Wall clock time and date at job start Tue Mar 31 2020 06:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46996 * 2 1 4 4 C 1.52995 * 109.47258 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47439 * 185.34579 * 4 3 2 6 6 H 1.09005 * 109.46788 * 54.02750 * 5 4 3 7 7 C 1.52990 * 109.47703 * 294.02208 * 5 4 3 8 8 C 1.52996 * 109.47792 * 170.77722 * 7 5 4 9 9 C 1.50705 * 109.47451 * 174.01646 * 5 4 3 10 10 O 1.21284 * 119.99783 * 10.72501 * 9 5 4 11 11 N 1.34772 * 120.00333 * 190.72090 * 9 5 4 12 12 C 1.37138 * 120.00477 * 243.61157 * 11 9 5 13 13 H 1.07992 * 120.00177 * 189.24560 * 12 11 9 14 14 C 1.38896 * 119.99736 * 9.24368 * 12 11 9 15 15 N 1.31425 * 119.99715 * 8.45889 * 14 12 11 16 16 Si 1.86793 * 119.99880 * 188.45488 * 14 12 11 17 17 H 1.48498 * 109.47237 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47294 * 120.00194 * 16 14 12 19 19 H 1.48501 * 109.46949 * 240.00022 * 16 14 12 20 20 C 1.39797 * 119.99536 * 63.61019 * 11 9 5 21 21 C 1.38953 * 120.07957 * 5.92658 * 20 11 9 22 22 C 1.38086 * 119.91977 * 179.74217 * 21 20 11 23 23 C 1.38305 * 120.07737 * 0.52810 * 22 21 20 24 24 C 1.38303 * 120.15649 * 359.72488 * 23 22 21 25 25 C 1.38090 * 120.07941 * 0.02562 * 24 23 22 26 26 H 1.08999 * 109.47248 * 59.99733 * 1 2 3 27 27 H 1.09005 * 109.47001 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47263 * 299.99936 * 1 2 3 29 29 H 1.08995 * 109.47222 * 240.00235 * 2 1 3 30 30 H 1.08999 * 109.47026 * 119.99762 * 2 1 3 31 31 H 1.09004 * 109.47062 * 59.99941 * 3 2 1 32 32 H 1.08999 * 109.47340 * 300.00210 * 3 2 1 33 33 H 1.09006 * 109.47221 * 65.35159 * 4 3 2 34 34 H 1.09003 * 109.47519 * 305.35224 * 4 3 2 35 35 H 1.09002 * 109.46993 * 50.77695 * 7 5 4 36 36 H 1.09003 * 109.47241 * 290.78279 * 7 5 4 37 37 H 1.08998 * 109.47891 * 178.53667 * 8 7 5 38 38 H 1.09008 * 109.46796 * 58.53642 * 8 7 5 39 39 H 1.09004 * 109.47384 * 298.54479 * 8 7 5 40 40 H 0.97004 * 119.99333 * 185.00125 * 15 14 12 41 41 H 1.08005 * 120.03888 * 359.97438 * 21 20 11 42 42 H 1.07997 * 119.95927 * 180.25336 * 22 21 20 43 43 H 1.08004 * 119.91937 * 179.69894 * 23 22 21 44 44 H 1.08004 * 119.96076 * 179.97438 * 24 23 22 45 45 H 1.07995 * 120.03736 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8788 0.1350 6 1 3.6314 3.3428 1.0136 7 6 3.6968 3.6751 -1.1139 8 6 3.9994 5.1575 -0.8865 9 6 5.5796 2.8676 0.2834 10 8 6.2006 1.8442 0.0886 11 7 6.2306 3.9949 0.6323 12 6 7.1247 4.5672 -0.2359 13 1 7.7548 5.3792 0.0953 14 6 7.2198 4.1022 -1.5413 15 7 6.3450 3.2323 -1.9943 16 14 8.5910 4.7134 -2.6528 17 1 9.4366 5.6815 -1.9092 18 1 9.4225 3.5638 -3.0912 19 1 8.0036 5.3814 -3.8419 20 6 5.9945 4.5808 1.8794 21 6 5.1845 3.9390 2.8083 22 6 4.9578 4.5182 4.0411 23 6 5.5270 5.7408 4.3478 24 6 6.3295 6.3849 3.4237 25 6 6.5647 5.8092 2.1908 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9337 1.0138 -0.9332 34 1 3.9330 0.8481 0.8391 35 1 2.6329 3.5479 -1.3137 36 1 4.2722 3.3133 -1.9661 37 1 3.7508 5.7212 -1.7856 38 1 5.0587 5.2816 -0.6610 39 1 3.4045 5.5257 -0.0506 40 1 6.4529 2.8528 -2.8805 41 1 4.7359 2.9864 2.5677 42 1 4.3317 4.0179 4.7651 43 1 5.3440 6.1938 5.3110 44 1 6.7720 7.3398 3.6663 45 1 7.1911 6.3129 1.4696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497910172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:33 Heat of formation + Delta-G solvation = -22.543680 kcal Electronic energy + Delta-G solvation = -24465.686572 eV Core-core repulsion = 21254.697618 eV Total energy + Delta-G solvation = -3210.988955 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.63546 -39.28402 -37.37431 -36.42791 -34.73899 -34.00286 -31.65225 -31.17888 -30.01089 -28.18423 -26.67489 -24.29441 -23.60305 -22.90137 -22.49786 -21.59314 -20.50434 -19.16679 -18.27100 -17.17199 -16.68747 -16.56007 -16.34265 -15.84441 -15.27481 -14.99794 -14.69620 -14.60006 -14.47992 -14.19858 -14.06248 -13.87025 -13.56267 -13.46062 -13.33135 -12.94852 -12.79606 -12.61631 -12.38043 -12.19023 -12.05438 -12.01132 -11.95884 -11.84804 -11.65460 -11.45816 -11.35849 -11.33285 -11.09784 -10.57642 -10.17430 -9.63519 -8.54519 -8.32780 -5.81289 0.73323 0.81170 1.37362 1.42627 1.51774 1.85418 2.27361 2.90297 2.98624 3.35714 3.88558 3.91283 4.09818 4.20460 4.25916 4.30607 4.39421 4.42334 4.52559 4.60327 4.61458 4.75410 4.82548 4.84694 4.90689 4.94027 4.94752 4.99773 5.10973 5.14702 5.21383 5.23611 5.29756 5.34728 5.40494 5.42372 5.48060 5.54505 5.74304 5.75938 5.83774 5.89744 5.92169 5.98543 6.39145 6.82723 7.15726 7.48752 7.77801 8.70376 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011252 B = 0.007502 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.840971 B = 3731.454700 C = 5535.996187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.090 4.090 5 C -0.096 4.096 6 H 0.085 0.915 7 C -0.096 4.096 8 C -0.155 4.155 9 C 0.591 3.409 10 O -0.540 6.540 11 N -0.479 5.479 12 C -0.326 4.326 13 H 0.104 0.896 14 C -0.016 4.016 15 N -0.879 5.879 16 Si 0.989 3.011 17 H -0.260 1.260 18 H -0.292 1.292 19 H -0.275 1.275 20 C 0.186 3.814 21 C -0.235 4.235 22 C -0.069 4.069 23 C -0.200 4.200 24 C -0.072 4.072 25 C -0.209 4.209 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.270 0.730 41 H 0.100 0.900 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.099 1.919 5.919 11.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.146 4.146 4 C -0.128 4.128 5 C -0.118 4.118 6 H 0.103 0.897 7 C -0.134 4.134 8 C -0.213 4.213 9 C 0.385 3.615 10 O -0.414 6.414 11 N -0.186 5.186 12 C -0.452 4.452 13 H 0.121 0.879 14 C -0.217 4.217 15 N -0.518 5.518 16 Si 0.814 3.186 17 H -0.184 1.184 18 H -0.218 1.218 19 H -0.201 1.201 20 C 0.081 3.919 21 C -0.258 4.258 22 C -0.088 4.088 23 C -0.220 4.220 24 C -0.091 4.091 25 C -0.232 4.232 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.118 0.882 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.802 1.167 5.367 10.375 hybrid contribution 1.094 -0.043 -1.073 1.533 sum -7.708 1.124 4.294 8.895 Atomic orbital electron populations 1.21741 0.94389 1.02117 1.02153 1.21520 0.96927 0.96023 1.01698 1.21609 0.92924 0.97663 1.02449 1.21292 0.96509 0.94097 1.00893 1.21472 0.91563 0.98222 1.00561 0.89674 1.21489 0.99871 0.94812 0.97193 1.21913 1.04134 0.95889 0.99316 1.20342 0.90015 0.80881 0.70288 1.90392 1.71434 1.34724 1.44807 1.41295 1.40236 1.23205 1.13896 1.19792 1.16696 1.18202 0.90524 0.87877 1.25887 0.99900 0.97855 0.98089 1.69368 1.32902 1.30085 1.19478 0.84897 0.77996 0.77605 0.78095 1.18394 1.21836 1.20078 1.18262 0.95189 0.92928 0.85528 1.20710 1.06616 1.02075 0.96389 1.21036 0.97867 0.95420 0.94471 1.21071 1.02988 0.96931 1.01040 1.21149 0.96486 0.99456 0.92001 1.20772 1.07137 0.95769 0.99551 0.92562 0.91947 0.92196 0.92745 0.92227 0.91283 0.91552 0.93751 0.93558 0.91570 0.90499 0.94168 0.90601 0.94144 0.91917 0.88155 0.84111 0.83925 0.84165 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.91 71.98 0.71 -2.09 16 2 C -0.12 -3.01 5.93 30.59 0.18 -2.83 16 3 C -0.11 -3.08 4.87 30.59 0.15 -2.93 16 4 C -0.09 -3.37 3.98 30.59 0.12 -3.25 16 5 C -0.10 -4.03 1.69 -11.54 -0.02 -4.04 16 6 H 0.09 3.36 6.13 -2.38 -0.01 3.35 16 7 C -0.10 -3.94 4.91 30.59 0.15 -3.79 16 8 C -0.16 -6.43 9.64 71.98 0.69 -5.74 16 9 C 0.59 30.03 2.52 87.66 0.22 30.25 16 10 O -0.54 -31.64 15.51 -3.04 -0.05 -31.69 16 11 N -0.48 -24.07 1.56 -458.90 -0.71 -24.79 16 12 C -0.33 -17.00 7.49 84.02 0.63 -16.37 16 13 H 0.10 5.16 5.91 -2.91 -0.02 5.14 16 14 C -0.02 -0.84 4.90 84.91 0.42 -0.42 16 15 N -0.88 -47.18 7.31 21.65 0.16 -47.03 16 16 Si 0.99 42.45 29.56 68.60 2.03 44.48 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 18 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 20 C 0.19 8.25 6.33 38.21 0.24 8.49 16 21 C -0.23 -9.23 8.28 22.41 0.19 -9.04 16 22 C -0.07 -2.18 10.04 22.25 0.22 -1.95 16 23 C -0.20 -5.75 10.04 22.30 0.22 -5.53 16 24 C -0.07 -2.28 10.04 22.25 0.22 -2.06 16 25 C -0.21 -8.32 9.27 22.41 0.21 -8.11 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.07 1.83 6.66 -2.39 -0.02 1.82 16 33 H 0.04 1.87 8.13 -2.38 -0.02 1.85 16 34 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 35 H 0.07 2.31 6.34 -2.39 -0.02 2.29 16 36 H 0.08 3.63 5.68 -2.39 -0.01 3.62 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 3.61 3.97 -2.38 -0.01 3.60 16 39 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.27 14.18 8.32 -92.71 -0.77 13.41 16 41 H 0.10 4.03 5.98 -2.91 -0.02 4.01 16 42 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 43 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 44 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 45 H 0.11 4.60 6.11 -2.91 -0.02 4.58 16 Total: -1.00 -62.19 345.73 6.95 -55.24 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: 0.96 Total: 33.19 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 4.56 Total: -29.42 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -0.56 Total: -71.81 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.05 Total: -31.69 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -62.19 6.95 -55.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497910172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.699 kcal (2) G-P(sol) polarization free energy of solvation -62.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds