5.08 87.66 0.45 26.57 16 9 O -0.57 -33.27 11.93 -3.02 -0.04 -33.30 16 10 N -0.45 -23.38 2.65 -458.90 -1.21 -24.59 16 11 C -0.36 -20.57 9.01 84.02 0.76 -19.81 16 12 H 0.07 4.14 7.94 -2.91 -0.02 4.11 16 13 C 0.03 1.60 4.27 84.91 0.36 1.96 16 14 N -0.87 -52.30 12.04 21.65 0.26 -52.04 16 15 Si 0.97 46.61 29.62 68.60 2.03 48.64 16 16 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 C 0.14 5.90 4.01 38.22 0.15 6.05 16 20 C -0.15 -5.30 7.83 22.41 0.18 -5.12 16 21 C -0.10 -2.55 10.04 22.25 0.22 -2.33 16 22 C -0.13 -3.29 10.04 22.30 0.22 -3.06 16 23 C -0.11 -3.13 10.04 22.25 0.22 -2.91 16 24 C -0.15 -5.98 9.73 22.41 0.22 -5.76 16 25 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 3.45 4.92 -2.43 -0.01 3.44 16 29 H 0.07 2.25 6.16 -2.39 -0.01 2.23 16 30 H 0.08 2.61 7.32 -2.39 -0.02 2.59 16 31 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.07 2.74 7.13 -2.39 -0.02 2.72 16 33 H 0.07 2.19 5.63 -2.39 -0.01 2.18 16 34 H 0.06 2.17 4.33 -2.39 -0.01 2.16 16 35 H 0.06 1.49 8.05 -2.39 -0.02 1.47 16 36 H 0.07 1.54 7.35 -2.39 -0.02 1.52 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.26 15.30 8.32 -92.71 -0.77 14.53 16 41 H 0.11 4.05 6.28 -2.91 -0.02 4.03 16 42 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 43 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 44 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 45 H 0.09 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -70.54 351.94 6.80 -63.73 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.96 Total: 26.01 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 4.80 Total: -28.45 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -0.95 Total: -76.63 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.04 Total: -33.30 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -70.54 6.80 -63.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000460063255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.028 kcal (2) G-P(sol) polarization free energy of solvation -70.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds