Wall clock time and date at job start Tue Mar 31 2020 06:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46996 * 2 1 4 4 C 1.52995 * 109.47258 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47439 * 185.34579 * 4 3 2 6 6 H 1.09005 * 109.46788 * 54.02750 * 5 4 3 7 7 C 1.52990 * 109.47703 * 294.02208 * 5 4 3 8 8 C 1.52996 * 109.47792 * 170.77722 * 7 5 4 9 9 C 1.50705 * 109.47451 * 174.01646 * 5 4 3 10 10 O 1.21284 * 119.99783 * 10.72501 * 9 5 4 11 11 N 1.34772 * 120.00333 * 190.72090 * 9 5 4 12 12 C 1.37138 * 120.00477 * 243.61157 * 11 9 5 13 13 H 1.07992 * 120.00177 * 189.24560 * 12 11 9 14 14 C 1.38896 * 119.99736 * 9.24368 * 12 11 9 15 15 N 1.31425 * 119.99715 * 8.45889 * 14 12 11 16 16 Si 1.86793 * 119.99880 * 188.45488 * 14 12 11 17 17 H 1.48498 * 109.47237 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47294 * 120.00194 * 16 14 12 19 19 H 1.48501 * 109.46949 * 240.00022 * 16 14 12 20 20 C 1.39797 * 119.99536 * 63.61019 * 11 9 5 21 21 C 1.38953 * 120.07957 * 5.92658 * 20 11 9 22 22 C 1.38086 * 119.91977 * 179.74217 * 21 20 11 23 23 C 1.38305 * 120.07737 * 0.52810 * 22 21 20 24 24 C 1.38303 * 120.15649 * 359.72488 * 23 22 21 25 25 C 1.38090 * 120.07941 * 0.02562 * 24 23 22 26 26 H 1.08999 * 109.47248 * 59.99733 * 1 2 3 27 27 H 1.09005 * 109.47001 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47263 * 299.99936 * 1 2 3 29 29 H 1.08995 * 109.47222 * 240.00235 * 2 1 3 30 30 H 1.08999 * 109.47026 * 119.99762 * 2 1 3 31 31 H 1.09004 * 109.47062 * 59.99941 * 3 2 1 32 32 H 1.08999 * 109.47340 * 300.00210 * 3 2 1 33 33 H 1.09006 * 109.47221 * 65.35159 * 4 3 2 34 34 H 1.09003 * 109.47519 * 305.35224 * 4 3 2 35 35 H 1.09002 * 109.46993 * 50.77695 * 7 5 4 36 36 H 1.09003 * 109.47241 * 290.78279 * 7 5 4 37 37 H 1.08998 * 109.47891 * 178.53667 * 8 7 5 38 38 H 1.09008 * 109.46796 * 58.53642 * 8 7 5 39 39 H 1.09004 * 109.47384 * 298.54479 * 8 7 5 40 40 H 0.97004 * 119.99333 * 185.00125 * 15 14 12 41 41 H 1.08005 * 120.03888 * 359.97438 * 21 20 11 42 42 H 1.07997 * 119.95927 * 180.25336 * 22 21 20 43 43 H 1.08004 * 119.91937 * 179.69894 * 23 22 21 44 44 H 1.08004 * 119.96076 * 179.97438 * 24 23 22 45 45 H 1.07995 * 120.03736 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8788 0.1350 6 1 3.6314 3.3428 1.0136 7 6 3.6968 3.6751 -1.1139 8 6 3.9994 5.1575 -0.8865 9 6 5.5796 2.8676 0.2834 10 8 6.2006 1.8442 0.0886 11 7 6.2306 3.9949 0.6323 12 6 7.1247 4.5672 -0.2359 13 1 7.7548 5.3792 0.0953 14 6 7.2198 4.1022 -1.5413 15 7 6.3450 3.2323 -1.9943 16 14 8.5910 4.7134 -2.6528 17 1 9.4366 5.6815 -1.9092 18 1 9.4225 3.5638 -3.0912 19 1 8.0036 5.3814 -3.8419 20 6 5.9945 4.5808 1.8794 21 6 5.1845 3.9390 2.8083 22 6 4.9578 4.5182 4.0411 23 6 5.5270 5.7408 4.3478 24 6 6.3295 6.3849 3.4237 25 6 6.5647 5.8092 2.1908 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9337 1.0138 -0.9332 34 1 3.9330 0.8481 0.8391 35 1 2.6329 3.5479 -1.3137 36 1 4.2722 3.3133 -1.9661 37 1 3.7508 5.7212 -1.7856 38 1 5.0587 5.2816 -0.6610 39 1 3.4045 5.5257 -0.0506 40 1 6.4529 2.8528 -2.8805 41 1 4.7359 2.9864 2.5677 42 1 4.3317 4.0179 4.7651 43 1 5.3440 6.1938 5.3110 44 1 6.7720 7.3398 3.6663 45 1 7.1911 6.3129 1.4696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497910172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:33 Heat of formation + Delta-G solvation = -11.546294 kcal Electronic energy + Delta-G solvation = -24465.209690 eV Core-core repulsion = 21254.697618 eV Total energy + Delta-G solvation = -3210.512072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.93269 -37.70530 -35.98140 -34.64383 -33.38786 -32.23129 -30.14321 -29.79519 -28.41689 -26.66910 -25.05468 -22.78172 -22.08770 -21.39251 -21.17762 -20.19651 -18.82904 -17.46900 -16.56184 -15.55984 -15.17661 -15.04978 -14.77593 -14.17929 -13.79105 -13.51815 -13.38836 -13.21507 -13.08324 -12.68801 -12.57560 -12.31280 -12.14748 -11.86132 -11.72189 -11.38379 -11.18474 -11.02690 -10.87831 -10.74945 -10.73412 -10.65591 -10.46579 -10.34958 -10.17181 -10.10032 -9.83592 -9.70192 -9.47795 -8.76683 -8.41939 -8.15247 -6.87351 -6.49841 -3.93813 2.23239 2.32742 3.11314 3.18492 3.21428 3.63357 4.01302 4.55102 4.63328 5.07289 5.10877 5.14591 5.30876 5.52559 5.64682 5.67311 5.70384 5.75933 5.89696 5.93878 5.95484 6.08244 6.12399 6.20003 6.21607 6.26352 6.29834 6.41220 6.41889 6.48899 6.57264 6.64314 6.73802 6.82834 6.84650 6.92504 6.96866 7.18372 7.29005 7.31529 7.40186 7.52182 7.57236 7.70882 7.91275 8.64811 8.95859 9.22993 9.57308 10.54923 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011252 B = 0.007502 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.840971 B = 3731.454700 C = 5535.996187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.098 4.098 5 C -0.105 4.105 6 H 0.077 0.923 7 C -0.102 4.102 8 C -0.161 4.161 9 C 0.591 3.409 10 O -0.486 6.486 11 N -0.457 5.457 12 C -0.314 4.314 13 H 0.104 0.896 14 C 0.030 3.970 15 N -0.860 5.860 16 Si 0.933 3.067 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.214 3.786 21 C -0.223 4.223 22 C -0.071 4.071 23 C -0.218 4.218 24 C -0.074 4.074 25 C -0.195 4.195 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.103 0.897 37 H 0.032 0.968 38 H 0.100 0.900 39 H 0.029 0.971 40 H 0.276 0.724 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 0.445 3.692 8.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.136 4.136 5 C -0.127 4.127 6 H 0.095 0.905 7 C -0.140 4.140 8 C -0.218 4.218 9 C 0.383 3.617 10 O -0.356 6.356 11 N -0.161 5.161 12 C -0.440 4.440 13 H 0.122 0.878 14 C -0.175 4.175 15 N -0.497 5.497 16 Si 0.760 3.240 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.206 1.206 20 C 0.105 3.895 21 C -0.246 4.246 22 C -0.090 4.090 23 C -0.240 4.240 24 C -0.093 4.093 25 C -0.218 4.218 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.121 0.879 37 H 0.051 0.949 38 H 0.119 0.881 39 H 0.048 0.952 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.114 -0.362 3.079 7.760 hybrid contribution 0.579 0.301 -0.647 0.919 sum -6.535 -0.061 2.432 6.973 Atomic orbital electron populations 1.21778 0.96388 1.01044 1.01619 1.21534 0.95233 0.97558 1.01894 1.21674 0.96101 0.95997 1.01822 1.21368 0.93785 0.95724 1.02723 1.21496 0.93991 0.96911 1.00262 0.90534 1.21580 0.98805 0.95192 0.98395 1.22007 1.05591 0.95526 0.98662 1.19725 0.88628 0.81562 0.71833 1.90441 1.70127 1.33018 1.42051 1.41280 1.39020 1.22843 1.12985 1.19634 1.16060 1.18133 0.90162 0.87800 1.25166 0.98055 0.97272 0.97001 1.69258 1.31926 1.28840 1.19696 0.85739 0.80283 0.78466 0.79505 1.19340 1.20608 1.20644 1.17843 0.93930 0.91829 0.85905 1.20542 1.06607 1.02080 0.95386 1.20603 0.98104 0.95121 0.95181 1.20537 1.05542 0.97888 0.99985 1.20739 0.96977 0.98335 0.93284 1.20610 1.06970 0.96027 0.98200 0.92910 0.93217 0.92933 0.92147 0.92269 0.92440 0.91861 0.91174 0.92588 0.94286 0.87856 0.94881 0.88100 0.95210 0.91160 0.87424 0.87556 0.87929 0.87504 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 2 C -0.12 -1.58 5.93 -26.73 -0.16 -1.74 16 3 C -0.12 -1.73 4.87 -26.73 -0.13 -1.86 16 4 C -0.10 -1.79 3.98 -26.73 -0.11 -1.90 16 5 C -0.10 -2.14 1.69 -91.78 -0.16 -2.29 16 6 H 0.08 1.51 6.13 -51.93 -0.32 1.19 16 7 C -0.10 -2.07 4.91 -26.74 -0.13 -2.20 16 8 C -0.16 -3.32 9.64 37.16 0.36 -2.96 16 9 C 0.59 14.39 2.52 -10.98 -0.03 14.37 16 10 O -0.49 -13.44 15.51 5.55 0.09 -13.36 16 11 N -0.46 -11.10 1.56 -58.98 -0.09 -11.19 16 12 C -0.31 -7.87 7.49 -14.93 -0.11 -7.98 16 13 H 0.10 2.50 5.91 -52.49 -0.31 2.19 16 14 C 0.03 0.74 4.90 -17.48 -0.09 0.65 16 15 N -0.86 -21.90 7.31 55.49 0.41 -21.50 16 16 Si 0.93 19.95 29.56 -169.99 -5.03 14.93 16 17 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 C 0.21 4.72 6.33 -83.69 -0.53 4.19 16 21 C -0.22 -4.49 8.28 -39.37 -0.33 -4.82 16 22 C -0.07 -1.24 10.04 -39.61 -0.40 -1.64 16 23 C -0.22 -3.67 10.04 -39.53 -0.40 -4.06 16 24 C -0.07 -1.30 10.04 -39.61 -0.40 -1.70 16 25 C -0.20 -3.95 9.27 -39.37 -0.37 -4.31 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.92 6.66 -51.93 -0.35 0.57 16 33 H 0.07 1.40 8.13 -51.93 -0.42 0.98 16 34 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.04 0.69 6.34 -51.93 -0.33 0.37 16 36 H 0.10 2.35 5.68 -51.93 -0.29 2.05 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 2.34 3.97 -51.92 -0.21 2.14 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.28 6.85 8.32 -40.82 -0.34 6.52 16 41 H 0.11 2.16 5.98 -52.48 -0.31 1.84 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.10 1.45 8.06 -52.48 -0.42 1.03 16 44 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 45 H 0.12 2.45 6.11 -52.49 -0.32 2.13 16 LS Contribution 345.73 15.07 5.21 5.21 Total: -1.00 -27.22 345.73 -9.08 -36.30 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.07 Total: 9.12 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -2.59 Total: -19.51 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.31 Total: -32.69 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.22 -9.08 -36.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497910172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.754 kcal (2) G-P(sol) polarization free energy of solvation -27.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds